Method transform

src/openms/source/FORMAT/MzMLFile.cpp:168–181

  }

  void MzMLFile::transform(const String& filename_in, Interfaces::IMSDataConsumer* consumer, bool skip_full_count, bool skip_first_pass)
  {
    // First pass through the file -> get the meta-data and hand it to the consumer
    if (!skip_first_pass) transformFirstPass_(filename_in, consumer, skip_full_count);

    // Second pass through the data, now read the spectra!
    {
      PeakMap dummy;
      Internal::MzMLHandler handler(dummy, filename_in, getVersion(), *this);
      handler.setOptions(options_);
      handler.setMSDataConsumer(consumer);
      safeParse_(filename_in, &handler);
    }
  }

  void MzMLFile::transform(const String& filename_in, Interfaces::IMSDataConsumer* consumer, PeakMap& map, bool skip_full_count, bool skip_first_pass)
  {