Method checkRead

src/duplicate.cpp:122–134

}

bool Duplicate::checkRead(Read* r) {
    // max mBufNum is 8 (accuracy level 6), stack-allocate to avoid heap alloc per read
    uint64 positions[8] = {0};
    int len = r->length();
    seq2intvector(r->mSeq->c_str(), len, positions);
    bool isDup = applyBloomFilter(positions);

    mTotalReads++;
    if(isDup)
        mDupReads++;

    return isDup;
}

bool Duplicate::checkPair(Read* r1, Read* r2) {
    // max mBufNum is 8 (accuracy level 6), stack-allocate to avoid heap alloc per read