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Functions12,842 in github.com/OpenMS/OpenMS

↓ 19 callersMethodareaEndConst
Returns an non-mutable invalid area iterator marking the end of an area
src/openms/source/KERNEL/MSExperiment.cpp:143
↓ 19 callersMethodcloneWith
@brief Clone the current object, set the area of the clone using axis data (X and Y) and return the clone. @param data New area as displayed on
src/openms/include/OpenMS/KERNEL/DimMapper.h:875
↓ 19 callersMethodcompareFiles
src/openms/source/CONCEPT/FuzzyStringComparator.cpp:589
↓ 19 callersMethodcomputeRegression
src/openms/source/MATH/STATISTICS/LinearRegression.cpp:204
↓ 19 callersMethoddomParseSpectrum
src/openms/source/FORMAT/HANDLERS/MzMLSpectrumDecoder.cpp:586
↓ 19 callersMethodestimateFWHM
src/openms/source/KERNEL/MassTrace.cpp:136
↓ 19 callersMethodexists
src/openms/source/FORMAT/ControlledVocabulary.cpp:476
↓ 19 callersMethodextractChromatograms
src/openms/source/ANALYSIS/OPENSWATH/ChromatogramExtractorAlgorithm.cpp:244
↓ 19 callersMethodfitEMGPeakModel
src/openms/source/MATH/MISC/EmgGradientDescent.cpp:729
↓ 19 callersFunctiongetAASequence
src/openms/source/ANALYSIS/TARGETED/TargetedExperimentHelper.cpp:37
↓ 19 callersMethodgetAbsChargeRange
src/openms/source/ANALYSIS/TOPDOWN/PeakGroup.cpp:848
↓ 19 callersMethodgetAllNames
returns all the enzyme names (does NOT include synonym names)
src/openms/include/OpenMS/CHEMISTRY/DigestionEnzymeDB.h:96
↓ 19 callersMethodgetChecksumType
src/openms/source/METADATA/SourceFile.cpp:95
↓ 19 callersMethodgetStringOption_
src/openms/source/APPLICATIONS/TOPPBase.cpp:1246
↓ 19 callersMethodgetTags
src/openms/source/DATASTRUCTURES/Param.cpp:1620
↓ 19 callersMethodhasMZ
src/openms/source/METADATA/PeptideIdentification.cpp:79
↓ 19 callersMethodinitialize
src/openms/source/ANALYSIS/OPENSWATH/OpenSwathScoring.cpp:87
↓ 19 callersMethodisFixedModification
src/openms/source/CHEMISTRY/ModificationDefinition.cpp:77
↓ 19 callersMethodisHidden
src/openms/source/ANALYSIS/ID/HiddenMarkovModel.cpp:127
↓ 19 callersMethodrefIdx
index into reference container
src/openms/include/OpenMS/DATASTRUCTURES/MatchedIterator.h:162
↓ 19 callersMethodremove
src/openms/source/CONCEPT/LogStream.cpp:451
↓ 19 callersMethodremove
src/openms/source/FILTERING/DATAREDUCTION/DataFilters.cpp:215
↓ 19 callersMethodsearch
src/openms/source/ANALYSIS/ID/SimpleSearchEngineAlgorithm.cpp:400
↓ 19 callersMethodsetEnd
src/openms/source/METADATA/PeptideEvidence.cpp:108
↓ 19 callersMethodsetMapping
@brief Specifies the mapping from "outside" to "inside" coordinates by the following data: - <code>scale</code>: the difference in outside coor
src/openms/include/OpenMS/MATH/MISC/LinearInterpolation.h:391
↓ 19 callersMethodsetMass
src/openms/source/METADATA/Sample.cpp:180
↓ 19 callersMethodsetMin
@brief Mutator for minimum position @note The minimum position given here will be returned my minPosition() after the method.
src/openms/include/OpenMS/DATASTRUCTURES/DIntervalBase.h:115
↓ 19 callersMethodsetStart
src/openms/source/METADATA/PeptideEvidence.cpp:98
↓ 19 callersMethodsetVariance
src/openms/include/OpenMS/MATH/STATISTICS/BasicStatistics.h:155
↓ 19 callersMethodsize
src/openms/source/FILTERING/DATAREDUCTION/SplineInterpolatedPeaks.cpp:165
↓ 19 callersMethodtoDoubleList
src/openms/source/DATASTRUCTURES/DataValue.cpp:710
↓ 19 callersFunctiontoFASTAVec
src/tests/class_tests/openms/source/PeptideIndexing_test.cpp:22
↓ 19 callersMethodupdate
src/openms_gui/source/VISUAL/TOPPViewMenu.cpp:172
↓ 18 callersMethodadd
src/openms_gui/source/VISUAL/TOPPASResources.cpp:71
↓ 18 callersMethodaddPeptide
src/openms/source/ANALYSIS/TARGETED/TargetedExperiment.cpp:495
↓ 18 callersMethodaddValue
@brief Performs linear resampling. The arg_value is split up and added to the data points around arg_pos. */
src/openms/include/OpenMS/MATH/MISC/LinearInterpolation.h:164
↓ 18 callersFunctionadjustExtractionWindow
src/openms/source/ANALYSIS/OPENSWATH/DIAHelper.cpp:22
↓ 18 callersMethodclear
src/openms/source/ANALYSIS/TOPDOWN/DeconvolvedSpectrum.cpp:266
↓ 18 callersMethodclear
src/openms/source/METADATA/ID/IdentificationData.cpp:1303
↓ 18 callersMethodcontainsInvalidReferences
src/openms/source/ANALYSIS/TARGETED/TargetedExperiment.cpp:576
↓ 18 callersFunctionendsWith
returns true if $string ends with $end, return false otherwise
tools/common_functions.php:55
↓ 18 callersMethodgetAllSearchModifications
src/openms/source/CHEMISTRY/CrossLinksDB.cpp:335
↓ 18 callersMethodgetAllowChildren
src/openms/source/DATASTRUCTURES/CVMappingTerm.cpp:114
↓ 18 callersMethodgetCentroidRT
src/openms/source/FILTERING/DATAREDUCTION/FeatureFindingMetabo.cpp:223
↓ 18 callersMethodgetIonOptics
src/openms/source/METADATA/Instrument.cpp:146
↓ 18 callersMethodgetMessage
src/openms/source/CONCEPT/Exception.cpp:91
↓ 18 callersMethodgetName
src/openms/source/METADATA/MetaInfoRegistry.cpp:285
↓ 18 callersMethodgetRT
Returns the RT value (not the index) of the associated scan. */
src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/IsotopeWaveletTransform.h:104
↓ 18 callersMethodgetTransformationModel
src/openms/source/ANALYSIS/QUANTITATION/AbsoluteQuantitationMethod.cpp:142
↓ 18 callersFunctionisValid
@brief Returns true if the unique_id is valid, false otherwise. Currently, an invalid unique id is represented by UInt64(0), but please prefer u
src/openms/include/OpenMS/CONCEPT/UniqueIdInterface.h:41
↓ 18 callersMethodsetActivationEnergy
src/openms/source/METADATA/Precursor.cpp:123
↓ 18 callersMethodsetDataPoints
src/openms/source/ANALYSIS/MAPMATCHING/TransformationDescription.cpp:122
↓ 18 callersMethodsetDataProcessing
src/openms/source/KERNEL/FeatureMap.cpp:350
↓ 18 callersMethodsetFillData
src/openms/source/FORMAT/OPTIONS/PeakFileOptions.cpp:221
↓ 18 callersMethodsetMapIndex
src/openms/source/KERNEL/FeatureHandle.cpp:53
↓ 18 callersMethodsetNameOfFile
src/openms/source/METADATA/SourceFile.cpp:55
↓ 18 callersMethodsetVerboseLevel
src/openms/source/CONCEPT/FuzzyStringComparator.cpp:115
↓ 18 callersFunctionstandardize_data
src/openswathalgo/source/OPENSWATHALGO/ALGO/Scoring.cpp:102
↓ 18 callersFunctiontypeAsString
src/openms/include/OpenMS/CONCEPT/TypeAsString.h:63
↓ 18 callersFunctionwidgetToData_
@brief Convert widget (pixel) to chart (unit) coordinates Translates widget coordinates to chart coordinates. @param x the widget co
src/openms_gui/include/OpenMS/VISUAL/PlotCanvas.h:781
↓ 17 callersMethodIdentificationHit
src/openms/source/METADATA/IdentificationHit.cpp:16
↓ 17 callersFunctionInstrumentSettings
Copy constructor
src/openms/include/OpenMS/METADATA/InstrumentSettings.h:52
↓ 17 callersFunction_testMetaInfoInterface
(what)
src/pyOpenMS/tests/unittests/test000.py:37
↓ 17 callersMethodclear
src/openms/source/METADATA/MetaInfo.cpp:137
↓ 17 callersMethodderivatives
src/openms/source/MATH/MISC/CubicSpline2d.cpp:87
↓ 17 callersMethodfit
src/tests/class_tests/openms/source/TraceFitter_test.cpp:28
↓ 17 callersMethodgetAcquisitionMode
src/openms/source/METADATA/IonDetector.cpp:58
↓ 17 callersMethodgetCombinationsLogic
src/openms/source/DATASTRUCTURES/CVMappingRule.cpp:91
↓ 17 callersMethodgetComponentName
src/openms/source/ANALYSIS/QUANTITATION/AbsoluteQuantitationMethod.cpp:117
↓ 17 callersMethodgetFeatureName
src/openms/source/ANALYSIS/QUANTITATION/AbsoluteQuantitationMethod.cpp:97
↓ 17 callersMethodgetHeight
src/tests/class_tests/openms/source/TraceFitter_test.cpp:43
↓ 17 callersMethodgetPeakIndex
returns the PeakIndex corresponding to the current iterator position
src/openms/include/OpenMS/KERNEL/AreaIterator.h:260
↓ 17 callersMethodgetRequirementLevel
src/openms/source/DATASTRUCTURES/CVMappingRule.cpp:81
↓ 17 callersMethodgetScanTime
src/openms/source/METADATA/MassAnalyzer.cpp:166
↓ 17 callersMethodgetUseTerm
src/openms/source/DATASTRUCTURES/CVMappingTerm.cpp:84
↓ 17 callersMethodinsert
* @brief Inserts a (2-dimensional coordinate, value) pair. * @param v Pair to be inserted. * @return Iterator that points to the inserted pa
src/openms/include/OpenMS/COMPARISON/CLUSTERING/HashGrid.h:298
↓ 17 callersMethodisSuperSetOf
* @brief Check if this FlagSet has at least the active bits of another @p required FlagSet */
src/openms/include/OpenMS/DATASTRUCTURES/FlagSet.h:176
↓ 17 callersMethodpeakIndexToXY
src/openms_gui/source/VISUAL/LayerDataPeak.cpp:223
↓ 17 callersMethodregisterScoreType
src/openms/source/METADATA/ID/IdentificationData.cpp:302
↓ 17 callersFunctionremoveMatchingItems
src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:485
↓ 17 callersMethodsetAAAfter
src/openms/source/METADATA/PeptideEvidence.cpp:128
↓ 17 callersMethodsetAABefore
src/openms/source/METADATA/PeptideEvidence.cpp:118
↓ 17 callersMethodsetCompletionTime
src/openms/source/METADATA/DataProcessing.cpp:83
↓ 17 callersMethodsetFixedModification
src/openms/source/CHEMISTRY/ModificationDefinition.cpp:72
↓ 17 callersMethodsetIonOptics
src/openms/source/METADATA/Instrument.cpp:151
↓ 17 callersMethodsetLoadedFilePath
src/openms/source/METADATA/DocumentIdentifier.cpp:38
↓ 17 callersMethodsetLogDestination
src/openms/source/CONCEPT/FuzzyStringComparator.cpp:145
↓ 17 callersMethodsetMZRange
src/openms/source/FORMAT/OPTIONS/PeakFileOptions.cpp:104
↓ 17 callersMethodsetMonoMass
src/openms/source/CHEMISTRY/Ribonucleotide.cpp:83
↓ 17 callersMethodsetRTRange
src/openms/source/FORMAT/OPTIONS/PeakFileOptions.cpp:88
↓ 17 callersMethodstart
src/openms_gui/source/VISUAL/TOPPASScene.cpp:41
↓ 16 callersFunctionProteinHit
Copy constructor
src/openms/include/OpenMS/METADATA/ProteinHit.h:112
↓ 16 callersMethodaddModification
src/openms/source/CHEMISTRY/ModificationsDB.cpp:490
↓ 16 callersMethodaddNewState
src/openms/source/ANALYSIS/ID/HiddenMarkovModel.cpp:306
↓ 16 callersMethodcopy
Like dict.copy() but returns a Counter instance instead of a dict.
src/pyOpenMS/tests/unittests/collections_.py:100
↓ 16 callersMethodempty
Returns \c true if getData() is empty.
src/openms/include/OpenMS/MATH/MISC/LinearInterpolation.h:310
↓ 16 callersFunctionfilterSpectrum
src/openms/include/OpenMS/FILTERING/TRANSFORMERS/Scaler.h:48
↓ 16 callersMethodfindNode
src/openms/source/DATASTRUCTURES/Param.cpp:233
↓ 16 callersMethodgetGravityAxis
Which axis is affected by gravity?
src/openms_gui/include/OpenMS/VISUAL/Plot1DCanvas.h:99
↓ 16 callersMethodgetMZidx
src/openms/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteredPeak.cpp:38
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