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Functions12,842 in github.com/OpenMS/OpenMS

⨍ Functions 12,842◇ Types & classes 2,562

↓ 61 callersMethodheight

Returns the height of the area i.e. the difference of dimension one (Y).

src/openms/include/OpenMS/DATASTRUCTURES/DIntervalBase.h:326

↓ 61 callersMethodinsert

src/openms_gui/source/VISUAL/MultiGradient.cpp:57

↓ 61 callersMethodmean

Returns the mean.

src/openms/include/OpenMS/MATH/STATISTICS/BasicStatistics.h:150

↓ 61 callersMethodsetProgress

src/openms/source/CONCEPT/ProgressLogger.cpp:232

↓ 60 callersMethodhasCTerminalModification

src/openms/source/CHEMISTRY/AASequence.cpp:1675

↓ 60 callersFunctionprecisionWrapper

src/openms/include/OpenMS/CONCEPT/PrecisionWrapper.h:69

↓ 60 callersMethodsetPrecursors

src/openms/source/METADATA/SpectrumSettings.cpp:162

↓ 60 callersMethodsize

src/openms/include/OpenMS/KERNEL/MRMTransitionGroup.h:99

↓ 59 callersMethodgetIsolationWindowUpperOffset

src/openms/source/METADATA/Product.cpp:49

↓ 59 callersMethodsetPeptideIdentifications

src/openms/source/KERNEL/BaseFeature.cpp:117

↓ 59 callersFunctionsize

src/openms/include/OpenMS/KERNEL/Mobilogram.h:217

↓ 58 callersMethodfind

src/openms/include/OpenMS/DATASTRUCTURES/KDTree.h:1359

↓ 58 callersMethodgetElementIndex

Returns the element index (for element 0 or 1)

src/openms/source/DATASTRUCTURES/ChargePair.cpp:101

↓ 58 callersMethodsetCurrentIndex

src/openms_gui/source/VISUAL/LayerData1DBase.cpp:28

↓ 57 callersMethodencode

src/openms/include/OpenMS/FORMAT/Base64.h:198

↓ 56 callersMethodcontains

src/openms/source/FORMAT/FileTypes.cpp:107

↓ 56 callersMethodpop_back

src/openms/include/OpenMS/DATASTRUCTURES/ExposedVector.h:174

↓ 56 callersMethodsetMaxX

Mutator for min_ coordinate of the larger point.

src/openms/include/OpenMS/DATASTRUCTURES/DIntervalBase.h:306

↓ 56 callersMethodsetScanMode

src/openms/source/METADATA/InstrumentSettings.cpp:49

↓ 55 callersMethodgetMaxIntensity

src/openms/source/KERNEL/MassTrace.cpp:345

↓ 55 callersMethodgetMinIntensity

src/openms_gui/source/VISUAL/LayerDataBase.cpp:89

↓ 55 callersMethodgetRow

src/openms/source/FORMAT/CsvFile.cpp:62

↓ 55 callersMethodopenFile

src/openms/source/KERNEL/OnDiscMSExperiment.cpp:15

↓ 55 callersMethodsetIonizationMethod

src/openms/source/METADATA/IonSource.cpp:62

↓ 55 callersMethodsetMinY

Mutator for max_ coordinate of the smaller point

src/openms/include/OpenMS/DATASTRUCTURES/DIntervalBase.h:299

↓ 54 callersMethodMZBegin

src/openms/source/KERNEL/MSSpectrum.cpp:203

↓ 54 callersMethodcend

src/openms/include/OpenMS/DATASTRUCTURES/ExposedVector.h:117

↓ 54 callersMethodsetDateTime

src/openms/source/METADATA/ExperimentalSettings.cpp:105

↓ 54 callersFunctionsetName

Sets element's name. @note Name represents a symbol of element/atom in a periodical table. @param name A new name to be set for eleme

src/openms/include/OpenMS/CHEMISTRY/MASSDECOMPOSITION/IMS/IMSElement.h:105

↓ 54 callersMethodstart

src/openms/source/SYSTEM/StopWatch.cpp:39

↓ 53 callersMethodfromString

src/openms/source/CHEMISTRY/AASequence.cpp:1680

↓ 53 callersFunctionmedian

src/openms/include/OpenMS/MATH/STATISTICS/StatisticFunctions.h:112

↓ 53 callersMethodminX

Accessor for min_ coordinate minimum

src/openms/include/OpenMS/DATASTRUCTURES/DIntervalBase.h:268

↓ 53 callersMethodsetMaxY

Mutator for max_ coordinate of the larger point.

src/openms/include/OpenMS/DATASTRUCTURES/DIntervalBase.h:313

↓ 53 callersMethodtoStringList

src/openms/source/DATASTRUCTURES/DataValue.cpp:690

↓ 52 callersMethodappend

tools/PythonExtensionChecker.py:843

↓ 52 callersMethodconsumeSpectrum

src/tests/class_tests/openms/source/MzMLFile_test.cpp:58

↓ 52 callersMethodgetPrimaryMSRunPath

get the file path to the first MS run

src/openms/source/KERNEL/FeatureMap.cpp:394

↓ 52 callersMethodgetResults

src/openms/source/FORMAT/MascotRemoteQuery.cpp:218

↓ 52 callersMethodloadExperiment

src/openms/source/FORMAT/FileHandler.cpp:671

↓ 52 callersMethodmap

src/openms/include/OpenMS/KERNEL/DimMapper.h:673

↓ 51 callersMethodMSExperiment

src/openms/source/KERNEL/MSExperiment.cpp:24

↓ 51 callersMethodgetNumberOf

src/openms/source/CHEMISTRY/EmpiricalFormula.cpp:221

↓ 51 callersMethodhasCVTerm

src/openms/source/METADATA/CVTermList.cpp:71

↓ 51 callersMethodswap

src/openms/source/KERNEL/FeatureMap.cpp:289

↓ 50 callersFunctiongetType

src/openms/include/OpenMS/DATASTRUCTURES/OSWData.h:85

↓ 50 callersMethodsetSearchParameters

src/openms/source/METADATA/ProteinIdentification.cpp:873

↓ 50 callersMethodsize

src/openms/source/CHEMISTRY/ISOTOPEDISTRIBUTION/IsotopeDistribution.cpp:89

↓ 50 callersMethodupdate

src/openms/source/DATASTRUCTURES/Param.cpp:1180

↓ 49 callersFunctionattributeAsInt_

Converts an attribute to a Int

src/openms/include/OpenMS/FORMAT/HANDLERS/XMLHandler.h:622

↓ 49 callersMethodgetScore

! @brief Look up a score by score type All processing steps are considered, in "most recent first" order. @return A pair: sc

src/openms/include/OpenMS/METADATA/ID/ScoredProcessingResult.h:101

↓ 49 callersMethodsetPrimaryMSRunPath

set the file path to the primary MS run (usually the mzML file obtained after data conversion from raw files)

src/openms/source/KERNEL/FeatureMap.cpp:356

↓ 48 callersMethoddigest

src/openms/source/CHEMISTRY/RNaseDigestion.cpp:155

↓ 48 callersMethodexecuteStatement

src/openms/source/FORMAT/SqliteConnector.cpp:107

↓ 48 callersFunctiongetDataArrayByName

src/openms/include/OpenMS/KERNEL/SpectrumHelper.h:28

↓ 48 callersMethodgetName

src/openms/source/DATASTRUCTURES/Param.cpp:1568

↓ 48 callersMethodgetType

src/openms/source/FORMAT/FileHandler.cpp:43

↓ 48 callersMethodinsert

src/openms/include/OpenMS/DATASTRUCTURES/KDTree.h:1261

↓ 48 callersMethodmaxX

Accessor for min_ coordinate maximum

src/openms/include/OpenMS/DATASTRUCTURES/DIntervalBase.h:280

↓ 48 callersMethodshow

src/openms_gui/source/VISUAL/EnhancedTabBar.cpp:117

↓ 48 callersMethodtoXMLString

src/openms/source/FORMAT/QcMLFile.cpp:73

↓ 47 callersMethodaddPeptideEvidence

src/openms/source/METADATA/PeptideHit.cpp:228

↓ 47 callersMethodbegin

* @brief Returns iterator to first element. */

src/openms/include/OpenMS/COMPARISON/CLUSTERING/HashGrid.h:340

↓ 47 callersMethodexists

src/openms_gui/source/VISUAL/MultiGradient.cpp:242

↓ 47 callersMethodgetScore

src/openms/source/FILTERING/DATAREDUCTION/FeatureFindingMetabo.cpp:242

↓ 47 callersMethodsetName

src/openms/source/ANALYSIS/ID/HiddenMarkovModel.cpp:64

↓ 47 callersMethodsetPercentage

src/openms/source/METADATA/Gradient.cpp:81

↓ 47 callersMethodsize

returns the number of bins

src/openms/include/OpenMS/MATH/STATISTICS/Histogram.h:134

↓ 46 callersFunctiona

doc/doxygen/common/csi.min.js:1

↓ 46 callersMethodempty

src/openms/source/METADATA/MetaInfo.cpp:132

↓ 46 callersMethodevaluate

src/tests/class_tests/openms/source/MapAlignmentEvaluationAlgorithm_test.cpp:31

↓ 46 callersMethodextract_value_tophat

src/openms/source/ANALYSIS/OPENSWATH/ChromatogramExtractorAlgorithm.cpp:19

↓ 46 callersMethodgetChargeState

src/openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/TransitionExperiment.h:160

↓ 46 callersMethodgetName

src/openms/source/CHEMISTRY/Ribonucleotide.cpp:68

↓ 46 callersMethodpos

src/openms/source/ANALYSIS/ID/AhoCorasickAmbiguous.cpp:613

↓ 45 callersFunctioncanvas

docu in base class

src/openms_gui/include/OpenMS/VISUAL/Plot1DWidget.h:51

↓ 45 callersMethodclear

empty all dimensions

src/openms/include/OpenMS/KERNEL/DimMapper.h:906

↓ 45 callersMethodeval

src/openms/source/MATH/MISC/BSpline2d.cpp:37

↓ 45 callersMethodgetSignificanceThreshold

src/openms/source/METADATA/PeptideIdentification.cpp:114

↓ 45 callersMethodgetTypeByFileName

src/openms/source/FORMAT/FileHandler.cpp:53

↓ 45 callersMethodisMetaEmpty

src/openms/source/METADATA/MetaInfoInterface.cpp:219

↓ 45 callersMethodrowCount

src/openms/source/FORMAT/CsvFile.cpp:84

↓ 45 callersMethodsetIsolationWindowLowerOffset

src/openms/source/METADATA/Product.cpp:44

↓ 45 callersMethodsetPeptideRef

src/openms/source/ANALYSIS/TARGETED/IncludeExcludeTarget.cpp:77

↓ 45 callersMethodsetSearchEngine

src/openms/source/METADATA/ProteinIdentification.cpp:830

↓ 45 callersMethodsort

src/openms/source/MATH/STATISTICS/ROCCurve.cpp:209

↓ 45 callersMethodvariance

Returns the variance.

src/openms/include/OpenMS/MATH/STATISTICS/BasicStatistics.h:154

↓ 44 callersMethodcolor

src/openms_gui/source/VISUAL/MultiGradient.cpp:84

↓ 44 callersMethodend

Non-mutable iterator pointing after the last bin

src/openms/include/OpenMS/MATH/STATISTICS/Histogram.h:357

↓ 44 callersMethodend

Attention: iterations will only performed over the reference spectrum. * You will have to use the "distance"-function in order to get the co

src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/IsotopeWaveletTransform.h:167

↓ 44 callersMethodintersects

@brief Checks how this range intersects with another @p range. @param range The max_ range. */

src/openms/include/OpenMS/DATASTRUCTURES/DRange.h:199

↓ 44 callersMethodsetDetectingTransition

src/openms/source/ANALYSIS/MRM/ReactionMonitoringTransition.cpp:364

↓ 44 callersMethodsetIsolationWindowUpperOffset

src/openms/source/METADATA/Product.cpp:54

↓ 44 callersMethodsetName

src/openms/source/FORMAT/MzTabBase.cpp:291

↓ 44 callersMethodsortSpectra

@name Sorting spectra and peaks @{ @brief Sorts the data points by retention time @param sort_mz if @em true, spectra are sorted by m/z position as

src/openms/source/KERNEL/MSExperiment.cpp:368

↓ 43 callersMethodget

src/openms/include/OpenMS/DATASTRUCTURES/KDTree.h:520

↓ 43 callersMethodgetBackboneBasicityLeft

src/openms/source/CHEMISTRY/Residue.cpp:551

↓ 43 callersMethodgetDriftTimeUnit

src/openms/source/KERNEL/MSSpectrum.cpp:534

↓ 43 callersMethodgetMonoMass

src/openms/source/CHEMISTRY/Ribonucleotide.cpp:78

↓ 43 callersFunctionload

src/openms/include/OpenMS/FORMAT/DTAFile.h:55

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