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Functions12,842 in github.com/OpenMS/OpenMS

⨍ Functions 12,842◇ Types & classes 2,562

↓ 43 callersMethodsetQuantifyingTransition

src/openms/source/ANALYSIS/MRM/ReactionMonitoringTransition.cpp:384

↓ 43 callersFunctiontransform

src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/ContinuousWaveletTransformNumIntegration.h:68

↓ 43 callersMethodupdateRanges

src/openms/source/KERNEL/Mobilogram.cpp:27

↓ 42 callersFunctionappend

src/openms/include/OpenMS/DATASTRUCTURES/StringConversions.h:92

↓ 42 callersFunctionconvertPtr

Transcode the supplied C string to a xerces string pointer

src/openms/include/OpenMS/FORMAT/HANDLERS/XMLHandler.h:262

↓ 42 callersMethoddimensionsize

gives the number of rows (i.e. number of columns)

src/openms/include/OpenMS/DATASTRUCTURES/DistanceMatrix.h:392

↓ 42 callersMethodinterpolatedColorAt

src/openms_gui/source/VISUAL/MultiGradient.cpp:99

↓ 42 callersMethodread

src/openms/source/FORMAT/OSWFile.cpp:309

↓ 42 callersMethodsearchModificationsByDiffMonoMass

src/openms/source/CHEMISTRY/ModificationsDB.cpp:338

↓ 41 callersFunctionConsensusFeature

Copy constructor

src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:136

↓ 41 callersMethodgetMin

src/openms_gui/source/VISUAL/DIALOGS/Plot1DGoToDialog.cpp:71

↓ 41 callersMethodgetNTerminalModification

src/openms/source/CHEMISTRY/AASequence.cpp:1654

↓ 41 callersMethodgetSize

returns the total number of peaks

src/openms/source/KERNEL/MSExperiment.cpp:332

↓ 41 callersMethodsetProteinAccession

src/openms/source/METADATA/PeptideEvidence.cpp:88

↓ 40 callersMethodaddMSLevel

src/openms/source/FORMAT/OPTIONS/PeakFileOptions.cpp:141

↓ 40 callersFunctionclear

make the range empty, i.e. isEmpty() will be true

src/openms/include/OpenMS/KERNEL/RangeManager.h:76

↓ 40 callersMethodgetLinearIonSpectrum

src/openms/source/CHEMISTRY/SimpleTSGXLMS.cpp:120

↓ 40 callersMethodgetMax

src/openms_gui/source/VISUAL/DIALOGS/Plot1DGoToDialog.cpp:76

↓ 40 callersMethodgetProductName

src/tests/class_tests/openms/source/Fitter1D_test.cpp:63

↓ 40 callersMethodhasTag

src/openms/source/DATASTRUCTURES/Param.cpp:1636

↓ 40 callersFunctionmean

src/openms/include/OpenMS/MATH/STATISTICS/StatisticFunctions.h:94

↓ 40 callersMethodrenormalize

src/openms/source/CHEMISTRY/ISOTOPEDISTRIBUTION/IsotopeDistribution.cpp:176

↓ 39 callersMethodappendNewHeader

src/openms_gui/source/VISUAL/LogWindow.cpp:52

↓ 39 callersMethodbegin

@name Iterators */ @{ Non-mutable iterator pointing to the first bin

src/openms/include/OpenMS/MATH/STATISTICS/Histogram.h:354

↓ 39 callersMethodgetAABefore

src/openms/source/METADATA/PeptideEvidence.cpp:123

↓ 39 callersMethodgetSpectrumReference

src/openms/source/METADATA/PeptideIdentification.cpp:154

↓ 39 callersMethodoperator ()

src/openswathalgo/include/OpenMS/OPENSWATHALGO/ALGO/Scoring.h:36

↓ 39 callersMethodsetCharge

src/openms/source/FILTERING/DATAREDUCTION/FeatureFindingMetabo.cpp:165

↓ 39 callersMethodsetIdentifyingTransition

src/openms/source/ANALYSIS/MRM/ReactionMonitoringTransition.cpp:374

↓ 38 callersMethodString

src/openms/source/DATASTRUCTURES/String.cpp:23

↓ 38 callersMethodgetActive1DWidget

src/openms_gui/source/VISUAL/APPLICATIONS/TOPPViewBase.cpp:1478

↓ 38 callersMethodgetFeature

src/openms/source/ANALYSIS/OPENSWATH/DATAACCESS/MRMFeatureAccessOpenMS.cpp:76

↓ 38 callersMethodgetPolarity

src/openms/source/METADATA/IonSource.cpp:67

↓ 38 callersMethodgetScanMode

src/openms/source/METADATA/InstrumentSettings.cpp:44

↓ 38 callersMethodgetSideChainBasicity

src/openms/source/CHEMISTRY/Residue.cpp:561

↓ 38 callersMethodinsert

src/openms/source/DATASTRUCTURES/Param.cpp:302

↓ 38 callersMethodsetCTerminalModification

src/openms/source/CHEMISTRY/AASequence.cpp:1521

↓ 38 callersMethodsetMaxInt

src/openms/source/DATASTRUCTURES/Param.cpp:488

↓ 38 callersMethodsetOptions

src/openms/source/FORMAT/MzMLFile.cpp:43

↓ 38 callersMethodsetSearchEngineVersion

src/openms/source/METADATA/ProteinIdentification.cpp:863

↓ 38 callersMethodsetSignificanceThreshold

src/openms/source/METADATA/PeptideIdentification.cpp:119

↓ 38 callersMethodtoUpper

src/openms/source/DATASTRUCTURES/StringListUtils.cpp:31

↓ 37 callersMethodgetAAAfter

src/openms/source/METADATA/PeptideEvidence.cpp:133

↓ 37 callersMethodgetSuffix

src/openms/source/CHEMISTRY/AASequence.cpp:708

↓ 37 callersMethodposition

src/openms/source/FORMAT/FASTAFile.cpp:182

↓ 36 callersMethodconcatenate

src/openms/include/OpenMS/DATASTRUCTURES/String.h:472

↓ 36 callersMethodgetDoubleOption_

src/openms/source/APPLICATIONS/TOPPBase.cpp:1277

↓ 36 callersMethodgetIndex

src/openms/source/METADATA/MetaInfoRegistry.cpp:205

↓ 36 callersFunctionpopstring

cmake/Windows/Contrib/Inetc/pluginapi.c:17

↓ 36 callersFunctionppmToMass

src/openms/include/OpenMS/MATH/MISC/MathFunctions.h:309

↓ 36 callersMethodweightDatum

src/openms/source/ANALYSIS/MAPMATCHING/TransformationModel.cpp:169

↓ 35 callersMethodgetAdductsAsString

src/openms/source/DATASTRUCTURES/Compomer.cpp:196

↓ 35 callersMethodgetBins

src/openms/source/COMPARISON/SPECTRA/BinnedSpectrum.cpp:68

↓ 35 callersMethodgetCenter

src/tests/class_tests/openms/source/InterpolationModel_test.cpp:89

↓ 35 callersMethodload

src/openms_gui/source/VISUAL/ParamEditor.cpp:475

↓ 35 callersFunctionoperator==

src/openms/source/METADATA/ID/IdentifiedMolecule.cpp:14

↓ 35 callersMethodsetTermSpecificity

src/openms/source/CHEMISTRY/Ribonucleotide.cpp:143

↓ 35 callersMethodtableExists

src/openms/source/FORMAT/SqliteConnector.cpp:79

↓ 34 callersMethodMZEnd

src/openms/source/KERNEL/MSSpectrum.cpp:188

↓ 34 callersMethodaddEluent

src/openms/source/METADATA/Gradient.cpp:32

↓ 34 callersMethodempty

src/openms/source/METADATA/ID/IdentificationData.cpp:994

↓ 34 callersMethodfilterPeakMap

src/openms/source/FILTERING/TRANSFORMERS/Scaler.cpp:37

↓ 34 callersMethodgetCentroidMZ

src/openms/source/FILTERING/DATAREDUCTION/FeatureFindingMetabo.cpp:213

↓ 34 callersMethodgetMZ

src/openms/source/KERNEL/MSChromatogram.cpp:76

↓ 34 callersMethodgetPrecursorSpectrum

@brief Returns the precursor spectrum of the scan pointed to by @p iterator If there is no precursor scan the past-the-end iterator is returned.

src/openms/source/KERNEL/MSExperiment.cpp:514

↓ 34 callersMethodinc

@brief increases the bin corresponding to value @p val by @p increment @return The index of the increased bin. @exception Exceptio

src/openms/include/OpenMS/MATH/STATISTICS/Histogram.h:218

↓ 34 callersMethodmaxY

Accessor for max_ coordinate maximum

src/openms/include/OpenMS/DATASTRUCTURES/DIntervalBase.h:286

↓ 34 callersMethodminY

Accessor for max_ coordinate minimum

src/openms/include/OpenMS/DATASTRUCTURES/DIntervalBase.h:274

↓ 34 callersMethodsetDriftTimeUnit

src/openms/source/KERNEL/Mobilogram.cpp:42

↓ 34 callersMethodsetScore

src/openms/source/FILTERING/DATAREDUCTION/FeatureFindingMetabo.cpp:155

↓ 34 callersMethodsetSpectrumReference

src/openms/source/METADATA/PeptideIdentification.cpp:159

↓ 34 callersMethodsize

src/openswathalgo/source/OPENSWATHALGO/DATAACCESS/MockObjects.cpp:93

↓ 34 callersMethodtransform

src/openms/source/FORMAT/MzMLFile.cpp:168

↓ 33 callersFunctionParamEntry

Copy constructor

src/openms/include/OpenMS/DATASTRUCTURES/Param.h:55

↓ 33 callersMethodaddTag

src/openms/source/DATASTRUCTURES/Param.cpp:1598

↓ 33 callersFunctionasDouble_

Conversion of a String to a double value

src/openms/include/OpenMS/FORMAT/HANDLERS/XMLHandler.h:534

↓ 33 callersFunctiondebug

##############################################################################

src/pyOpenMS/mac_fix_dependencies.rb:56

↓ 33 callersFunctiondebug

##############################################################################

cmake/MacOSX/fix_dependencies.rb:56

↓ 33 callersMethoddrawText

src/openms_gui/source/VISUAL/MISC/GUIHelpers.cpp:137

↓ 33 callersMethodestimateFromPeptideWeight

src/openms/source/CHEMISTRY/ISOTOPEDISTRIBUTION/CoarseIsotopePatternGenerator.cpp:78

↓ 33 callersFunctionexecWithExceptionAndReset

src/openms/source/FORMAT/OMSFileStore.cpp:45

↓ 33 callersMethodfindHighestInWindow

src/openms/source/KERNEL/Mobilogram.cpp:193

↓ 33 callersMethodgetCTerminalModification

src/openms/source/CHEMISTRY/AASequence.cpp:1659

↓ 33 callersFunctiongetDefaultParameters

src/pyOpenMS/pyTOPP/MapAlignerPoseClustering.py:131

↓ 33 callersFunctionoptionalAttributeAsDouble_

@brief Assigns the attribute content to the double @a value if the attribute is present @return if the attribute was present */

src/openms/include/OpenMS/FORMAT/HANDLERS/XMLHandler.h:720

↓ 33 callersMethodsetNTerminalModification

src/openms/source/CHEMISTRY/AASequence.cpp:1485

↓ 33 callersMethodsetPeptideEvidences

src/openms/source/METADATA/PeptideHit.cpp:218

↓ 32 callersFunctionextractName

primary template

src/openms/source/ANALYSIS/OPENSWATH/TransitionTSVFile.cpp:23

↓ 32 callersMethodgetDate

src/openms/source/DATASTRUCTURES/DateTime.cpp:264

↓ 32 callersMethodgetInletType

src/openms/source/METADATA/IonSource.cpp:47

↓ 32 callersMethodgetModifications

src/openms/source/FORMAT/PepNovoInfile.cpp:161

↓ 32 callersMethodgetRange

src/openms_gui/source/VISUAL/DIALOGS/Plot2DGoToDialog.cpp:53

↓ 32 callersMethodgetTransformationModelParams

src/openms/source/ANALYSIS/QUANTITATION/AbsoluteQuantitationMethod.cpp:147

↓ 32 callersMethodpickExperiment

src/openms/source/TRANSFORMATIONS/RAW2PEAK/PeakPickerSH.cpp:27

↓ 32 callersMethodsetModel

src/openms/source/METADATA/Instrument.cpp:71

↓ 32 callersMethodsetSelected

src/openms_gui/source/VISUAL/ANNOTATION/Annotation1DItem.cpp:47

↓ 32 callersMethodspatiallyGreaterEqual

Spatially (geometrically) greater or equal operator. All coordinates must be ">=".

src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:227

↓ 32 callersFunctionsubstr

create view that references a substring of the original string

src/openms/include/OpenMS/DATASTRUCTURES/StringView.h:73

↓ 32 callersMethodsum

Returns the sum.

src/openms/include/OpenMS/MATH/STATISTICS/BasicStatistics.h:158

↓ 31 callersMethodclear

src/openms/source/FILTERING/DATAREDUCTION/DataFilters.cpp:248

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