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Functions
12,842 in github.com/OpenMS/OpenMS
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Functions
12,842
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Types & classes
2,562
↓ 16 callers
Method
getNumberOfLabels
@return the number of labels per file
src/openms/source/METADATA/ExperimentalDesign.cpp:543
↓ 16 callers
Method
getNumberOfMSFiles
@return the number of MS files (= fractions * fraction_groups)
src/openms/source/METADATA/ExperimentalDesign.cpp:554
↓ 16 callers
Method
getNumberOfMaxAA
src/openms/source/CHEMISTRY/MASSDECOMPOSITION/MassDecomposition.cpp:203
↓ 16 callers
Method
getParam
src/openms/source/FORMAT/HANDLERS/AcqusHandler.cpp:94
↓ 16 callers
Method
getParam
src/tests/class_tests/openms/source/TOPPBase_test.cpp:369
↓ 16 callers
Method
handlePTMs
src/openms/source/FORMAT/InspectInfile.cpp:173
↓ 16 callers
Method
has
src/openms/source/DATASTRUCTURES/String.cpp:179
↓ 16 callers
Method
isRunnable
function tests if a metric has the required input files gives a warning with the name of the metric that can not be performed
src/openms/source/QC/QCBase.cpp:61
↓ 16 callers
Method
isSelected
src/openms_gui/source/VISUAL/ANNOTATION/Annotation1DItem.cpp:52
↓ 16 callers
Method
merge
src/openms/source/FORMAT/QcMLFile.cpp:529
↓ 16 callers
Function
realOutput
($text, $user, $filename)
tools/checker.php:67
↓ 16 callers
Function
recalculateRanges_
@brief Recalculates the overall_data_range_ (by calling PlotCanvas::recalculateRanges_) plus the overall_data_range_1d_ (which only tak
src/openms_gui/include/OpenMS/VISUAL/Plot1DCanvas.h:630
↓ 16 callers
Method
removeAll
src/openms/source/DATASTRUCTURES/Param.cpp:670
↓ 16 callers
Method
setCoverage
sets the coverage (in percent) of the protein hit based upon matched peptides
src/openms/source/METADATA/ProteinHit.cpp:143
↓ 16 callers
Method
setData
src/openms/include/OpenMS/MATH/MISC/BilinearInterpolation.h:501
↓ 16 callers
Method
setFirstName
src/openms/source/METADATA/ContactPerson.cpp:38
↓ 16 callers
Method
setFullId
src/openms/source/CHEMISTRY/ResidueModification.cpp:126
↓ 16 callers
Method
setFullName
src/openms/source/CHEMISTRY/ResidueModification.cpp:186
↓ 16 callers
Method
setPassed
(self, passed)
tools/PythonExtensionChecker.py:821
↓ 16 callers
Method
setResolution
src/openms/source/METADATA/IonDetector.cpp:73
↓ 16 callers
Method
setSourceClassification
src/openms/source/CHEMISTRY/ResidueModification.cpp:293
↓ 16 callers
Method
setTransitions
src/openms/source/ANALYSIS/TARGETED/TargetedExperiment.cpp:501
↓ 16 callers
Method
setValueQuick
@brief sets a value at a given position: @param i the i-th row @param j the j-th col @param value the set-value @throw Except
src/openms/include/OpenMS/DATASTRUCTURES/DistanceMatrix.h:283
↓ 16 callers
Method
shufflePeptide
src/openms/source/ANALYSIS/OPENSWATH/MRMDecoy.cpp:102
↓ 16 callers
Method
spatiallyLessEqual
Spatially (geometrically) less or equal operator. All coordinates must be "<=".
src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:217
↓ 16 callers
Function
split
src/openms/include/OpenMS/DATASTRUCTURES/StringUtilsSimple.h:340
↓ 16 callers
Method
unWeightDatum
src/openms/source/ANALYSIS/MAPMATCHING/TransformationModel.cpp:209
↓ 15 callers
Method
MBBegin
src/openms/source/KERNEL/Mobilogram.cpp:214
↓ 15 callers
Method
MBEnd
src/openms/source/KERNEL/Mobilogram.cpp:228
↓ 15 callers
Method
NumLines
Returns the number of lines represented.
src/tests/coding/cpplint.py:1924
↓ 15 callers
Method
Param
src/openms/source/DATASTRUCTURES/Param.cpp:424
↓ 15 callers
Function
RangeBase
Custom C'tor to set min and max @throws Exception::InvalidRange if min > max
src/openms/include/OpenMS/KERNEL/RangeManager.h:45
↓ 15 callers
Function
START_SECTION
src/tests/class_tests/openms/source/ChromatogramPeak_test.cpp:26
↓ 15 callers
Method
TargetedExperiment
src/openms/source/ANALYSIS/TARGETED/TargetedExperiment.cpp:49
↓ 15 callers
Method
addCluster
src/openms/source/COMPARISON/CLUSTERING/ClusteringGrid.cpp:33
↓ 15 callers
Method
begin
See std::vector documentation.
src/openms/include/OpenMS/DATASTRUCTURES/ConstRefVector.h:371
↓ 15 callers
Function
cbegin
src/openms/include/OpenMS/KERNEL/Mobilogram.h:140
↓ 15 callers
Method
clearMSLevels
src/openms/source/FORMAT/OPTIONS/PeakFileOptions.cpp:146
↓ 15 callers
Method
createTables
src/openms/source/FORMAT/HANDLERS/MzMLSqliteHandler.cpp:857
↓ 15 callers
Method
flush
src/openms/source/CONCEPT/LogStream.cpp:542
↓ 15 callers
Method
getAverageMass
src/openms/source/CHEMISTRY/ResidueModification.cpp:439
↓ 15 callers
Method
getConcentrationUnits
src/openms/source/ANALYSIS/QUANTITATION/AbsoluteQuantitationMethod.cpp:127
↓ 15 callers
Method
getElements
src/openms/source/DATASTRUCTURES/QTCluster.cpp:151
↓ 15 callers
Method
getISName
src/openms/source/ANALYSIS/QUANTITATION/AbsoluteQuantitationMethod.cpp:107
↓ 15 callers
Method
getIntOption_
src/openms/source/APPLICATIONS/TOPPBase.cpp:1307
↓ 15 callers
Method
getNavigator
src/openms/source/FILTERING/DATAREDUCTION/SplineInterpolatedPeaks.cpp:170
↓ 15 callers
Method
getPeak
src/openms/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteredMSExperiment.cpp:35
↓ 15 callers
Method
getResolutionMethod
src/openms/source/METADATA/MassAnalyzer.cpp:86
↓ 15 callers
Method
getRightEndpoint
src/openms/source/TRANSFORMATIONS/RAW2PEAK/PeakShape.cpp:248
↓ 15 callers
Method
getSlope
src/openms/source/MATH/STATISTICS/LinearRegression.cpp:43
↓ 15 callers
Method
getSubsequence
src/openms/source/CHEMISTRY/AASequence.cpp:727
↓ 15 callers
Method
getZoomScan
src/openms/source/METADATA/InstrumentSettings.cpp:79
↓ 15 callers
Method
hasEnzyme
@name Predicates */ @{ returns true if the db contains a enzyme with the given name (supports synonym names)
src/openms/include/OpenMS/CHEMISTRY/DigestionEnzymeDB.h:110
↓ 15 callers
Method
hasNeutralLoss
src/openms/source/CHEMISTRY/Residue.cpp:591
↓ 15 callers
Method
isDetectingTransition
src/openms/source/ANALYSIS/MRM/ReactionMonitoringTransition.cpp:359
↓ 15 callers
Method
isEmpty
Test if bounding box is empty
src/openms/include/OpenMS/DATASTRUCTURES/DBoundingBox.h:166
↓ 15 callers
Method
parseCommandLine
src/openms/source/DATASTRUCTURES/Param.cpp:822
↓ 15 callers
Function
pick
@brief Picks peaks in one spectrum. */
src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerSH.h:34
↓ 15 callers
Method
registerName
src/openms/source/METADATA/MetaInfoRegistry.cpp:115
↓ 15 callers
Method
registerProcessingStep
src/openms/source/METADATA/ID/IdentificationData.cpp:253
↓ 15 callers
Method
reset
src/openms/source/SYSTEM/SysInfo.cpp:173
↓ 15 callers
Method
setCutOff
set cutoff value
src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:103
↓ 15 callers
Method
setExperimentType
src/openms/source/KERNEL/ConsensusMap.cpp:292
↓ 15 callers
Method
setIntensityRange
src/openms/source/FORMAT/OPTIONS/PeakFileOptions.cpp:120
↓ 15 callers
Method
setProcessingActions
src/openms/source/METADATA/DataProcessing.cpp:98
↓ 15 callers
Method
setScale
src/openms/source/COMPARISON/CLUSTERING/EuclideanSimilarity.cpp:48
↓ 15 callers
Method
toString
Convert DataValues to String
src/openms/source/DATASTRUCTURES/DataValue.cpp:721
↓ 15 callers
Method
translate
src/openms/source/METADATA/ID/IdentificationData.cpp:1359
↓ 14 callers
Function
FineIsotopePatternGenerator
* @brief Constructor * * @param stop_condition The total probability (if use_total_prob == true) or * threshold (if use_total
src/openms/include/OpenMS/CHEMISTRY/ISOTOPEDISTRIBUTION/FineIsotopePatternGenerator.h:122
↓ 14 callers
Function
START_SECTION
src/tests/class_tests/openms/source/DPosition_test.cpp:42
↓ 14 callers
Function
SourceFile
Copy constructor
src/openms/include/OpenMS/METADATA/SourceFile.h:39
↓ 14 callers
Method
absolutePath
src/openms/source/SYSTEM/File.cpp:323
↓ 14 callers
Method
activateCache
@brief Swaps in the background cache of entries, read previously via @p cacheChunk() If you call this function without a prior call to @p
src/openms/include/OpenMS/DATASTRUCTURES/FASTAContainer.h:96
↓ 14 callers
Method
addLossFormula
src/openms/source/CHEMISTRY/Residue.cpp:240
↓ 14 callers
Method
addMetaValues
TODO get a MetaValue list to copy only those that have been set
src/openms/source/METADATA/MetaInfoInterface.cpp:251
↓ 14 callers
Method
addTreatment
src/openms/source/METADATA/Sample.cpp:220
↓ 14 callers
Method
boundingRect
src/openms_gui/source/VISUAL/TOPPASEdge.cpp:104
↓ 14 callers
Method
decodeIntegers
src/openms/include/OpenMS/FORMAT/Base64.h:422
↓ 14 callers
Method
encodeNP
src/openms/source/FORMAT/MSNumpressCoder.cpp:24
↓ 14 callers
Function
endianize64
Endianizes a 64 bit type from big endian to little endian and vice versa
src/openms/include/OpenMS/FORMAT/Base64.h:185
↓ 14 callers
Method
exportFeatureMap
src/openms/source/QC/MQMsmsExporter.cpp:256
↓ 14 callers
Method
formattedValue
src/openms/source/KERNEL/DimMapper.cpp:29
↓ 14 callers
Method
getFactorValue
src/openms/source/METADATA/ExperimentalDesign.cpp:799
↓ 14 callers
Method
getFunction
src/openms/source/CONCEPT/Exception.cpp:86
↓ 14 callers
Method
getIntercept
src/openms/source/MATH/STATISTICS/LinearRegression.cpp:38
↓ 14 callers
Method
getIsRepeatable
src/openms/source/DATASTRUCTURES/CVMappingTerm.cpp:104
↓ 14 callers
Method
getLLOD
src/openms/source/ANALYSIS/QUANTITATION/AbsoluteQuantitationMethod.cpp:62
↓ 14 callers
Method
getLeftEndpoint
src/openms/source/TRANSFORMATIONS/RAW2PEAK/PeakShape.cpp:237
↓ 14 callers
Method
getMagneticFieldStrength
src/openms/source/METADATA/MassAnalyzer.cpp:206
↓ 14 callers
Method
getPercentage
src/openms/source/METADATA/Gradient.cpp:136
↓ 14 callers
Method
getPrecursorIM
src/openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/TransitionExperiment.h:83
↓ 14 callers
Method
getReflectronState
src/openms/source/METADATA/MassAnalyzer.cpp:126
↓ 14 callers
Method
getRowUpperBound
src/openms/source/DATASTRUCTURES/LPWrapper.cpp:704
↓ 14 callers
Method
getTransitionProbability
src/openms/source/ANALYSIS/ID/HiddenMarkovModel.cpp:396
↓ 14 callers
Method
getULOD
src/openms/source/ANALYSIS/QUANTITATION/AbsoluteQuantitationMethod.cpp:67
↓ 14 callers
Function
initialNewline
src/openms/source/CONCEPT/ClassTest.cpp:215
↓ 14 callers
Method
placeItem
src/openms_gui/source/VISUAL/MISC/GUIHelpers.cpp:300
↓ 14 callers
Method
prepareStatement
src/openms/source/FORMAT/SqliteConnector.cpp:121
↓ 14 callers
Method
registerInputFile
src/openms/source/METADATA/ID/IdentificationData.cpp:203
↓ 14 callers
Method
registerObservationMatch
src/openms/source/METADATA/ID/IdentificationData.cpp:491
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