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Functions12,842 in github.com/OpenMS/OpenMS

⨍ Functions 12,842◇ Types & classes 2,562

↓ 14 callersMethodsetCoefficients

src/openms/source/FILTERING/CALIBRATION/MZTrafoModel.cpp:351

↓ 14 callersMethodsetPrecursor

src/openms/source/METADATA/ChromatogramSettings.cpp:129

↓ 14 callersFunctionsetRange

src/openms/include/OpenMS/KERNEL/DimMapper.h:235

↓ 14 callersMethodsetScanTime

src/openms/source/METADATA/MassAnalyzer.cpp:171

↓ 14 callersMethodsetZoomScan

src/openms/source/METADATA/InstrumentSettings.cpp:84

↓ 14 callersMethodsize

src/openms/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmPickedHelperStructs.cpp:23

↓ 14 callersFunctionskipNonWhitespace

@brief return the number of non-whitespace characters (anything but \n, \t, \r, ' ') in the prefix of @p data */

src/openms/include/OpenMS/DATASTRUCTURES/StringUtilsSimple.h:614

↓ 14 callersMethodsort

src/openms/source/ANALYSIS/TOPDOWN/PeakGroup.cpp:1073

↓ 14 callersFunctionwriteMetaValuesHeader

src/topp/TextExporter.cpp:243

↓ 13 callersFunctionCloseExpression

If input points to ( or { or [ or <, finds the position that closes it. If lines[linenum][pos] points to a '(' or '{' or '[' or '<', finds the li

src/tests/coding/cpplint.py:2074

↓ 13 callersFunctionEND_SECTION START_SECTION

src/tests/class_tests/openms/source/Residue_test.cpp:382

↓ 13 callersMethodFeatureXMLFile

src/openms/source/FORMAT/FeatureXMLFile.cpp:25

↓ 13 callersFunctionProduct

Copy constructor

src/openms/include/OpenMS/METADATA/Product.h:31

↓ 13 callersMethodaddLossName

src/openms/source/CHEMISTRY/Residue.cpp:250

↓ 13 callersMethodaddNeedlesAndCompress

src/openms/source/ANALYSIS/ID/AhoCorasickAmbiguous.cpp:85

↓ 13 callersMethodaddProtein

src/openms/source/DATASTRUCTURES/OSWData.cpp:18

↓ 13 callersMethodaddReferenceFormat

src/openms/source/METADATA/SpectrumLookup.cpp:107

↓ 13 callersMethodcalculateTIC

src/openms/source/KERNEL/Mobilogram.cpp:341

↓ 13 callersMethodcenter

Returns the center of the interval

src/openms/include/OpenMS/DATASTRUCTURES/DIntervalBase.h:243

↓ 13 callersFunctioncheckIteratorsNotNULL

src/openms/include/OpenMS/MATH/STATISTICS/StatisticFunctions.h:33

↓ 13 callersMethodclearMetaInfo

src/openms/source/METADATA/MetaInfoInterface.cpp:228

↓ 13 callersMethodcontainsAll

src/openms/include/OpenMS/KERNEL/RangeManager.h:775

↓ 13 callersMethodcorrectMZ

src/openms/source/ANALYSIS/OPENSWATH/SwathMapMassCorrection.cpp:352

↓ 13 callersFunctionfill_mock_objects

src/tests/class_tests/openms/source/MRMScoring_test.cpp:42

↓ 13 callersMethodgetA

src/openms/source/MATH/STATISTICS/QuadraticRegression.cpp:46

↓ 13 callersMethodgetADCSamplingFrequency

src/openms/source/METADATA/IonDetector.cpp:78

↓ 13 callersMethodgetAccuracy

src/openms/source/METADATA/MassAnalyzer.cpp:146

↓ 13 callersMethodgetB

src/openms/source/MATH/STATISTICS/QuadraticRegression.cpp:47

↓ 13 callersMethodgetC

src/openms/source/MATH/STATISTICS/QuadraticRegression.cpp:48

↓ 13 callersMethodgetCompression

src/openms/source/FORMAT/OPTIONS/PeakFileOptions.cpp:171

↓ 13 callersMethodgetFWHM

src/openms/source/TRANSFORMATIONS/RAW2PEAK/PeakShape.cpp:178

↓ 13 callersMethodgetID

src/openms/source/DATASTRUCTURES/GridFeature.cpp:55

↓ 13 callersMethodgetIonSeries

src/openms/source/ANALYSIS/OPENSWATH/MRMIonSeries.cpp:447

↓ 13 callersMethodgetMZShiftAt

src/openms/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexIsotopicPeakPattern.cpp:64

↓ 13 callersMethodgetMissedCleavages

src/openms/source/FORMAT/MascotInfile.cpp:445

↓ 13 callersMethodgetMonoWeight

src/openms/source/CHEMISTRY/AASequence.cpp:496

↓ 13 callersFunctiongetNrSpectra

Returns the number of spectra available

src/openms/source/INTERFACES_IMPL/MockImplementation.cpp:39

↓ 13 callersMethodgetNumberOfChannels

src/openms/source/ANALYSIS/QUANTITATION/TMTSixPlexQuantitationMethod.cpp:97

↓ 13 callersMethodgetNumberOfModifications

src/openms/source/CHEMISTRY/ModificationsDB.cpp:107

↓ 13 callersMethodgetOffset

src/openms/source/TRANSFORMATIONS/FEATUREFINDER/IsotopeModel.cpp:229

↓ 13 callersFunctiongetPPMAbs

src/openms/include/OpenMS/MATH/MISC/MathFunctions.h:294

↓ 13 callersMethodgetParam_

src/openms_gui/source/VISUAL/DIALOGS/TheoreticalSpectrumGenerationDialog.cpp:114

↓ 13 callersMethodgetRegisteredMod

src/openms/source/FORMAT/PepXMLFile.cpp:97

↓ 13 callersMethodgetSourceOutParam

src/openms_gui/source/VISUAL/TOPPASEdge.cpp:589

↓ 13 callersMethodgetStringOption

src/tests/class_tests/openms/source/TOPPBase_test.cpp:83

↓ 13 callersMethodgetTOFTotalPathLength

src/openms/source/METADATA/MassAnalyzer.cpp:176

↓ 13 callersMethodgetTemperature

src/openms/source/METADATA/HPLC.cpp:67

↓ 13 callersMethodgetTermSpecificityName

src/openms/source/CHEMISTRY/ResidueModification.cpp:248

↓ 13 callersMethodgetUserTime

getUserTime reports the current amount of user cpu time accumulated by this StopWatch. If the stop_watch is currently off, this is just the accumulat

src/openms/source/SYSTEM/StopWatch.cpp:159

↓ 13 callersFunctionintegrateWindow

src/openms/source/ANALYSIS/OPENSWATH/DIAHelper.cpp:120

↓ 13 callersMethodisActive

src/openms/source/ANALYSIS/OPENSWATH/OpenSwathTSVWriter.cpp:27

↓ 13 callersMethodisOpen

src/openms/include/OpenMS/FORMAT/GzipIfstream.h:111

↓ 13 callersFunctionmakePeakPositionUnique

src/openms/include/OpenMS/KERNEL/SpectrumHelper.h:147

↓ 13 callersFunctionnormalize

src/openswathalgo/source/OPENSWATHALGO/ALGO/StatsHelpers.cpp:18

↓ 13 callersMethodpushInto

* \brief Push the area into a sandbox (if its outside the sandbox). See UnitRange::pushInto() * \param sandbox The sandbox which delimits the ran

src/openms/include/OpenMS/KERNEL/DimMapper.h:898

↓ 13 callersFunctionrankedMutualInformation

src/openswathalgo/source/OPENSWATHALGO/ALGO/Scoring.cpp:284

↓ 13 callersMethodrdbuf

src/openms/source/CONCEPT/LogStream.cpp:81

↓ 13 callersMethodreadQuantData

src/openms/source/ANALYSIS/QUANTITATION/PeptideAndProteinQuant.cpp:615

↓ 13 callersMethodregisterIdentifiedPeptide

src/openms/source/METADATA/ID/IdentificationData.cpp:362

↓ 13 callersMethodregisterParentSequence

src/openms/source/METADATA/ID/IdentificationData.cpp:417

↓ 13 callersMethodrequirements

Returns required file input i.e. MzML. This is encoded as a bit in a Status object.

src/openms/source/QC/TIC.cpp:76

↓ 13 callersFunctionreset

Give up hold on data

src/openms/include/OpenMS/FORMAT/HANDLERS/XMLHandler.h:76

↓ 13 callersMethodsetComponentName

src/openms/source/ANALYSIS/QUANTITATION/AbsoluteQuantitationMethod.cpp:112

↓ 13 callersMethodsetConcentrationUnits

src/openms/source/ANALYSIS/QUANTITATION/AbsoluteQuantitationMethod.cpp:122

↓ 13 callersMethodsetDimMinMax

only set interval for a single dimension

src/openms/include/OpenMS/DATASTRUCTURES/DIntervalBase.h:228

↓ 13 callersMethodsetFeatureName

src/openms/source/ANALYSIS/QUANTITATION/AbsoluteQuantitationMethod.cpp:92

↓ 13 callersMethodsetFlux

src/openms/source/METADATA/HPLC.cpp:92

↓ 13 callersMethodsetFormula

src/openms/source/CHEMISTRY/Residue.cpp:295

↓ 13 callersMethodsetISName

src/openms/source/ANALYSIS/QUANTITATION/AbsoluteQuantitationMethod.cpp:102

↓ 13 callersMethodsetMetaValue

src/openms/source/METADATA/ID/IdentificationData.cpp:1310

↓ 13 callersMethodsetState

src/openms/source/METADATA/Sample.cpp:170

↓ 13 callersMethodsetTemperature

src/openms/source/METADATA/HPLC.cpp:72

↓ 13 callersMethodsetTransitionProbability

src/openms/source/ANALYSIS/ID/HiddenMarkovModel.cpp:380

↓ 13 callersMethodsize

src/openms/source/CHEMISTRY/NASequence.cpp:277

↓ 13 callersMethodstore

src/openms/source/ANALYSIS/ID/SiriusMSConverter.cpp:406

↓ 13 callersMethodstoreExperiment

src/openms/source/FORMAT/FileHandler.cpp:814

↓ 13 callersMethodstreamEnd

src/openms/include/OpenMS/FORMAT/GzipIfstream.h:116

↓ 13 callersMethodtrimRight

src/openms/source/CHEMISTRY/ISOTOPEDISTRIBUTION/IsotopeDistribution.cpp:194

↓ 13 callersMethodunited

Returns the smallest range containing this range and @p other_range

src/openms/include/OpenMS/DATASTRUCTURES/DRange.h:175

↓ 13 callersFunctionzoomIn

* \brief Zoom into an interval [left, right], decreasing its width by @p factor (which must be in [0,inf]). * * To actually zoom in, the @p

src/openms/include/OpenMS/MATH/MISC/MathFunctions.h:87

↓ 12 callersFunctionAcquisitionInfo

Copy constructor

src/openms/include/OpenMS/METADATA/AcquisitionInfo.h:37

↓ 12 callersMethodConsensusMap

src/openms/source/KERNEL/ConsensusMap.cpp:25

↓ 12 callersFunctionPrecursor

Copy constructor

src/openms/include/OpenMS/METADATA/Precursor.h:41

↓ 12 callersFunctionSTART_SECTION

src/tests/class_tests/openms/source/Matrix_test.cpp:154

↓ 12 callersFunctionSearchParameters

Copy constructor

src/openms/include/OpenMS/METADATA/ProteinIdentification.h:265

↓ 12 callersMethodaddPoints

src/openms/source/DATASTRUCTURES/ConvexHull2D.cpp:181

↓ 12 callersFunctionappendRVector

src/openms/source/ANALYSIS/TARGETED/TargetedExperiment.cpp:19

↓ 12 callersMethodcacheChunk

@brief Prefetch a new cache in the background, with up to @p suggested_size entries (or fewer upon reaching end-of-file) Call @p activateCache()

src/openms/include/OpenMS/DATASTRUCTURES/FASTAContainer.h:110

↓ 12 callersMethodcompareStrings

src/openms/source/CONCEPT/FuzzyStringComparator.cpp:523

↓ 12 callersMethodcreateMemdumpIndex

src/openms/source/FORMAT/HANDLERS/CachedMzMLHandler.cpp:117

↓ 12 callersMethoddecodeNP

src/openms/source/FORMAT/MSNumpressCoder.cpp:47

↓ 12 callersMethodenableTransition

src/openms/source/ANALYSIS/ID/HiddenMarkovModel.cpp:695

↓ 12 callersMethoderase

* @brief Erases element on given iterator. */

src/openms/include/OpenMS/COMPARISON/CLUSTERING/HashGrid.h:309

↓ 12 callersMethodextractChannels

src/openms/source/ANALYSIS/QUANTITATION/IsobaricChannelExtractor.cpp:416

↓ 12 callersFunctionfilterHitsByScore

src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:756

↓ 12 callersMethodfindEntry

src/openms/source/DATASTRUCTURES/Param.cpp:221

↓ 12 callersFunctionfindSpectrumByName

src/tests/class_tests/openms/source/TargetedSpectraExtractor_test.cpp:24

↓ 12 callersFunctionfromXSDString

* @brief Convert an XSD type (e.g. 'xsd:double') to a DataValue. * * Not all conversions are supported yet, due to DataValue using an I

src/openms/include/OpenMS/FORMAT/HANDLERS/XMLHandler.h:406

↓ 12 callersMethodfromXY

src/openms/include/OpenMS/KERNEL/DimMapper.h:709

↓ 12 callersMethodgetChromatogramById

src/openms/source/KERNEL/OnDiscMSExperiment.cpp:31

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