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Functions451 in github.com/OpenGene/fastp

⨍ Functions 451◇ Types & classes 77

↓ 2 callersFunctionmatchFlag

(filename, flag)

↓ 2 callersMethodreadAll

src/fastareader.cpp:95

↓ 2 callersFunctionreverse

↓ 2 callersMethodrun

src/unittest.cpp:19

↓ 2 callersFunctionscalarCountAdjacentDiffs

src/simd.cpp:310

↓ 2 callersMethodseq2int

src/evaluator.cpp:573

↓ 2 callersMethodset

src/cmdline.h:715

↓ 2 callersMethodsetInsertHist

src/jsonreporter.cpp:16

↓ 2 callersMethodsetPair

src/read.cpp:198

↓ 2 callersMethodshallDetectAdapter

src/options.cpp:448

↓ 2 callersMethodsummarize

src/stats.cpp:102

↓ 2 callersFunctiontrim

↓ 2 callersMethodwrite

src/writer.cpp:98

↓ 2 callersFunctionwriteBaseCountsJson

src/filterresult.cpp:318

↓ 1 callersMethodaddMergedPairs

src/threadconfig.cpp:102

↓ 1 callersMethodaddPolyXTrimmed

src/filterresult.cpp:186

↓ 1 callersFunctionbgzfBlockSize

↓ 1 callersMethodcheckPair

src/duplicate.cpp:136

↓ 1 callersMethodcheckRead

src/duplicate.cpp:122

↓ 1 callersMethodclose

src/writer.cpp:135

↓ 1 callersFunctiondemangle

src/cmdline.h:105

↓ 1 callersMethodevaluateOverRepSeqs

src/evaluator.cpp:171

↓ 1 callersMethodevaluateReadNum

src/evaluator.cpp:178

↓ 1 callersMethodevaluateSeqLen

src/evaluator.cpp:47

↓ 1 callersMethodfastMerge

src/read.cpp:207

↓ 1 callersFunctiongenerate_summary_html

(report_dir, fastp_cmd=None)

parallel.py:160

↓ 1 callersMethodgetAdapter1

src/options.cpp:513

↓ 1 callersMethodgetAdapter2

src/options.cpp:520

↓ 1 callersMethodgetOne

src/readpool.cpp:64

↓ 1 callersMethodgetRightInput

src/threadconfig.h:46

↓ 1 callersMethodgetTotalPolyXTrimmedBases

src/filterresult.cpp:198

↓ 1 callersMethodgetTotalPolyXTrimmedReads

src/filterresult.cpp:191

↓ 1 callersMethodgetWriter2

src/threadconfig.h:25

↓ 1 callersMethodhas_set

src/cmdline.h:730

↓ 1 callersMethodinitIndexFiltering

src/options.cpp:462

↓ 1 callersFunctionisBgzf

↓ 1 callersMethodisTwoColorSystem

src/evaluator.cpp:16

↓ 1 callersMethodloadFastaAdapters

src/options.cpp:53

↓ 1 callersFunctionmain

parallel.py:567

↓ 1 callersMethodmust

src/cmdline.h:739

↓ 1 callersFunctionparseCommand

↓ 1 callersMethodparse_check

src/cmdline.h:527

↓ 1 callersMethodpolyXTrimmingEnabled

src/options.cpp:49

↓ 1 callersMethodprocess

src/peprocessor.cpp:133

↓ 1 callersMethodprocess

src/processor.cpp:13

↓ 1 callersMethodprocess

src/seprocessor.cpp:76

↓ 1 callersFunctionprocessDir

(folder, options)

↓ 1 callersMethodreportAdapterHtml

src/filterresult.cpp:380

↓ 1 callersMethodreportAdapterJson

src/filterresult.cpp:292

↓ 1 callersMethodreportHtml

src/stats.cpp:510

↓ 1 callersMethodreportPolyXTrimJson

src/filterresult.cpp:329

↓ 1 callersMethodsetInputList

src/threadconfig.cpp:67

↓ 1 callersMethodsetInputListPair

src/threadconfig.cpp:71

↓ 1 callersMethodshort_description

src/cmdline.h:755

↓ 1 callersFunctionstarts_with

↓ 1 callersFunctionstr2lower

↓ 1 callersFunctionstr_keep_valid_sequence

Remove invalid sequence characters from a string

↓ 1 callersFunctiontestSimd

src/simd.cpp:326

↓ 1 callersMethodusage

src/cmdline.h:556

↓ 1 callersMethodvalid

src/cmdline.h:734

↓ 1 callersMethodvalidate

src/options.cpp:85

MethodAdapterOptions

src/options.h:199

MethodAdapterTrimmer

src/adaptertrimmer.cpp:5

MethodBaseCorrector

src/basecorrector.cpp:4

MethodBgzfMtReader

threadBudget: max decompress threads allowed for this reader. 0 = auto (use half of available CPU cores). Caller should compute: (hardware_concurrency

MethodCorrectionOptions

src/options.h:125

FunctionCountAdjacentDiffsImpl

src/simd.cpp:162

FunctionCountMismatchesBoundedImpl

src/simd.cpp:209

FunctionCountMismatchesImpl

src/simd.cpp:187

FunctionCountQualityMetricsImpl

src/simd.cpp:54

MethodDFromV<V>>> SumsOf2Fallback

src/simd.cpp:19

MethodDuplicate

src/duplicate.cpp:9

MethodDuplicationOptions

src/options.h:34

MethodEvaluator

src/evaluator.cpp:8

MethodFastaReader

src/fastareader.cpp:6

MethodFastqReader

src/fastqreader.cpp:35

MethodFastqReaderPair

src/fastqreader.cpp:427

src/filter.cpp:7

MethodFilterResult

src/filterresult.cpp:10

MethodHtmlReporter

src/htmlreporter.cpp:8

MethodIndexFilterOptions

src/options.h:49

MethodJsonReporter

src/jsonreporter.cpp:3

MethodLockFreeListItem

src/singleproducersingleconsumerlist.h:48

MethodLowComplexityFilterOptions

src/options.h:62

src/matcher.cpp:3

MethodMergeOptions

src/options.h:22

MethodNucleotideNode

src/nucleotidetree.cpp:4

MethodNucleotideTree

src/nucleotidetree.cpp:32

src/options.cpp:9

MethodOverlapAnalysis

src/overlapanalysis.cpp:5

MethodOverrepresentedSequenceAnasysOptions

src/options.h:73

MethodPairEndProcessor

src/peprocessor.cpp:16

MethodPolyGTrimmerOptions

src/options.h:84

src/polyx.cpp:4

MethodPolyXTrimmerOptions

src/options.h:95

MethodProcessor

src/processor.cpp:5

MethodQualityCutOptions

src/options.h:134

MethodQualityFilteringOptions

src/options.h:250

MethodReadLengthFilteringOptions

src/options.h:272

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