| 91 | } |
| 92 | |
| 93 | void PairEndProcessor::closeOutput() { |
| 94 | if(mLeftWriter) { |
| 95 | delete mLeftWriter; |
| 96 | mLeftWriter = NULL; |
| 97 | } |
| 98 | if(mRightWriter) { |
| 99 | delete mRightWriter; |
| 100 | mRightWriter = NULL; |
| 101 | } |
| 102 | if(mMergedWriter) { |
| 103 | delete mMergedWriter; |
| 104 | mMergedWriter = NULL; |
| 105 | } |
| 106 | if(mFailedWriter) { |
| 107 | delete mFailedWriter; |
| 108 | mFailedWriter = NULL; |
| 109 | } |
| 110 | if(mOverlappedWriter) { |
| 111 | delete mOverlappedWriter; |
| 112 | mOverlappedWriter = NULL; |
| 113 | } |
| 114 | if(mUnpairedLeftWriter) { |
| 115 | delete mUnpairedLeftWriter; |
| 116 | mUnpairedLeftWriter = NULL; |
| 117 | } |
| 118 | if(mUnpairedRightWriter) { |
| 119 | delete mUnpairedRightWriter; |
| 120 | mUnpairedRightWriter = NULL; |
| 121 | } |
| 122 | } |
| 123 | |
| 124 | void PairEndProcessor::initConfig(ThreadConfig* config) { |
| 125 | if(mOptions->out1.empty()) |
nothing calls this directly
no outgoing calls
no test coverage detected