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Functions451 in github.com/OpenGene/fastp

⨍ Functions 451◇ Types & classes 77

src/writer.cpp:152

src/fastqreader.cpp:403

src/stats.cpp:700

src/stats.cpp:691

Functionlexical_cast

src/cmdline.h:100

Methodlist2string

src/stats.cpp:465

MethodlowQualCount

src/read.cpp:102

src/main.cpp:16

src/singleproducersingleconsumerlist.h:140

MethodmakeKmerTD

src/stats.cpp:656

MethodmakeListFromFileByLine

src/options.cpp:483

src/filter.cpp:227

MethodmatchKnownAdapter

src/evaluator.cpp:541

MethodmatchWithOneInsertion

src/matcher.cpp:10

src/overlapanalysis.cpp:148

src/stats.cpp:877

src/filterresult.cpp:38

src/cmdline.h:668

src/cmdline.h:184

Methodoperator()

src/cmdline.h:147

Methodoperator()

src/cmdline.h:155

Methodoperator()

src/cmdline.h:172

Methodoperator()

src/filterresult.h:15

Methodoperator~

src/sequence.cpp:38

Methodoption_with_value

src/cmdline.h:698

Methodoption_with_value_with_reader

src/cmdline.h:782

Methodoption_without_value

src/cmdline.h:642

MethodoutputAdaptersHtml

src/filterresult.cpp:423

MethodoutputAdaptersJson

src/filterresult.cpp:255

MethodoutputRow

src/htmlreporter.cpp:26

MethodoverRepPassed

src/stats.cpp:519

src/cmdline.h:374

src/cmdline.h:312

MethodpassLowComplexityFilter

src/filter.cpp:59

src/sequence.cpp:16

src/stats.cpp:363

src/filterresult.cpp:208

src/htmlreporter.cpp:568

MethodprintFile

src/read.cpp:48

MethodprintFooter

src/htmlreporter.cpp:623

MethodprintHeader

src/htmlreporter.cpp:559

src/htmlreporter.cpp:596

MethodprintSummary

src/htmlreporter.cpp:56

src/umiprocessor.cpp:11

MethodprocessPairEnd

src/peprocessor.cpp:362

MethodprocessSingleEnd

src/seprocessor.cpp:197

MethodprocessorTask

src/peprocessor.cpp:1021

MethodprocessorTask

src/seprocessor.cpp:434

src/cmdline.h:165

Methodrange_reader

src/cmdline.h:154

src/cmdline.h:792

src/fastareader.cpp:47

MethodreadToBuf

src/fastqreader.cpp:151

MethodreadToBufIgzip

src/fastqreader.cpp:88

Functionreadable_typename

src/cmdline.h:115

MethodreaderLoop

MethodreaderTask

src/peprocessor.cpp:725

MethodreaderTask

src/seprocessor.cpp:327

src/singleproducersingleconsumerlist.h:155

MethodrecycleToPool

src/seprocessor.cpp:191

MethodrecycleToPool1

src/peprocessor.cpp:350

MethodrecycleToPool2

src/peprocessor.cpp:356

src/jsonreporter.cpp:22

src/htmlreporter.cpp:427

MethodreportDuplication

src/htmlreporter.cpp:283

MethodreportHtml

src/filterresult.cpp:358

MethodreportInsertSize

src/htmlreporter.cpp:228

MethodreportJson

src/filterresult.cpp:235

MethodreportQualHistogram

src/htmlreporter.cpp:344

MethodreverseComplement

src/sequence.cpp:24

Functionrun_command

parallel.py:155

FunctionscalarCountMismatches

src/simd.cpp:318

Methodseq2intvector

src/duplicate.cpp:111

src/cmdline.h:651

MethodsetCyclePointers

src/stats.cpp:54

src/htmlreporter.cpp:17

MethodsetInputCompletedPwrite

src/writerthread.cpp:77

MethodsetInsertHist

src/htmlreporter.cpp:21

Methodset_option

src/cmdline.h:601

Methodset_program_name

src/cmdline.h:353

Methodshort_description

src/cmdline.h:684

Methodshort_name

src/cmdline.h:676

src/singleproducersingleconsumerlist.h:89

MethodstatInsertSize

src/peprocessor.cpp:710

Functionstr2upper

Functionstr_keep_alpha

Remove non alphabetic characters from a string

src/cmdline.h:127

src/read.cpp:173

src/overlapanalysis.cpp:181

src/evaluator.cpp:628

src/filter.cpp:245

src/sequence.cpp:42

src/adaptertrimmer.cpp:159

src/fastareader.cpp:102

src/basecorrector.cpp:85

src/umiprocessor.cpp:86

src/fastqreader.cpp:407

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