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Functions351 in github.com/OpenGene/fastplong

⨍ Functions 351◇ Types & classes 61

Methodset_option

src/cmdline.h:601

Methodset_program_name

src/cmdline.h:353

Methodshort_description

src/cmdline.h:684

Methodshort_name

src/cmdline.h:676

src/singleproducersingleconsumerlist.h:89

Functionstarts_with

Functionstr2lower

Functionstr2upper

Functionstr_keep_alpha

Remove non alphabetic characters from a string

src/cmdline.h:127

src/read.cpp:115

MethodtoStringWithTag

src/read.cpp:175

MethodtrimByMultiSequences

src/adaptertrimmer.cpp:42

MethodtrimBySequenceEnd

src/adaptertrimmer.cpp:238

MethodtrimBySequenceStart

src/adaptertrimmer.cpp:168

MethodtrimPolyX

src/polyx.cpp:11

MethodupdateFullStatus

src/readpool.cpp:50

src/cmdline.h:664

src/cmdline.h:140

MethodwriteEmptyFilesForSplitting

if a task of writting N files is assigned to this thread, but the input file doesn't have so many reads to input write some empty files so it will not

src/threadconfig.cpp:112

MethodwriteInternal

src/writer.cpp:110

MethodwriterTask

src/seprocessor.cpp:470

Method~AdapterTrimmer

src/adaptertrimmer.cpp:10

Method~Evaluator

src/evaluator.cpp:13

Method~FastaReader

src/fastareader.cpp:40

Method~FastqReader

src/fastqreader.cpp:56

Method~FastqReaderPair

src/fastqreader.cpp:401

src/filter.cpp:9

Method~FilterResult

src/filterresult.cpp:18

Method~HtmlReporter

src/htmlreporter.cpp:11

Method~JsonReporter

src/jsonreporter.cpp:7

Method~NucleotideNode

src/nucleotidetree.cpp:9

Method~NucleotideTree

src/nucleotidetree.cpp:38

src/polyx.cpp:8

Method~Processor

src/processor.cpp:9

src/read.cpp:24

Method~ReadPair

src/read.cpp:269

Method~ReadPool

src/readpool.cpp:16

Method~Sequence

src/sequence.cpp:16

Method~SingleEndProcessor

src/seprocessor.cpp:28

Method~SingleProducerSingleConsumerList

src/singleproducersingleconsumerlist.h:80

src/stats.cpp:121

Method~ThreadConfig

src/threadconfig.cpp:19

src/writer.cpp:43

Method~WriterThread

src/writerthread.cpp:20

Method~cmdline_error

src/cmdline.h:139

Method~option_base

src/cmdline.h:625

Method~option_with_value

src/cmdline.h:707

Method~option_without_value

src/cmdline.h:647

src/cmdline.h:314

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