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Functions451 in github.com/OpenGene/fastp

⨍ Functions 451◇ Types & classes 77

↓ 131 callersMethodlength

src/read.cpp:111

↓ 92 callersFunctionerror_exit

↓ 87 callersMethodadd

src/cmdline.h:320

↓ 59 callersMethodexist

src/cmdline.h:357

↓ 47 callersMethodsize

src/readpool.cpp:56

↓ 22 callersMethodresize

src/read.cpp:62

↓ 19 callersMethodisPaired

src/options.cpp:37

↓ 19 callersFunctionloginfo

↓ 17 callersMethodgetFilterResult

src/threadconfig.h:26

↓ 16 callersMethodprint

src/read.cpp:41

↓ 15 callersMethodinput

src/readpool.cpp:22

↓ 13 callersFunctionends_with

↓ 12 callersMethodappendToString

src/read.cpp:119

↓ 12 callersMethodproduce

src/singleproducersingleconsumerlist.h:103

↓ 11 callersMethodgetCycles

src/stats.cpp:317

↓ 11 callersMethodgetReads

src/stats.cpp:323

↓ 11 callersMethodread

src/fastqreader.cpp:309

↓ 11 callersFunctionreverseComplement

src/simd.cpp:263

↓ 10 callersFunctionfile_exists

Check if a string is a file or directory

↓ 10 callersMethodgetMeanLength

src/stats.cpp:184

↓ 10 callersFunctionreplace

↓ 9 callersMethodcanBeConsumed

src/singleproducersingleconsumerlist.h:95

↓ 9 callersMethodgetThreadId

src/threadconfig.h:34

↓ 9 callersMethodsetInputCompleted

src/writerthread.cpp:64

↓ 9 callersMethodstatRead

src/stats.cpp:191

↓ 8 callersMethodappendToStringWithTag

src/read.cpp:136

↓ 8 callersMethodgetBases

src/stats.cpp:329

↓ 8 callersMethodgetGCNumber

src/stats.cpp:357

↓ 8 callersMethodgetPostStats1

src/threadconfig.h:21

↓ 8 callersMethodgetQ20

src/stats.cpp:335

↓ 8 callersMethodgetQ30

src/stats.cpp:341

↓ 7 callersMethodaddSeq

src/nucleotidetree.cpp:42

↓ 7 callersFunctioncountMismatchesBounded

src/simd.cpp:275

↓ 7 callersMethodeof

src/read.cpp:203

↓ 6 callersMethodconsume

src/singleproducersingleconsumerlist.h:117

↓ 6 callersFunctioncountAdjacentDiffs

src/simd.cpp:267

↓ 6 callersFunctioncountMismatches

src/simd.cpp:271

↓ 6 callersMethodpassFilter

src/filter.cpp:15

↓ 6 callersMethodsetProducerFinished

src/singleproducersingleconsumerlist.h:132

↓ 5 callersMethodaddFilterResult

src/threadconfig.cpp:98

↓ 5 callersMethodbufferLength

src/writerthread.h:39

↓ 5 callersFunctioncheck_file_valid

↓ 5 callersFunctioncomplement

↓ 5 callersMethodgetPreStats1

src/threadconfig.h:20

↓ 5 callersMethodreportJson

src/stats.cpp:374

↓ 4 callersFunctioncountQualityMetrics

src/simd.cpp:255

↓ 4 callersMethodfirstIndex

src/read.cpp:87

↓ 4 callersMethodgetBytes

src/fastqreader.cpp:211

↓ 4 callersFunctiongetKnownAdapter

src/knownadapters.h:11

↓ 4 callersMethodgetQ40

src/stats.cpp:347

↓ 4 callersFunctionhuman_format

parallel.py:306

↓ 4 callersMethodlastIndex

src/read.cpp:75

↓ 4 callersMethodmarkProcessed

src/threadconfig.cpp:127

↓ 4 callersMethodoutput

src/writerthread.cpp:95

↓ 4 callersMethodreport

src/unittest.cpp:36

↓ 4 callersMethodreportHtmlContents

src/stats.cpp:783

↓ 4 callersMethodreportHtmlKMER

src/stats.cpp:624

↓ 4 callersMethodreportHtmlORA

src/stats.cpp:535

↓ 4 callersMethodreportHtmlQuality

src/stats.cpp:708

↓ 4 callersMethodsetDup

src/jsonreporter.cpp:12

↓ 4 callersMethodtrimAndCut

src/filter.cpp:68

↓ 4 callersMethodtrimFront

src/read.cpp:69

↓ 3 callersMethodadapterCuttingEnabled

src/options.cpp:41

↓ 3 callersMethodaddAdapterTrimmed

src/filterresult.cpp:124

↓ 3 callersFunctiondirname

↓ 3 callersMethodfixMGI

src/read.cpp:160

↓ 3 callersMethodgetDominantPath

src/nucleotidetree.cpp:57

↓ 3 callersMethodincTrimmedAdapterRead

src/filterresult.cpp:182

↓ 3 callersMethodisProducerFinished

src/singleproducersingleconsumerlist.h:126

↓ 3 callersFunctionis_directory

check if a string is a directory

↓ 3 callersFunctionnum2qual

↓ 3 callersMethodreverseComplement

src/read.cpp:55

↓ 3 callersFunctionscalarCountQualityMetrics

src/simd.cpp:281

↓ 3 callersFunctionscalarReverseComplement

src/simd.cpp:296

↓ 3 callersMethodsetConsumerFinished

src/singleproducersingleconsumerlist.h:135

↓ 3 callersMethodsetReadPool

src/fastqreader.cpp:73

↓ 3 callersMethodshort_name

src/cmdline.h:747

↓ 3 callersMethodwriteString

src/writer.cpp:90

↓ 2 callersMethodaddCorrection

src/filterresult.cpp:99

↓ 2 callersFunctionbasename

↓ 2 callersMethodcanBeStopped

src/threadconfig.cpp:159

↓ 2 callersMethodevalAdapterAndReadNum

src/evaluator.cpp:308

↓ 2 callersMethodfilterByIndex

src/filter.cpp:209

↓ 2 callersFunctiongetBaseName

↓ 2 callersMethodgetCorrectionMatrix

deal with base correction results

src/filterresult.h:57

↓ 2 callersMethodgetDupRate

src/duplicate.cpp:165

↓ 2 callersMethodgetFilename

src/writerthread.h:40

↓ 2 callersMethodgetFilterReadStats

src/filterresult.h:31

↓ 2 callersMethodgetLeftInput

src/threadconfig.h:45

↓ 2 callersMethodgetPostStats2

src/threadconfig.h:23

↓ 2 callersMethodgetPreStats2

src/threadconfig.h:22

↓ 2 callersMethodgetQualHist

src/stats.cpp:353

↓ 2 callersMethodgetWriter1

src/threadconfig.h:24

↓ 2 callersMethodhas_value

src/cmdline.h:713

↓ 2 callersMethodincCorrectedReads

src/filterresult.cpp:105

↓ 2 callersMethodinitWriterForSplit

src/threadconfig.cpp:106

↓ 2 callersMethodint2seq

src/evaluator.cpp:561

↓ 2 callersMethodisCompleted

src/writerthread.cpp:58

↓ 2 callersFunctionjoinpath

↓ 2 callersMethodlength

src/sequence.cpp:20

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