MCPcopy Create free account

hub / github.com/OpenMS/OpenMS / functions

Functions12,842 in github.com/OpenMS/OpenMS

↓ 16 callersMethodgetNumberOfLabels
@return the number of labels per file
src/openms/source/METADATA/ExperimentalDesign.cpp:543
↓ 16 callersMethodgetNumberOfMSFiles
@return the number of MS files (= fractions * fraction_groups)
src/openms/source/METADATA/ExperimentalDesign.cpp:554
↓ 16 callersMethodgetNumberOfMaxAA
src/openms/source/CHEMISTRY/MASSDECOMPOSITION/MassDecomposition.cpp:203
↓ 16 callersMethodgetParam
src/openms/source/FORMAT/HANDLERS/AcqusHandler.cpp:94
↓ 16 callersMethodgetParam
src/tests/class_tests/openms/source/TOPPBase_test.cpp:369
↓ 16 callersMethodhandlePTMs
src/openms/source/FORMAT/InspectInfile.cpp:173
↓ 16 callersMethodhas
src/openms/source/DATASTRUCTURES/String.cpp:179
↓ 16 callersMethodisRunnable
function tests if a metric has the required input files gives a warning with the name of the metric that can not be performed
src/openms/source/QC/QCBase.cpp:61
↓ 16 callersMethodisSelected
src/openms_gui/source/VISUAL/ANNOTATION/Annotation1DItem.cpp:52
↓ 16 callersMethodmerge
src/openms/source/FORMAT/QcMLFile.cpp:529
↓ 16 callersFunctionrealOutput
($text, $user, $filename)
tools/checker.php:67
↓ 16 callersFunctionrecalculateRanges_
@brief Recalculates the overall_data_range_ (by calling PlotCanvas::recalculateRanges_) plus the overall_data_range_1d_ (which only tak
src/openms_gui/include/OpenMS/VISUAL/Plot1DCanvas.h:630
↓ 16 callersMethodremoveAll
src/openms/source/DATASTRUCTURES/Param.cpp:670
↓ 16 callersMethodsetCoverage
sets the coverage (in percent) of the protein hit based upon matched peptides
src/openms/source/METADATA/ProteinHit.cpp:143
↓ 16 callersMethodsetData
src/openms/include/OpenMS/MATH/MISC/BilinearInterpolation.h:501
↓ 16 callersMethodsetFirstName
src/openms/source/METADATA/ContactPerson.cpp:38
↓ 16 callersMethodsetFullId
src/openms/source/CHEMISTRY/ResidueModification.cpp:126
↓ 16 callersMethodsetFullName
src/openms/source/CHEMISTRY/ResidueModification.cpp:186
↓ 16 callersMethodsetPassed
(self, passed)
tools/PythonExtensionChecker.py:821
↓ 16 callersMethodsetResolution
src/openms/source/METADATA/IonDetector.cpp:73
↓ 16 callersMethodsetSourceClassification
src/openms/source/CHEMISTRY/ResidueModification.cpp:293
↓ 16 callersMethodsetTransitions
src/openms/source/ANALYSIS/TARGETED/TargetedExperiment.cpp:501
↓ 16 callersMethodsetValueQuick
@brief sets a value at a given position: @param i the i-th row @param j the j-th col @param value the set-value @throw Except
src/openms/include/OpenMS/DATASTRUCTURES/DistanceMatrix.h:283
↓ 16 callersMethodshufflePeptide
src/openms/source/ANALYSIS/OPENSWATH/MRMDecoy.cpp:102
↓ 16 callersMethodspatiallyLessEqual
Spatially (geometrically) less or equal operator. All coordinates must be "<=".
src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:217
↓ 16 callersFunctionsplit
src/openms/include/OpenMS/DATASTRUCTURES/StringUtilsSimple.h:340
↓ 16 callersMethodunWeightDatum
src/openms/source/ANALYSIS/MAPMATCHING/TransformationModel.cpp:209
↓ 15 callersMethodMBBegin
src/openms/source/KERNEL/Mobilogram.cpp:214
↓ 15 callersMethodMBEnd
src/openms/source/KERNEL/Mobilogram.cpp:228
↓ 15 callersMethodNumLines
Returns the number of lines represented.
src/tests/coding/cpplint.py:1924
↓ 15 callersMethodParam
src/openms/source/DATASTRUCTURES/Param.cpp:424
↓ 15 callersFunctionRangeBase
Custom C'tor to set min and max @throws Exception::InvalidRange if min > max
src/openms/include/OpenMS/KERNEL/RangeManager.h:45
↓ 15 callersFunctionSTART_SECTION
src/tests/class_tests/openms/source/ChromatogramPeak_test.cpp:26
↓ 15 callersMethodTargetedExperiment
src/openms/source/ANALYSIS/TARGETED/TargetedExperiment.cpp:49
↓ 15 callersMethodaddCluster
src/openms/source/COMPARISON/CLUSTERING/ClusteringGrid.cpp:33
↓ 15 callersMethodbegin
See std::vector documentation.
src/openms/include/OpenMS/DATASTRUCTURES/ConstRefVector.h:371
↓ 15 callersFunctioncbegin
src/openms/include/OpenMS/KERNEL/Mobilogram.h:140
↓ 15 callersMethodclearMSLevels
src/openms/source/FORMAT/OPTIONS/PeakFileOptions.cpp:146
↓ 15 callersMethodcreateTables
src/openms/source/FORMAT/HANDLERS/MzMLSqliteHandler.cpp:857
↓ 15 callersMethodflush
src/openms/source/CONCEPT/LogStream.cpp:542
↓ 15 callersMethodgetAverageMass
src/openms/source/CHEMISTRY/ResidueModification.cpp:439
↓ 15 callersMethodgetConcentrationUnits
src/openms/source/ANALYSIS/QUANTITATION/AbsoluteQuantitationMethod.cpp:127
↓ 15 callersMethodgetElements
src/openms/source/DATASTRUCTURES/QTCluster.cpp:151
↓ 15 callersMethodgetISName
src/openms/source/ANALYSIS/QUANTITATION/AbsoluteQuantitationMethod.cpp:107
↓ 15 callersMethodgetIntOption_
src/openms/source/APPLICATIONS/TOPPBase.cpp:1307
↓ 15 callersMethodgetNavigator
src/openms/source/FILTERING/DATAREDUCTION/SplineInterpolatedPeaks.cpp:170
↓ 15 callersMethodgetPeak
src/openms/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteredMSExperiment.cpp:35
↓ 15 callersMethodgetResolutionMethod
src/openms/source/METADATA/MassAnalyzer.cpp:86
↓ 15 callersMethodgetRightEndpoint
src/openms/source/TRANSFORMATIONS/RAW2PEAK/PeakShape.cpp:248
↓ 15 callersMethodgetSlope
src/openms/source/MATH/STATISTICS/LinearRegression.cpp:43
↓ 15 callersMethodgetSubsequence
src/openms/source/CHEMISTRY/AASequence.cpp:727
↓ 15 callersMethodgetZoomScan
src/openms/source/METADATA/InstrumentSettings.cpp:79
↓ 15 callersMethodhasEnzyme
@name Predicates */ @{ returns true if the db contains a enzyme with the given name (supports synonym names)
src/openms/include/OpenMS/CHEMISTRY/DigestionEnzymeDB.h:110
↓ 15 callersMethodhasNeutralLoss
src/openms/source/CHEMISTRY/Residue.cpp:591
↓ 15 callersMethodisDetectingTransition
src/openms/source/ANALYSIS/MRM/ReactionMonitoringTransition.cpp:359
↓ 15 callersMethodisEmpty
Test if bounding box is empty
src/openms/include/OpenMS/DATASTRUCTURES/DBoundingBox.h:166
↓ 15 callersMethodparseCommandLine
src/openms/source/DATASTRUCTURES/Param.cpp:822
↓ 15 callersFunctionpick
@brief Picks peaks in one spectrum. */
src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerSH.h:34
↓ 15 callersMethodregisterName
src/openms/source/METADATA/MetaInfoRegistry.cpp:115
↓ 15 callersMethodregisterProcessingStep
src/openms/source/METADATA/ID/IdentificationData.cpp:253
↓ 15 callersMethodreset
src/openms/source/SYSTEM/SysInfo.cpp:173
↓ 15 callersMethodsetCutOff
set cutoff value
src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:103
↓ 15 callersMethodsetExperimentType
src/openms/source/KERNEL/ConsensusMap.cpp:292
↓ 15 callersMethodsetIntensityRange
src/openms/source/FORMAT/OPTIONS/PeakFileOptions.cpp:120
↓ 15 callersMethodsetProcessingActions
src/openms/source/METADATA/DataProcessing.cpp:98
↓ 15 callersMethodsetScale
src/openms/source/COMPARISON/CLUSTERING/EuclideanSimilarity.cpp:48
↓ 15 callersMethodtoString
Convert DataValues to String
src/openms/source/DATASTRUCTURES/DataValue.cpp:721
↓ 15 callersMethodtranslate
src/openms/source/METADATA/ID/IdentificationData.cpp:1359
↓ 14 callersFunctionFineIsotopePatternGenerator
* @brief Constructor * * @param stop_condition The total probability (if use_total_prob == true) or * threshold (if use_total
src/openms/include/OpenMS/CHEMISTRY/ISOTOPEDISTRIBUTION/FineIsotopePatternGenerator.h:122
↓ 14 callersFunctionSTART_SECTION
src/tests/class_tests/openms/source/DPosition_test.cpp:42
↓ 14 callersFunctionSourceFile
Copy constructor
src/openms/include/OpenMS/METADATA/SourceFile.h:39
↓ 14 callersMethodabsolutePath
src/openms/source/SYSTEM/File.cpp:323
↓ 14 callersMethodactivateCache
@brief Swaps in the background cache of entries, read previously via @p cacheChunk() If you call this function without a prior call to @p
src/openms/include/OpenMS/DATASTRUCTURES/FASTAContainer.h:96
↓ 14 callersMethodaddLossFormula
src/openms/source/CHEMISTRY/Residue.cpp:240
↓ 14 callersMethodaddMetaValues
TODO get a MetaValue list to copy only those that have been set
src/openms/source/METADATA/MetaInfoInterface.cpp:251
↓ 14 callersMethodaddTreatment
src/openms/source/METADATA/Sample.cpp:220
↓ 14 callersMethodboundingRect
src/openms_gui/source/VISUAL/TOPPASEdge.cpp:104
↓ 14 callersMethoddecodeIntegers
src/openms/include/OpenMS/FORMAT/Base64.h:422
↓ 14 callersMethodencodeNP
src/openms/source/FORMAT/MSNumpressCoder.cpp:24
↓ 14 callersFunctionendianize64
Endianizes a 64 bit type from big endian to little endian and vice versa
src/openms/include/OpenMS/FORMAT/Base64.h:185
↓ 14 callersMethodexportFeatureMap
src/openms/source/QC/MQMsmsExporter.cpp:256
↓ 14 callersMethodformattedValue
src/openms/source/KERNEL/DimMapper.cpp:29
↓ 14 callersMethodgetFactorValue
src/openms/source/METADATA/ExperimentalDesign.cpp:799
↓ 14 callersMethodgetFunction
src/openms/source/CONCEPT/Exception.cpp:86
↓ 14 callersMethodgetIntercept
src/openms/source/MATH/STATISTICS/LinearRegression.cpp:38
↓ 14 callersMethodgetIsRepeatable
src/openms/source/DATASTRUCTURES/CVMappingTerm.cpp:104
↓ 14 callersMethodgetLLOD
src/openms/source/ANALYSIS/QUANTITATION/AbsoluteQuantitationMethod.cpp:62
↓ 14 callersMethodgetLeftEndpoint
src/openms/source/TRANSFORMATIONS/RAW2PEAK/PeakShape.cpp:237
↓ 14 callersMethodgetMagneticFieldStrength
src/openms/source/METADATA/MassAnalyzer.cpp:206
↓ 14 callersMethodgetPercentage
src/openms/source/METADATA/Gradient.cpp:136
↓ 14 callersMethodgetPrecursorIM
src/openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/TransitionExperiment.h:83
↓ 14 callersMethodgetReflectronState
src/openms/source/METADATA/MassAnalyzer.cpp:126
↓ 14 callersMethodgetRowUpperBound
src/openms/source/DATASTRUCTURES/LPWrapper.cpp:704
↓ 14 callersMethodgetTransitionProbability
src/openms/source/ANALYSIS/ID/HiddenMarkovModel.cpp:396
↓ 14 callersMethodgetULOD
src/openms/source/ANALYSIS/QUANTITATION/AbsoluteQuantitationMethod.cpp:67
↓ 14 callersFunctioninitialNewline
src/openms/source/CONCEPT/ClassTest.cpp:215
↓ 14 callersMethodplaceItem
src/openms_gui/source/VISUAL/MISC/GUIHelpers.cpp:300
↓ 14 callersMethodprepareStatement
src/openms/source/FORMAT/SqliteConnector.cpp:121
↓ 14 callersMethodregisterInputFile
src/openms/source/METADATA/ID/IdentificationData.cpp:203
↓ 14 callersMethodregisterObservationMatch
src/openms/source/METADATA/ID/IdentificationData.cpp:491
← previousnext →801–900 of 12,842, ranked by callers