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Functions12,842 in github.com/OpenMS/OpenMS

⨍ Functions 12,842◇ Types & classes 2,562

↓ 31 callersMethodfilterPeakSpectrum

src/openms/source/FILTERING/TRANSFORMERS/Scaler.cpp:32

↓ 31 callersMethodgetBackboneBasicityRight

src/openms/source/CHEMISTRY/Residue.cpp:541

↓ 31 callersMethodgetName

src/openms_gui/source/VISUAL/TOPPASToolVertex.cpp:436

↓ 31 callersMethodgetName

src/openms_gui/source/VISUAL/DIALOGS/TOPPASVertexNameDialog.cpp:41

↓ 31 callersMethodgetParameters

src/openms/source/ANALYSIS/MAPMATCHING/TransformationModelLinear.cpp:127

↓ 31 callersMethodpick

src/openms/source/TRANSFORMATIONS/RAW2PEAK/PeakPickerCWT.cpp:1069

↓ 31 callersMethodreserve

src/openms/include/OpenMS/DATASTRUCTURES/ExposedVector.h:129

↓ 31 callersMethodsetSpectra

sets the spectrum list

src/openms/source/KERNEL/MSExperiment.cpp:600

↓ 31 callersMethodsortByIntensity

src/openms/source/KERNEL/Mobilogram.cpp:46

↓ 30 callersMethodMSSpectrum

src/openms/source/KERNEL/MSSpectrum.cpp:492

↓ 30 callersMethodensureUniqueId

src/openms/source/CONCEPT/UniqueIdInterface.cpp:22

↓ 30 callersMethodgetNumberOfSamples

src/openms/source/METADATA/ExperimentalDesign.cpp:508

↓ 30 callersMethodgetPrefix

src/openms/source/CHEMISTRY/AASequence.cpp:690

↓ 30 callersMethodgetReferenceChannel

src/tests/class_tests/openms/source/IsobaricQuantitationMethod_test.cpp:62

↓ 30 callersMethodgetUniModAccession

src/openms/source/CHEMISTRY/ResidueModification.cpp:180

↓ 30 callersMethodread

src/openms/source/FORMAT/DATAACCESS/SiriusMzTabWriter.cpp:100

↓ 30 callersMethodsetMax

@brief Mutator for maximum position @note The maximum position given here will be returned my maxPosition() after the method.

src/openms/include/OpenMS/DATASTRUCTURES/DIntervalBase.h:130

↓ 29 callersMethoddecode

///////////////////////////////////////nothing to change here, magic happenes elsewhere

src/openms/include/OpenMS/FORMAT/Base64.h:251

↓ 29 callersFunctionempty

src/openms/include/OpenMS/KERNEL/Mobilogram.h:175

↓ 29 callersMethodgetCompoundRef

src/openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/TransitionExperiment.h:58

↓ 29 callersMethodgetFile

src/openms/source/CONCEPT/Exception.cpp:81

↓ 29 callersMethodgetLine

src/openms/source/CONCEPT/Exception.cpp:96

↓ 29 callersMethodgetMassShiftCount

src/openms/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexIsotopicPeakPattern.cpp:54

↓ 29 callersMethodgetStart

src/openms/source/METADATA/PeptideEvidence.cpp:103

↓ 29 callersMethodgetTime

src/openms/source/CONCEPT/VersionInfo.cpp:112

↓ 29 callersMethodisConflicting

* indicates if these two compomers can coexist for one feature * @param cmp The other Compomer we compare to * @param side_this Indicates which

src/openms/source/DATASTRUCTURES/Compomer.cpp:108

↓ 29 callersMethodremove

src/openms_gui/source/VISUAL/MultiGradient.cpp:247

↓ 29 callersMethodsetAtBottomRow

src/openms_gui/source/VISUAL/TableView.cpp:203

↓ 29 callersMethodsetInletType

src/openms/source/METADATA/IonSource.cpp:52

↓ 29 callersMethodsetUnit

src/openms/source/METADATA/CVTerm.cpp:71

↓ 28 callersMethodbasename

src/openms/source/SYSTEM/File.cpp:329

↓ 28 callersMethodbegin

src/openswathalgo/include/OpenMS/OPENSWATHALGO/ALGO/Scoring.h:54

↓ 28 callersMethoddigestUnmodified

src/openms/source/CHEMISTRY/EnzymaticDigestion.cpp:370

↓ 28 callersMethodextend

src/openms/include/OpenMS/KERNEL/RangeManager.h:619

↓ 28 callersMethodgetCharge

src/openms/source/TRANSFORMATIONS/FEATUREFINDER/IsotopeModel.cpp:234

↓ 28 callersMethodgetLabel

src/openms/source/FILTERING/DATAREDUCTION/FeatureFindingMetabo.cpp:133

↓ 28 callersMethodgetMonoMass

src/openms/source/ANALYSIS/TOPDOWN/PeakGroup.cpp:863

↓ 28 callersMethodgetOrder

src/openms/source/METADATA/IonSource.cpp:77

↓ 28 callersMethodgetSamples

src/tests/class_tests/openms/source/BaseModel_test.cpp:70

↓ 28 callersMethodgetSourceVertex

src/openms_gui/source/VISUAL/TOPPASEdge.cpp:296

↓ 28 callersMethodhasMSLevels

src/openms/source/FORMAT/OPTIONS/PeakFileOptions.cpp:151

↓ 28 callersMethodisChildOf

src/openms/source/FORMAT/ControlledVocabulary.cpp:494

↓ 28 callersMethodload

src/openms_gui/source/VISUAL/VISUALIZER/GradientVisualizer.cpp:36

↓ 28 callersMethodsetChargeState

src/openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/TransitionExperiment.h:155

↓ 28 callersMethodsetHidden

src/openms/source/ANALYSIS/ID/HiddenMarkovModel.cpp:132

↓ 28 callersMethodsetIsotopeDistribution

src/openms/source/CHEMISTRY/Element.cpp:79

↓ 28 callersMethodsetPolarity

src/openms/source/METADATA/IonSource.cpp:72

↓ 28 callersMethodsetProduct

src/openms/source/METADATA/ChromatogramSettings.cpp:144

↓ 28 callersMethodsetSpecificity

src/openms/source/CHEMISTRY/EnzymaticDigestion.cpp:87

↓ 28 callersFunctionsum

src/openms/include/OpenMS/MATH/STATISTICS/StatisticFunctions.h:81

↓ 28 callersMethodtoUniModString

src/openms/source/CHEMISTRY/AASequence.cpp:145

↓ 28 callersFunctionxcorrArrayGetMaxPeak

src/openswathalgo/source/OPENSWATHALGO/ALGO/Scoring.cpp:85

↓ 27 callersMethodclear

src/openms/source/ANALYSIS/QUANTITATION/KDTreeFeatureMaps.cpp:72

↓ 27 callersMethodfindEntryRecursive

src/openms/source/DATASTRUCTURES/Param.cpp:285

↓ 27 callersMethodgetActivationEnergy

src/openms/source/METADATA/Precursor.cpp:118

↓ 27 callersMethodreadSpectra

src/openms/source/FORMAT/HANDLERS/MzMLSqliteHandler.cpp:349

↓ 27 callersFunctionroundDecimal

@brief rounds @p x to the next decimal power 10 ^ @p decPow @verbatim e.g.: (123.0 , 1) => 120 (123.0 , 2) => 100

src/openms/include/OpenMS/MATH/MISC/MathFunctions.h:126

↓ 27 callersMethodsetCharge

src/openms/source/ANALYSIS/ID/AccurateMassSearchEngine.cpp:123

↓ 27 callersMethodsetCompression

src/openms/source/FORMAT/OPTIONS/PeakFileOptions.cpp:166

↓ 27 callersMethodsetMapping_0

@brief Specifies the mapping from "outside" to "inside" coordinates by the following data: - <code>scale</code>: the difference in outside

src/openms/include/OpenMS/MATH/MISC/BilinearInterpolation.h:644

↓ 27 callersMethodsetMapping_1

@brief Specifies the mapping from "outside" to "inside" coordinates by the following data: - <code>scale</code>: the difference in outside

src/openms/include/OpenMS/MATH/MISC/BilinearInterpolation.h:687

↓ 27 callersMethodsetPrecursorMZ

src/openms/source/ANALYSIS/TARGETED/IncludeExcludeTarget.cpp:97

↓ 27 callersFunctiontoString

src/openms/include/OpenMS/DATASTRUCTURES/StringConversions.h:100

↓ 26 callersMethodMzMLFile

src/openms/source/FORMAT/MzMLFile.cpp:25

↓ 26 callersMethodalign

src/openms/source/ANALYSIS/SEQUENCE/NeedlemanWunsch.cpp:129

↓ 26 callersMethodchop

src/openms/source/DATASTRUCTURES/String.cpp:219

↓ 26 callersMethodestimateBackground

src/openms/source/ANALYSIS/OPENSWATH/PeakIntegrator.cpp:42

↓ 26 callersMethodgetCoverage

returns the coverage (in percent) of the protein hit based upon matched peptides

src/openms/source/METADATA/ProteinHit.cpp:97

↓ 26 callersMethodgetLayer

src/openms_gui/source/VISUAL/SpectraIDViewTab.cpp:548

↓ 26 callersFunctiongetPPM

src/openms/include/OpenMS/MATH/MISC/MathFunctions.h:279

↓ 26 callersMethodgetQscore

src/openms/source/ANALYSIS/TOPDOWN/Qscore.cpp:16

↓ 26 callersMethodgetWidth

src/openms/source/KERNEL/BaseFeature.cpp:82

↓ 26 callersMethodinit

src/openms/source/ANALYSIS/ID/AccurateMassSearchEngine.cpp:517

↓ 26 callersFunctionintensityIteratorWrapper

src/openms/include/OpenMS/FILTERING/BASELINE/MorphologicalFilter.h:90

↓ 26 callersMethodminBound

returns the lower bound (inclusive)

src/openms/include/OpenMS/MATH/STATISTICS/Histogram.h:104

↓ 26 callersMethodreset

src/openms/source/FORMAT/HANDLERS/XMLHandler.cpp:59

↓ 26 callersMethodrow

Return the i-th row of the matrix as a vector.

src/openms/include/OpenMS/DATASTRUCTURES/Matrix.h:155

↓ 26 callersMethodsearchModifications

src/openms/source/CHEMISTRY/ModificationsDB.cpp:208

↓ 26 callersMethodsetAcceptableAbsolute

src/openms/source/CONCEPT/FuzzyStringComparator.cpp:76

↓ 26 callersMethodsetHullPoints

src/openms/source/DATASTRUCTURES/ConvexHull2D.cpp:119

↓ 26 callersMethodsetOrigin

src/openms/source/CHEMISTRY/Ribonucleotide.cpp:113

↓ 26 callersMethodsetProductMZ

src/openms/source/ANALYSIS/TARGETED/IncludeExcludeTarget.cpp:122

↓ 26 callersMethodstore

src/openms_gui/source/VISUAL/VISUALIZER/HPLCVisualizer.cpp:49

↓ 26 callersMethodswap

src/openms/source/ANALYSIS/TOPDOWN/PeakGroup.cpp:1068

↓ 25 callersMethodBilinearInterpolation

Default constructor

src/openms/include/OpenMS/MATH/MISC/BilinearInterpolation.h:70

↓ 25 callersFunctionMSNumpressCoder

default constructor

src/openms/include/OpenMS/FORMAT/MSNumpressCoder.h:140

↓ 25 callersMethodaddTimepoint

src/openms/source/METADATA/Gradient.cpp:56

↓ 25 callersMethodareaBeginConst

Returns a non-mutable area iterator for @p area

src/openms/source/KERNEL/MSExperiment.cpp:120

↓ 25 callersMethodassignRanks

src/openms/source/METADATA/PeptideIdentification.cpp:190

↓ 25 callersMethodcheckDefaults

src/openms/source/DATASTRUCTURES/Param.cpp:1043

↓ 25 callersMethoderror

src/openms/source/FORMAT/HANDLERS/XMLHandler.cpp:68

↓ 25 callersMethodgetCurrentLayerIndex

src/openms_gui/source/VISUAL/PlotCanvas.cpp:899

↓ 25 callersMethodgetLibraryIntensity

src/openms/source/ANALYSIS/MRM/ReactionMonitoringTransition.cpp:349

↓ 25 callersMethodmodifyStrings

src/openms/source/FORMAT/SVOutStream.cpp:135

↓ 25 callersMethodsetColor

src/openms_gui/source/VISUAL/TOPPASEdge.cpp:311

↓ 25 callersMethodsetNull

src/openms/source/FORMAT/MzTab.cpp:38

↓ 25 callersMethodstop

src/openms/source/SYSTEM/StopWatch.cpp:51

↓ 24 callersFunctionRibonucleotide

Copy constructor

src/openms/include/OpenMS/CHEMISTRY/Ribonucleotide.h:55

↓ 24 callersMethodannotate

src/openms/source/ANALYSIS/ID/IDMapper.cpp:77

↓ 24 callersMethodcheckDatumRange

src/openms/source/ANALYSIS/MAPMATCHING/TransformationModel.cpp:139

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