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Functions12,842 in github.com/OpenMS/OpenMS

⨍ Functions 12,842◇ Types & classes 2,562

↓ 201 callersMethodpush_back

src/openms/include/OpenMS/DATASTRUCTURES/ExposedVector.h:161

↓ 200 callersMethodsetScore

sets the score of the protein hit

src/openms/source/METADATA/ProteinHit.cpp:103

↓ 195 callersMethodappend

src/openms_gui/source/VISUAL/TOPPASVertex.cpp:67

↓ 195 callersMethodsetMSLevel

src/openms/source/KERNEL/MSSpectrum.cpp:564

↓ 194 callersMethodsetIdentifier

src/openms/source/METADATA/Acquisition.cpp:31

↓ 193 callersMethodset

src/openms/source/FORMAT/MzTab.cpp:282

↓ 190 callersMethodsetUniqueId

src/openms/source/CONCEPT/UniqueIdInterface.cpp:16

↓ 187 callersFunctionconcatenate

src/openms/include/OpenMS/DATASTRUCTURES/ListUtils.h:183

↓ 186 callersMethodmain

src/openms/source/APPLICATIONS/TOPPBase.cpp:138

↓ 184 callersMethodcopy

src/openms/source/DATASTRUCTURES/Param.cpp:761

↓ 181 callersMethodrun

src/tests/class_tests/openms/source/FeatureFinderAlgorithm_test.cpp:34

↓ 178 callersMethodadd

Add a.amount of Adduct @param a to Compomer's @param side and update its properties

src/openms/source/DATASTRUCTURES/Compomer.cpp:70

↓ 177 callersMethodempty

src/openms/source/CHEMISTRY/AASequence.cpp:893

↓ 175 callersMethodgetCharge

src/openms/source/ANALYSIS/ID/AccurateMassSearchEngine.cpp:118

↓ 174 callersMethodsetCharge

src/openms/source/METADATA/Precursor.cpp:203

↓ 172 callersMethodgetDefaults

Get default params for the Emg1D fitting

src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgScoring.h:51

↓ 167 callersFunctionoptionalAttributeAsString_

@brief Assigns the attribute content to the String @a value if the attribute is present @return if the attribute was present */

src/openms/include/OpenMS/FORMAT/HANDLERS/XMLHandler.h:672

↓ 166 callersMethodisEmpty

src/openms/source/CHEMISTRY/EmpiricalFormula.cpp:365

↓ 164 callersFunctionToolDescription

src/openms/include/OpenMS/DATASTRUCTURES/ToolDescription.h:120

↓ 163 callersMethodsetValue

src/openms/source/FORMAT/MzTabBase.cpp:296

↓ 162 callersMethodtoString

src/openms/source/FORMAT/TriqlerFile.cpp:387

↓ 161 callersMethodgetNrSpectra

src/openms/source/FORMAT/CachedMzML.cpp:97

↓ 158 callersMethodtoUnmodifiedString

src/openms/source/CHEMISTRY/AASequence.cpp:135

↓ 157 callersFunctiongetProductName

get the identifier for this DefaultParamHandler

src/openms/include/OpenMS/COMPARISON/SPECTRA/PeakAlignment.h:58

↓ 157 callersMethodgetScoreType

src/openms/source/FORMAT/PercolatorOutfile.cpp:27

↓ 156 callersMethodgetIntensity

src/openms/source/ANALYSIS/TOPDOWN/PeakGroup.cpp:868

↓ 156 callersMethodtoString

src/openms_gui/source/VISUAL/TOPPASEdge.cpp:68

↓ 154 callersMethodgetModification

src/openms/source/CHEMISTRY/Residue.cpp:477

↓ 154 callersMethodsetNativeID

src/openms/source/METADATA/SpectrumSettings.cpp:209

↓ 153 callersMethodgetType

src/openms/source/KERNEL/MSSpectrum.cpp:101

↓ 152 callersMethodisValid

src/openms/source/FORMAT/XMLFile.cpp:238

↓ 150 callersMethodsetOverallQuality

src/openms/source/KERNEL/Feature.cpp:59

↓ 149 callersMethodconvert

src/openms/source/KERNEL/ConversionHelper.cpp:13

↓ 144 callersMethodgetFeatures

src/tests/class_tests/openms/source/FeatureFinderAlgorithm_test.cpp:51

↓ 143 callersFunctioncreate

src/openms/include/OpenMS/COMPARISON/SPECTRA/PeakAlignment.h:55

↓ 142 callersMethodend

src/openms/source/DATASTRUCTURES/Param.cpp:1430

↓ 140 callersMethodencloses

src/openms/source/KERNEL/Feature.cpp:138

↓ 140 callersMethodisModified

src/openms/source/CHEMISTRY/Residue.cpp:586

↓ 138 callersMethodgroup

src/tests/class_tests/openms/source/FeatureGroupingAlgorithm_test.cpp:31

↓ 137 callersMethodgetRT

src/openms/source/FILTERING/CALIBRATION/MZTrafoModel.cpp:100

↓ 135 callersMethodgetElement

src/openms/source/CHEMISTRY/ElementDB.cpp:55

↓ 135 callersMethodgetString

src/openms/source/ANALYSIS/RNPXL/RNPxlReport.cpp:15

↓ 134 callersMethodgetIntensity

src/openms/source/FORMAT/HANDLERS/FidHandler.cpp:47

↓ 133 callersMethodgetValue

src/openms_gui/source/VISUAL/Painter2DBase.cpp:294

↓ 133 callersMethodrows

src/openms/include/OpenMS/DATASTRUCTURES/Matrix.h:232

↓ 132 callersFunctionMatch

Matches the string with the pattern, caching the compiled regexp.

src/tests/coding/cpplint.py:1029

↓ 132 callersFunctionSearch

Searches the string for the pattern, caching the compiled regexp.

src/tests/coding/cpplint.py:1057

↓ 131 callersMethodgetIsotopeDistribution

src/openms/source/CHEMISTRY/EmpiricalFormula.cpp:195

↓ 131 callersFunctionwriteXMLEscape

src/openms/source/FORMAT/ParamXMLFile.cpp:20

↓ 130 callersFunctionoperator=

Detailed constructor

src/openms/include/OpenMS/CHEMISTRY/DigestionEnzyme.h:40

↓ 130 callersMethodrbegin

src/openms/source/KERNEL/ConsensusFeature.cpp:359

↓ 127 callersMethodappend

src/openms/source/DATASTRUCTURES/ToolDescription.cpp:67

↓ 127 callersMethodcompute

src/openms/source/QC/TIC.cpp:19

↓ 127 callersMethodinsertHit

src/openms/source/METADATA/PeptideIdentification.cpp:94

↓ 125 callersMethoderase

Note: this uses the find() to location the item you want to erase. find() compares by equivalence of location ONLY. See the comments above find_exact

src/openms/include/OpenMS/DATASTRUCTURES/KDTree.h:1312

↓ 124 callersMethodempty

src/openms/include/OpenMS/DATASTRUCTURES/KDTree.h:1198

↓ 122 callersMethodclear

src/openms_gui/source/VISUAL/DIATreeTab.cpp:326

↓ 122 callersFunctionconvert

src/openms/include/OpenMS/DATASTRUCTURES/ListUtils.h:234

↓ 121 callersMethodapply

src/openms/source/ANALYSIS/ID/FalseDiscoveryRate.cpp:55

↓ 121 callersMethodsetMinInt

src/openms/source/DATASTRUCTURES/Param.cpp:478

↓ 120 callersMethodbegin

src/openms/source/KERNEL/ConsensusFeature.cpp:339

↓ 119 callersMethodsetPosition

src/openms/source/FORMAT/FASTAFile.cpp:187

↓ 117 callersMethodremoveMetaValue

src/openms/source/METADATA/MetaInfoInterface.cpp:234

↓ 116 callersFunctionPeak1D

@name Constructors and Destructor @{ Default constructor

src/openms/include/OpenMS/KERNEL/Peak1D.h:46

↓ 116 callersMethodsetHits

src/openms/source/FORMAT/MascotInfile.cpp:390

↓ 115 callersMethodsetScoreType

src/openms/source/METADATA/PeptideIdentification.cpp:129

↓ 115 callersMethodsize

src/openms/source/KERNEL/ConsensusFeature.cpp:334

↓ 114 callersMethodgetNrChromatograms

src/openms/source/FORMAT/CachedMzML.cpp:102

↓ 114 callersMethodsetY

Name mutator for the second dimension. Only for DPosition<2>, for visualization.

src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:163

↓ 113 callersMethodsize

src/openms/source/DATASTRUCTURES/Param.cpp:402

↓ 113 callersMethodupdateRanges

src/tests/class_tests/openms/source/RangeManager_test.cpp:47

↓ 112 callersMethodgetDescription

returns the description of the protein

src/openms/source/METADATA/ProteinHit.cpp:91

↓ 112 callersMethodhasSuffix

src/openms/source/CHEMISTRY/AASequence.cpp:826

↓ 110 callersMethodsize

src/openms/source/ANALYSIS/QUANTITATION/KDTreeFeatureMaps.cpp:57

↓ 109 callersMethodexists

src/openms/source/SYSTEM/File.cpp:132

↓ 109 callersMethodgetValue

src/openms/include/OpenMS/DATASTRUCTURES/Matrix.h:139

↓ 108 callersMethodend

src/openms/source/KERNEL/ConsensusFeature.cpp:349

↓ 108 callersMethodgetRank

returns the rank of the protein hit

src/openms/source/METADATA/ProteinHit.cpp:73

↓ 108 callersMethodsetX

Name mutator for the first dimension. Only for DPosition<2>, for visualization.

src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:156

↓ 104 callersMethodsize

src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/MRMFeatureAccessOpenMS.h:105

↓ 104 callersMethodsortByPosition

src/openms/source/KERNEL/Mobilogram.cpp:72

↓ 103 callersMethodgetCharge

src/openms/source/FILTERING/DATAREDUCTION/FeatureFindingMetabo.cpp:160

↓ 103 callersMethodgetChromatogram

src/openms/source/FORMAT/CachedMzML.cpp:80

↓ 103 callersMethodgetFormula

src/openms/source/CHEMISTRY/Residue.cpp:303

↓ 101 callersMethodfindNearest

src/openms/source/KERNEL/Mobilogram.cpp:86

↓ 100 callersMethodgetMZ

src/openms/source/CHEMISTRY/AdductInfo.cpp:58

↓ 100 callersMethodisHigherScoreBetter

src/openms/source/METADATA/PeptideIdentification.cpp:134

↓ 99 callersMethodgetConvexHulls

src/openms/source/FILTERING/DATAREDUCTION/FeatureFindingMetabo.cpp:79

↓ 99 callersFunctionswap

src/openms/include/OpenMS/KERNEL/Mobilogram.h:222

↓ 98 callersFunctionend

src/openms/include/OpenMS/KERNEL/MassTrace.h:93

↓ 98 callersMethodsuffix

src/openms/source/DATASTRUCTURES/Param.cpp:412

↓ 97 callersFunctionbegin

src/openms/include/OpenMS/KERNEL/MassTrace.h:88

↓ 97 callersMethodstartProgress

src/openms/source/CONCEPT/ProgressLogger.cpp:224

↓ 96 callersMethodgetTermSpecificity

src/openms/source/CHEMISTRY/Ribonucleotide.cpp:138

↓ 95 callersMethodbegin

src/openms/source/DATASTRUCTURES/Param.cpp:1425

↓ 95 callersMethodgetId

src/openms/source/DATASTRUCTURES/QTCluster.cpp:47

↓ 95 callersMethodsetMissedCleavages

src/openms/source/FORMAT/MascotInfile.cpp:450

↓ 94 callersMethodcols

Number of columns

src/openms/include/OpenMS/DATASTRUCTURES/Matrix.h:238

↓ 94 callersMethodendProgress

src/openms/source/CONCEPT/ProgressLogger.cpp:255

↓ 94 callersMethodopen

src/openms/source/FORMAT/GzipIfstream.cpp:57

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