Method initOverRepSeq

src/stats.cpp:957–972

}

void Stats::initOverRepSeq() {
    map<string, long> overRepSeq;
    if(mIsRead2)
        overRepSeq = mOptions->overRepSeqs2;
    else
        overRepSeq = mOptions->overRepSeqs1;

    map<string, long>::iterator iter;
    for(iter = overRepSeq.begin(); iter!=overRepSeq.end(); iter++) {
        string seq = iter->first;
        mOverRepSeq[seq] = 0;
        long* distBuf = new long[mEvaluatedSeqLen];
        memset(distBuf, 0, sizeof(long)*mEvaluatedSeqLen);
        mOverRepSeqDist[seq] = distBuf;
    }
}

void Stats::deleteOverRepSeqDist() {
    map<string, long>::iterator iter;