Method convert

src/openms/source/KERNEL/ConversionHelper.cpp:13–49

namespace OpenMS
{
  void MapConversion::convert(UInt64 const input_map_index,
                              PeakMap& input_map,
                              ConsensusMap& output_map,
                              Size n)
  {
    output_map.clear(true);

    // see @todo above
    output_map.setUniqueId();

    input_map.updateRanges(1);
    if (n > input_map.getSize())
    {
      n = input_map.getSize();
    }
    output_map.reserve(n);
    std::vector<Peak2D> tmp;
    tmp.reserve(input_map.getSize());

    // TODO Avoid tripling the memory consumption by this call
    input_map.get2DData(tmp);

    std::partial_sort(tmp.begin(),
                      tmp.begin() + n,
                      tmp.end(),
                      [](auto &left, auto &right) {Peak2D::IntensityLess cmp; return cmp(right, left);});

    for (Size element_index = 0; element_index < n; ++element_index)
    {
      output_map.push_back(ConsensusFeature(input_map_index,
                                            tmp[element_index],
                                            element_index));
    }

    output_map.getColumnHeaders()[input_map_index].size = n;
    output_map.updateRanges();
  }

  void MapConversion::convert(ConsensusMap const& input_map,
                              const bool keep_uids,