| 7 | #include <thread> |
| 8 | |
| 9 | Options::Options(){ |
| 10 | in1 = ""; |
| 11 | in2 = ""; |
| 12 | out1 = ""; |
| 13 | out2 = ""; |
| 14 | reportTitle = "fastp report"; |
| 15 | thread = 3; |
| 16 | compression = 4; |
| 17 | phred64 = false; |
| 18 | dontOverwrite = false; |
| 19 | inputFromSTDIN = false; |
| 20 | outputToSTDOUT = false; |
| 21 | readsToProcess = 0; |
| 22 | interleavedInput = false; |
| 23 | insertSizeMax = 512; |
| 24 | overlapRequire = 30; |
| 25 | overlapDiffLimit = 5; |
| 26 | overlapDiffPercentLimit = 20; |
| 27 | verbose = false; |
| 28 | seqLen1 = 151; |
| 29 | seqLen2 = 151; |
| 30 | fixMGI = false; |
| 31 | writerBufferSize = 0x01L<<22; // 4M writer buffer for per output by default |
| 32 | } |
| 33 | |
| 34 | void Options::init() { |
| 35 | } |
nothing calls this directly
no outgoing calls
no test coverage detected