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Functions451 in github.com/OpenGene/fastp

⨍ Functions 451◇ Types & classes 77

src/read.cpp:182

src/readpool.cpp:7

FunctionReverseComplementImpl

src/simd.cpp:121

src/sequence.cpp:4

MethodSingleEndProcessor

src/seprocessor.cpp:15

MethodSingleProducerSingleConsumerList

src/singleproducersingleconsumerlist.h:65

MethodSplitOptions

src/options.h:174

src/stats.cpp:8

MethodTFromD<D> ReduceSumFallback

src/simd.cpp:45

MethodThreadConfig

src/threadconfig.cpp:4

MethodTrimmingOptions

src/options.h:225

MethodUMIOptions

src/options.h:106

MethodUmiProcessor

src/umiprocessor.cpp:3

src/unittest.cpp:15

src/writer.cpp:29

MethodWriterThread

src/writerthread.cpp:11

src/cmdline.h:178

MethodaddFilterResult

src/filterresult.cpp:28

MethodaddMergedPairs

src/filterresult.cpp:34

MethodaddUmiToName

src/umiprocessor.cpp:63

src/overlapanalysis.cpp:12

MethodapplyBloomFilter

src/duplicate.cpp:150

src/stats.cpp:313

MethodbufferFinished

src/fastqreader.cpp:78

src/cmdline.h:49

src/cmdline.h:62

src/cmdline.h:70

src/cmdline.h:80

src/cmdline.h:589

MethodcheckKnownAdapters

src/evaluator.cpp:220

Functioncheck_file_writable

Functioncheck_filename_valid

MethodclaimSlot

src/readpool.cpp:33

src/writerthread.cpp:170

src/threadconfig.cpp:32

MethodclearLineBreaks

src/fastqreader.cpp:223

src/fastqreader.cpp:370

MethodcloseOutput

src/peprocessor.cpp:93

MethodcloseOutput

src/seprocessor.cpp:56

Methodcmdline_error

src/cmdline.h:138

MethodcomputeOverRepSeq

src/evaluator.cpp:78

MethodcomputeSeqLen

src/evaluator.cpp:54

MethodconvertPhred64To33

src/read.cpp:35

MethodcorrectByOverlapAnalysis

src/basecorrector.cpp:11

MethodcurrentDescription

src/fastareader.h:30

MethodcurrentID

src/fastareader.h:25

MethodcurrentSequence

src/fastareader.h:35

MethoddecompWorker

Functiondefault_value

src/cmdline.h:121

MethoddeleteOverRepSeqDist

src/stats.cpp:974

MethoddeleteWriter

src/writerthread.cpp:197

MethoddeleteWriter

src/threadconfig.cpp:76

src/nucleotidetree.cpp:15

MethoddiffWithOneInsertion

src/matcher.cpp:56

src/fastqreader.cpp:236

src/cmdline.h:545

Methoderror_full

src/cmdline.h:549

MethodextendBuffer

src/stats.cpp:65

src/writer.cpp:57

Functionfind_with_right_pos

src/writer.cpp:50

src/cmdline.h:349

MethodformatNumber

src/htmlreporter.cpp:34

Methodfull_description

src/cmdline.h:760

MethodgetAdapterReportCount

src/filterresult.cpp:402

MethodgetAdapterWithSeed

src/evaluator.cpp:485

MethodgetCorrectionNum

src/filterresult.cpp:109

MethodgetCurrentSystemTime

src/htmlreporter.cpp:612

src/fastqreader.cpp:240

MethodgetPeakInsertSize

src/peprocessor.cpp:338

MethodgetPercents

src/htmlreporter.cpp:49

MethodgetTotalCorrectedBases

src/filterresult.cpp:91

src/fastareader.cpp:91

MethodhasNoLineBreakAtEnd

src/fastqreader.cpp:69

src/cmdline.h:660

Methodhas_value

src/cmdline.h:649

src/writer.cpp:61

src/options.cpp:34

src/fastqreader.cpp:169

MethodinitBufferLists

src/readpool.cpp:45

MethodinitBufferLists

src/writerthread.cpp:209

MethodinitConfig

src/peprocessor.cpp:124

MethodinitConfig

src/seprocessor.cpp:67

MethodinitOutput

src/peprocessor.cpp:67

MethodinitOutput

src/seprocessor.cpp:48

MethodinitOverRepSeq

src/stats.cpp:957

MethodinitPrimeArrays

src/duplicate.cpp:66

MethodinitWriter

src/writerthread.cpp:204

MethodinitWriter

src/threadconfig.cpp:87

src/writerthread.cpp:109

MethodinputPwrite

src/writerthread.cpp:118

MethodinterleavedReaderTask

src/peprocessor.cpp:890

MethodisConsumerFinished

src/singleproducersingleconsumerlist.h:129

src/singleproducersingleconsumerlist.h:92

src/fastqreader.cpp:390

MethodisLongRead

src/stats.cpp:620

MethodisLowComplexity

src/filterresult.cpp:115

MethodisPwriteMode

src/writerthread.h:41

MethodisZipFastq

src/fastqreader.cpp:377

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