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Functions12,842 in github.com/OpenMS/OpenMS

↓ 24 callersMethodfeature
src/openms/source/ANALYSIS/QUANTITATION/KDTreeFeatureMaps.cpp:27
↓ 24 callersMethodfilter
src/openms/source/FILTERING/SMOOTHING/GaussFilter.cpp:45
↓ 24 callersMethodgetACAndACType
src/openms/source/FORMAT/InspectOutfile.cpp:340
↓ 24 callersMethodgetChromatogramType
src/openms/source/METADATA/ChromatogramSettings.cpp:166
↓ 24 callersMethodgetEnd
src/openms/source/METADATA/PeptideEvidence.cpp:113
↓ 24 callersMethodgetResolution
src/openms/source/METADATA/IonDetector.cpp:68
↓ 24 callersMethodgetRibonucleotide
src/openms/source/CHEMISTRY/RibonucleotideDB.cpp:415
↓ 24 callersMethodindex2key
The transformation from "inside" to "outside" coordinates.
src/openms/include/OpenMS/MATH/MISC/LinearInterpolation.h:338
↓ 24 callersMethodinsert
src/openms/source/KERNEL/ConsensusFeature.cpp:43
↓ 24 callersMethodpeptideCount
src/openms/source/CHEMISTRY/ProteaseDigestion.cpp:48
↓ 24 callersMethodsetCVIdentifierRef
src/openms/source/METADATA/CVTerm.cpp:61
↓ 24 callersMethodsetOrder
src/openms/source/METADATA/IonSource.cpp:82
↓ 24 callersMethodsetProteinIdentifications
src/openms/source/KERNEL/FeatureMap.cpp:320
↓ 24 callersMethodsetVersion
src/openms/source/METADATA/Software.cpp:57
↓ 23 callersMethodMZBegin
Attention: iterations will only performed over the reference spectrum. * You will have to use the "distance"-function in order to get the co
src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/IsotopeWaveletTransform.h:153
↓ 23 callersFunctionbeginsWith
returns true if $string begins with $begin, return false otherwise
tools/common_functions.php:46
↓ 23 callersMethodcalculateMap
src/openms/source/QC/QCBase.cpp:25
↓ 23 callersMethodend
src/openswathalgo/include/OpenMS/OPENSWATHALGO/ALGO/Scoring.h:56
↓ 23 callersMethodgetLLOQ
src/openms/source/ANALYSIS/QUANTITATION/AbsoluteQuantitationMethod.cpp:82
↓ 23 callersFunctiongetLayerCount
@name Dataset handling methods @see changeVisibility */ @{ Returns the number of layers
src/openms_gui/include/OpenMS/VISUAL/PlotCanvas.h:371
↓ 23 callersMethodgetScene
src/openms_gui/source/VISUAL/TOPPASWidget.cpp:44
↓ 23 callersMethodgetULOQ
src/openms/source/ANALYSIS/QUANTITATION/AbsoluteQuantitationMethod.cpp:87
↓ 23 callersMethodhasRT
src/openms/source/METADATA/PeptideIdentification.cpp:64
↓ 23 callersFunctionpearsonCorrelationCoefficient
src/openms/include/OpenMS/MATH/STATISTICS/StatisticFunctions.h:495
↓ 23 callersFunctionreportTestResult
Store results of tests for Ctest-Reporting */
tools/checker.php:91
↓ 23 callersMethodsetChromatogramType
src/openms/source/METADATA/ChromatogramSettings.cpp:171
↓ 23 callersMethodsetDiffMonoMass
src/openms/source/CHEMISTRY/ResidueModification.cpp:464
↓ 23 callersMethodsetMessage
src/openms/source/CONCEPT/GlobalExceptionHandler.cpp:97
↓ 23 callersMethodsetMethodOfCombination
src/openms/source/METADATA/AcquisitionInfo.cpp:33
↓ 23 callersMethodsetModifications
src/openms/source/FORMAT/MascotInfile.cpp:420
↓ 23 callersMethodsetOffset
src/openms/source/TRANSFORMATIONS/FEATUREFINDER/EmgModel.cpp:84
↓ 23 callersFunctionshow_mem
(label)
src/pyOpenMS/tests/memoryleaktests/testAll.py:14
↓ 22 callersFunctionPeak2D
Member constructor
src/openms/include/OpenMS/KERNEL/Peak2D.h:111
↓ 22 callersMethodareaEnd
Returns an invalid area iterator marking the end of an area
src/openms/source/KERNEL/MSExperiment.cpp:114
↓ 22 callersMethodbinValue
@brief returns the value of bin corresponding to the value @p val @exception Exception::OutOfRange is thrown if the value is out of valid ran
src/openms/include/OpenMS/MATH/STATISTICS/Histogram.h:206
↓ 22 callersMethodgetBestModificationByDiffMonoMass
src/openms/source/CHEMISTRY/ModificationsDB.cpp:435
↓ 22 callersMethodgetBinIndex
src/openms/source/COMPARISON/SPECTRA/BinnedSpectrum.cpp:168
↓ 22 callersMethodgetDecoyTransitionType
src/openms/source/ANALYSIS/MRM/ReactionMonitoringTransition.cpp:339
↓ 22 callersMethodgetEnzymeName
src/openms/source/FORMAT/SequestInfile.cpp:533
↓ 22 callersMethodgetMaxIntensity
src/openms_gui/source/VISUAL/LayerDataBase.cpp:94
↓ 22 callersMethodgetScanNumber
src/openms/source/ANALYSIS/TOPDOWN/PeakGroup.cpp:858
↓ 22 callersMethodgetSignalToNoise
Return to signal/noise estimate for date point @p index @note you will get a warning to stderr if more than 20% of the noise estimates used sparse win
src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimator.h:83
↓ 22 callersMethodgetTypeByContent
src/openms/source/FORMAT/FileHandler.cpp:170
↓ 22 callersMethodsetAcceptableRelative
src/openms/source/CONCEPT/FuzzyStringComparator.cpp:61
↓ 22 callersMethodsetChromatograms
sets the chromatogram list
src/openms/source/KERNEL/MSExperiment.cpp:634
↓ 22 callersMethodsetFloatDataArrays
src/openms/source/KERNEL/MSSpectrum.cpp:584
↓ 22 callersMethodsetLibraryIntensity
src/openms/source/ANALYSIS/MRM/ReactionMonitoringTransition.cpp:354
↓ 22 callersMethodsetMaxIsotope
src/openms/source/CHEMISTRY/ISOTOPEDISTRIBUTION/CoarseIsotopePatternGenerator.cpp:38
↓ 22 callersMethodsetRank
sets the rank
src/openms/source/METADATA/ProteinHit.cpp:109
↓ 22 callersMethodsetWidth
src/openms/source/KERNEL/BaseFeature.cpp:87
↓ 22 callersFunctiontestCase
src/tests/class_tests/openms/source/AhoCorasickAmbiguous_test.cpp:56
↓ 21 callersMethodFeatureMap
src/openms/source/KERNEL/FeatureMap.cpp:75
↓ 21 callersFunctionSTART_SECTION
src/tests/class_tests/openms/source/QcMLFile_test.cpp:26
↓ 21 callersMethodcalculatePeakShapeMetrics
src/openms/source/ANALYSIS/OPENSWATH/PeakIntegrator.cpp:62
↓ 21 callersMethoddataToWidget
src/openms_gui/source/VISUAL/Plot1DCanvas.cpp:215
↓ 21 callersMethodfromString
src/openms_gui/source/VISUAL/MultiGradient.cpp:179
↓ 21 callersMethodgetCorrelationCoefficient
src/openms/source/ANALYSIS/QUANTITATION/AbsoluteQuantitationMethod.cpp:167
↓ 21 callersMethodgetEdgeScore
Returns the ILP edge score
src/openms/source/DATASTRUCTURES/ChargePair.cpp:151
↓ 21 callersMethodgetLayerCount
src/openms_gui/source/VISUAL/PlotCanvas.cpp:909
↓ 21 callersMethodgetNPoints
src/openms/source/ANALYSIS/QUANTITATION/AbsoluteQuantitationMethod.cpp:162
↓ 21 callersMethodgetTargetVertex
src/openms_gui/source/VISUAL/TOPPASEdge.cpp:301
↓ 21 callersMethodgetValue
src/openms/include/OpenMS/ANALYSIS/ID/SiriusAdapterAlgorithm.h:229
↓ 21 callersMethodisIntersected
@brief Checks whether this range intersects with another @p range. @param range The max_ range. @returns True if the areas intersec
src/openms/include/OpenMS/DATASTRUCTURES/DRange.h:241
↓ 21 callersMethodoperator[]
src/openms/source/ANALYSIS/QUANTITATION/KDTreeFeatureNode.cpp:36
↓ 21 callersMethodsetConvexHulls
src/openms/source/KERNEL/Feature.cpp:87
↓ 21 callersMethodsetName
src/openms/source/CHEMISTRY/Residue.cpp:72
↓ 21 callersMethodsetUnassignedPeptideIdentifications
src/openms/source/KERNEL/FeatureMap.cpp:335
↓ 21 callersFunctionwrittenDigits
src/openms/include/OpenMS/CONCEPT/Types.h:268
↓ 20 callersMethodapplyFunctionOnPeptideIDs
src/openms/include/OpenMS/DATASTRUCTURES/Utils/MapUtilities.h:42
↓ 20 callersMethodenlarge
Enlarges the bounding box such that it contains a position.
src/openms/include/OpenMS/DATASTRUCTURES/DBoundingBox.h:95
↓ 20 callersMethodfindParentOf
src/openms/source/DATASTRUCTURES/Param.cpp:245
↓ 20 callersFunctiongetARGP820102
@brief Signal sequence helical potential (Argos et al., 1982) LIT:0901079b PMID:7151796<br> Argos, P., Rao, J.K.M. and Hargrave, P.A.<br>
src/openms/include/OpenMS/CHEMISTRY/AAIndex.h:875
↓ 20 callersMethodgetClockTime
getClockTime returns the current amount of real (clock) time accumulated by this stop_watch. If the stop_watch is stopped, this is just the total acc
src/openms/source/SYSTEM/StopWatch.cpp:138
↓ 20 callersFunctiongetCurrentLayerIndex
returns the index of the active layer
src/openms_gui/include/OpenMS/VISUAL/PlotCanvas.h:286
↓ 20 callersFunctiongetFAUJ880111
@brief Positive charge (Fauchere et al., 1988) LIT:1414114 PMID:3209351<br> Fauchere, J.L., Charton, M., Kier, L.B., Verloop, A. and Plis
src/openms/include/OpenMS/CHEMISTRY/AAIndex.h:704
↓ 20 callersFunctiongetFINA770101
@brief Helix-coil equilibrium constant (Finkelstein-Ptitsyn, 1977) LIT:2004052b PMID:843599<br> Finkelstein, A.V. and Ptitsyn, O.B.<br>
src/openms/include/OpenMS/CHEMISTRY/AAIndex.h:791
↓ 20 callersMethodgetIntensityRange
src/openms/source/KERNEL/ConsensusFeature.cpp:152
↓ 20 callersMethodgetModifiedResidue
src/openms/source/CHEMISTRY/ResidueDB.cpp:349
↓ 20 callersFunctiongetNADH010106
@brief Hydropathy scale based on self-information values in the two-state model (36% accessibility) (Naderi-Manesh et al., 2001) PMID:11170200<
src/openms/include/OpenMS/CHEMISTRY/AAIndex.h:283
↓ 20 callersFunctiongetNADH010107
@brief Hydropathy scale based on self-information values in the two-state model (50% accessibility) (Naderi-Manesh et al., 2001) PMID:11170200<
src/openms/include/OpenMS/CHEMISTRY/AAIndex.h:367
↓ 20 callersFunctiongetOOBM850104
@brief Optimized average non-bonded energy per atom (Oobatake et al., 1985) LIT:1207075b<br> Oobatake, M., Kubota, Y. and Ooi, T.<br>
src/openms/include/OpenMS/CHEMISTRY/AAIndex.h:619
↓ 20 callersMethodgetParsingSuccess
src/openms/source/FORMAT/HANDLERS/IndexedMzMLHandler.cpp:103
↓ 20 callersFunctiongetROBB760107
@brief Information measure for extended without H-bond (Robson-Suzuki, 1976) PMID:1003471<br> Robson, B. and Suzuki, E.<br> Conform
src/openms/include/OpenMS/CHEMISTRY/AAIndex.h:535
↓ 20 callersMethodgetRTidx
src/openms/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteredPeak.cpp:43
↓ 20 callersMethodgetState
src/openms/source/METADATA/Sample.cpp:165
↓ 20 callersMethodgetTopoNr
src/openms_gui/source/VISUAL/TOPPASVertex.cpp:539
↓ 20 callersFunctiongetVASM830103
@brief Relative population of conformational state E (Vasquez et al., 1983) LIT:0908110<br> Vasquez, M., Nemethy, G. and Scheraga, H.A.<b
src/openms/include/OpenMS/CHEMISTRY/AAIndex.h:196
↓ 20 callersFunctiongetWILM950102
@brief Hydrophobicity coefficient in RP-HPLC, C8 with 0.1%TFA/MeCN/H2O (Wilce et al. 1995) Wilce, M.C., Aguilar, M.I. and Hearn, M.T.<br>
src/openms/include/OpenMS/CHEMISTRY/AAIndex.h:452
↓ 20 callersMethodinvert
src/openms/source/ANALYSIS/MAPMATCHING/TransformationDescription.cpp:153
↓ 20 callersFunctionkeepMatchingItems
src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:492
↓ 20 callersMethodmaxBound
returns the upper bound (inclusive)
src/openms/include/OpenMS/MATH/STATISTICS/Histogram.h:110
↓ 20 callersFunctionoperator==
src/openms/source/DATASTRUCTURES/Adduct.cpp:209
↓ 20 callersMethodsetAccession
src/openms/source/FORMAT/MzTabBase.cpp:286
↓ 20 callersMethodsetExpectedSize
src/tests/class_tests/openms/source/MzMLFile_test.cpp:69
↓ 20 callersMethodsetMSLevels
src/openms/source/FORMAT/OPTIONS/PeakFileOptions.cpp:136
↓ 20 callersMethodsetMean
src/openms/include/OpenMS/MATH/STATISTICS/BasicStatistics.h:151
↓ 20 callersMethodsetPrefix
src/openms/source/CONCEPT/LogStream.cpp:510
↓ 20 callersFunctionstore
src/openms/include/OpenMS/FORMAT/DTAFile.h:166
↓ 20 callersMethoduniqueIdToIndex
@brief Returns the index of the feature with the given unique id, or Size(-1) if none exists in this random access container. The complexity is
src/openms/include/OpenMS/CONCEPT/UniqueIdIndexer.h:60
↓ 19 callersMethodaddFeature
src/openms/source/KERNEL/MRMFeature.cpp:70
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