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Functions12,842 in github.com/OpenMS/OpenMS

⨍ Functions 12,842◇ Types & classes 2,562

↓ 93 callersMethodgetDriftTime

src/openms/source/KERNEL/MSSpectrum.cpp:549

↓ 93 callersFunctionupdateMembers_

src/openms/include/OpenMS/FILTERING/TRANSFORMERS/LinearResampler.h:136

↓ 92 callersMethodRTBegin

@brief Fast search for spectrum range begin Returns the first scan which has equal or higher (>=) RT than @p rt. @note Make sure the spectra are

src/openms/source/KERNEL/MSExperiment.cpp:155

↓ 92 callersMethodprefix

src/openms/source/DATASTRUCTURES/String.cpp:184

↓ 91 callersMethodreplace

src/openms/source/FORMAT/ParamCTDFile.cpp:348

↓ 91 callersMethodsetSectionDescription

src/openms/source/DATASTRUCTURES/Param.cpp:1404

↓ 90 callersMethodaddScore

src/openms/source/KERNEL/MRMFeature.cpp:65

↓ 89 callersMethodgetQuality

src/openms/source/KERNEL/Feature.cpp:64

↓ 89 callersMethodsetHigherScoreBetter

src/openms/source/METADATA/PeptideIdentification.cpp:139

↓ 88 callersMethodgetMapIndex

src/openms/source/KERNEL/FeatureHandle.cpp:48

↓ 87 callersMethodgetIntensity

src/openms/source/CHEMISTRY/ISOTOPEDISTRIBUTION/IsoSpecWrapper.cpp:132

↓ 87 callersMethodgetScore

src/openms/source/ANALYSIS/OPENSWATH/OpenSwathOSWWriter.cpp:160

↓ 87 callersMethodgetSpectrumById

src/openms/source/FORMAT/HANDLERS/IndexedMzMLHandler.cpp:238

↓ 86 callersMethodaddTransition

src/openms/source/ANALYSIS/TARGETED/TargetedExperiment.cpp:516

↓ 85 callersMethodaddPoint

src/openms/source/DATASTRUCTURES/ConvexHull2D.cpp:161

↓ 84 callersMethodgetBoundingBox

returns the bounding box of the convex hull points

src/openms/source/DATASTRUCTURES/ConvexHull2D.cpp:137

↓ 84 callersMethodsetType

src/openms/source/METADATA/IonDetector.cpp:53

↓ 83 callersMethodgetModificationName

src/openms/source/CHEMISTRY/ModificationDefinition.cpp:97

↓ 83 callersMethodgetOrigin

src/openms/source/CHEMISTRY/Ribonucleotide.cpp:108

↓ 82 callersFunctionaddDataProcessing_

Data processing setter for peak maps

src/openms_gui/include/OpenMS/VISUAL/PlotCanvas.h:897

↓ 81 callersFunctioncontains

is @p value within [min, max]?

src/openms/include/OpenMS/KERNEL/RangeManager.h:88

↓ 81 callersMethodgetMinRT

returns the minimal retention time value

src/openms/source/KERNEL/MSExperiment.cpp:320

↓ 81 callersMethodgetY

Name accessor for the second dimension. Only for DPosition<2>, for visualization.

src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:149

↓ 81 callersMethodisNull

src/openms/source/FORMAT/MzTab.cpp:33

↓ 81 callersMethodsize

* @brief Return number of elements. */

src/openms/include/OpenMS/COMPARISON/CLUSTERING/HashGrid.h:390

↓ 81 callersMethodtoFloat

src/openms/source/DATASTRUCTURES/String.cpp:304

↓ 80 callersMethodisSorted

src/openms/source/KERNEL/Mobilogram.cpp:81

↓ 79 callersMethodhas

src/openms/source/CHEMISTRY/AASequence.cpp:753

↓ 79 callersMethodintegratePeak

src/openms/source/ANALYSIS/OPENSWATH/PeakIntegrator.cpp:22

↓ 79 callersMethodpasses

src/openms/source/FILTERING/DATAREDUCTION/DataFilters.cpp:269

↓ 78 callersMethodend

return the end-iterator

src/openms/include/OpenMS/KERNEL/AreaIterator.h:62

↓ 77 callersMethodPosBegin

src/openms/source/KERNEL/Mobilogram.cpp:270

↓ 77 callersMethodgetMaxMZ

returns the maximal m/z value

src/openms/source/KERNEL/MSExperiment.cpp:314

↓ 77 callersMethodsize

Returns the size of spectra. */

src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/IsotopeWaveletTransform.h:134

↓ 76 callersMethodgetDiffMonoMass

src/openms/source/CHEMISTRY/ResidueModification.cpp:469

↓ 76 callersMethodgetRT

src/openms/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteredPeak.cpp:33

↓ 76 callersMethodgetRT

returns the retention time of the current scan

src/openms/include/OpenMS/KERNEL/AreaIterator.h:242

↓ 75 callersMethodgetKeys

src/openms/source/METADATA/MetaInfo.cpp:112

↓ 75 callersMethodgetMinMZ

returns the minimal m/z value

src/openms/source/KERNEL/MSExperiment.cpp:308

↓ 75 callersMethodgetWeight

src/openms/source/CHEMISTRY/WeightWrapper.cpp:43

↓ 75 callersMethodsetMaxFloat

src/openms/source/DATASTRUCTURES/Param.cpp:508

↓ 75 callersMethodwrite

src/openms/source/FORMAT/XTandemInfile.cpp:53

↓ 74 callersMethodaddChromatogram

adds a chromatogram to the list

src/openms/source/KERNEL/MSExperiment.cpp:646

↓ 74 callersMethodgetEnzyme

@name Accessors */ @{ returns a pointer to the enzyme with name (supports synonym names) @throw Exception::ElementNotFound if enzyme is unknown @n

src/openms/include/OpenMS/CHEMISTRY/DigestionEnzymeDB.h:72

↓ 74 callersMethodgetMaxRT

returns the maximal retention time value

src/openms/source/KERNEL/MSExperiment.cpp:326

↓ 74 callersMethodgetX

Name accessor for the first dimension. Only for DPosition<2>, for visualization.

src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:142

↓ 74 callersMethodsetEnzyme

src/openms/source/METADATA/Digestion.cpp:54

↓ 74 callersMethodtoLower

src/openms/source/DATASTRUCTURES/StringListUtils.cpp:36

↓ 73 callersMethodcbegin

src/openms/include/OpenMS/DATASTRUCTURES/ExposedVector.h:113

↓ 73 callersMethodend

* @brief Returns iterator to first element. */

src/openms/include/OpenMS/COMPARISON/CLUSTERING/HashGrid.h:366

↓ 73 callersMethodgetCode

src/openms/source/CHEMISTRY/Ribonucleotide.cpp:58

↓ 73 callersMethodgetResidue

src/openms/source/CHEMISTRY/ResidueDB.cpp:40

↓ 73 callersMethodgetUnit

src/openms/source/METADATA/MetaInfoRegistry.cpp:252

↓ 73 callersMethodprecision

src/openms/include/OpenMS/DATASTRUCTURES/StringConversions.h:38

↓ 73 callersMethodrend

src/openms/source/KERNEL/ConsensusFeature.cpp:369

↓ 73 callersMethodsetValue

src/openms/include/OpenMS/DATASTRUCTURES/Matrix.h:149

↓ 73 callersMethodtoBracketString

src/openms/source/CHEMISTRY/AASequence.cpp:208

↓ 72 callersMethodgetMass

src/openms/source/METADATA/Sample.cpp:175

↓ 72 callersMethodgetOverallQuality

src/openms/source/KERNEL/Feature.cpp:54

↓ 72 callersFunctionround

src/openms/include/OpenMS/MATH/MISC/MathFunctions.h:184

↓ 72 callersMethodsetSubordinates

src/openms/source/KERNEL/Feature.cpp:204

↓ 71 callersMethodgetFeature

src/openswathalgo/source/OPENSWATHALGO/DATAACCESS/MockObjects.cpp:51

↓ 70 callersMethodgetIntensity

src/openms/source/ANALYSIS/OPENSWATH/DATAACCESS/MRMFeatureAccessOpenMS.cpp:54

↓ 70 callersMethodgetPeakData

src/openms_gui/source/VISUAL/LayerDataPeak.cpp:275

↓ 70 callersMethodgetSample

src/openms/source/METADATA/ExperimentalDesign.cpp:591

↓ 70 callersFunctiongetUniqueId

Non-mutable access to unique id - returns the unique id.

src/openms/include/OpenMS/CONCEPT/UniqueIdInterface.h:77

↓ 70 callersMethodsetAccession

src/openms/source/METADATA/CVTerm.cpp:41

↓ 70 callersMethodsetData

src/openms/include/OpenMS/MATH/MISC/LinearInterpolation.h:304

↓ 70 callersMethodwidth

Returns the width of the area i.e. the difference of dimension zero (X).

src/openms/include/OpenMS/DATASTRUCTURES/DIntervalBase.h:320

↓ 69 callersMethodsetDriftTime

src/openms/source/KERNEL/MSSpectrum.cpp:554

↓ 68 callersFunctionAA

Default C'tor; creates an invalid AA

src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:101

↓ 68 callersMethodgetComment

src/openms/source/METADATA/HPLC.cpp:97

↓ 68 callersMethodgetCurrentLayer

src/openms_gui/source/VISUAL/APPLICATIONS/TOPPViewBase.cpp:1838

↓ 68 callersMethodgetPeptideRef

src/openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/TransitionExperiment.h:53

↓ 68 callersMethodgetXLinkIonSpectrum

src/openms/source/CHEMISTRY/SimpleTSGXLMS.cpp:253

↓ 68 callersMethodsetComment

src/openms/source/METADATA/HPLC.cpp:102

↓ 67 callersMethodclear

src/openms/source/CHEMISTRY/NASequence.cpp:348

↓ 67 callersMethodsetModification

src/openms/source/CHEMISTRY/Residue.cpp:436

↓ 66 callersMethodRTEnd

@brief Fast search for spectrum range end (returns the past-the-end iterator) Returns the first scan which has higher (>) RT than @p rt. @note M

src/openms/source/KERNEL/MSExperiment.cpp:169

↓ 66 callersMethodextractProteinAccessionsSet

src/openms/source/METADATA/PeptideHit.cpp:271

↓ 66 callersMethodsetMinX

Mutator for min_ coordinate of the smaller point

src/openms/include/OpenMS/DATASTRUCTURES/DIntervalBase.h:292

↓ 65 callersFunctionattributeAsDouble_

Converts an attribute to a double

src/openms/include/OpenMS/FORMAT/HANDLERS/XMLHandler.h:630

↓ 65 callersMethodbegin

Attention: iterations will only performed over the reference spectrum. * You will have to use the "distance"-function in order to get the co

src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/IsotopeWaveletTransform.h:174

↓ 65 callersMethodgetVersion

src/openms/source/SYSTEM/PythonInfo.cpp:88

↓ 64 callersMethodaddCVTerm

src/openms/source/METADATA/CVTermList.cpp:26

↓ 64 callersMethodfitModel

src/openms/source/ANALYSIS/MAPMATCHING/TransformationDescription.cpp:66

↓ 64 callersMethodhasNTerminalModification

src/openms/source/CHEMISTRY/AASequence.cpp:1670

↓ 64 callersMethodloadFromOBO

src/openms/source/FORMAT/ControlledVocabulary.cpp:149

↓ 64 callersMethodsetQuality

src/openms/source/KERNEL/Feature.cpp:70

↓ 63 callersMethodempty

src/openms/source/DATASTRUCTURES/Param.cpp:1033

↓ 63 callersMethodgetAverageWeight

src/openms/source/CHEMISTRY/Residue.cpp:349

↓ 62 callersMethodPosEnd

src/openms/source/KERNEL/Mobilogram.cpp:290

↓ 62 callersMethodgetIonizationMethod

src/openms/source/METADATA/IonSource.cpp:57

↓ 62 callersMethodvalue

internal representation (mostly for illustrative purposes)

src/openms/include/OpenMS/DATASTRUCTURES/FlagSet.h:196

↓ 61 callersMethodassign

src/openms/include/OpenMS/DATASTRUCTURES/DIntervalBase.h:155

↓ 61 callersFunctioncount

src/openswathalgo/include/OpenMS/OPENSWATHALGO/ALGO/StatsHelpers.h:176

↓ 61 callersMethodempty

src/openms/source/KERNEL/ConsensusFeature.cpp:384

↓ 61 callersMethodgetIsolationWindowLowerOffset

src/openms/source/METADATA/Product.cpp:39

↓ 61 callersMethodgetPrecursorMZ

src/openms/source/ANALYSIS/TARGETED/IncludeExcludeTarget.cpp:102

↓ 61 callersMethodgetProductMZ

src/openms/source/ANALYSIS/TARGETED/IncludeExcludeTarget.cpp:127

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