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Functions351 in github.com/OpenGene/fastplong

⨍ Functions 351◇ Types & classes 61

↓ 113 callersMethodlength

src/read.cpp:111

↓ 69 callersMethodadd

src/cmdline.h:320

↓ 45 callersFunctionerror_exit

↓ 44 callersMethodsize

src/readpool.cpp:54

↓ 29 callersMethodexist

src/cmdline.h:357

↓ 10 callersFunctionends_with

↓ 10 callersFunctionreplace

↓ 10 callersMethodresize

src/read.cpp:62

↓ 7 callersMethodaddSeq

src/nucleotidetree.cpp:42

↓ 7 callersFunctionloginfo

↓ 6 callersFunctionedit_distance

src/editdistance.cpp:100

↓ 6 callersMethodeof

src/fastqreader.cpp:215

↓ 6 callersFunctionfile_exists

Check if a string is a file or directory

↓ 6 callersMethodgetFilterResult

src/threadconfig.h:23

↓ 5 callersMethodcanBeConsumed

src/singleproducersingleconsumerlist.h:92

↓ 4 callersMethodaddAdapterTrimmed

src/filterresult.cpp:68

↓ 4 callersMethodconsume

src/singleproducersingleconsumerlist.h:109

↓ 4 callersMethodgetBytes

src/fastqreader.cpp:190

↓ 4 callersFunctionhuman_format

parallel.py:248

↓ 4 callersMethodproduce

src/singleproducersingleconsumerlist.h:97

↓ 4 callersMethodread

src/fastqreader.cpp:288

↓ 3 callersMethodgetBases

src/stats.cpp:439

↓ 3 callersMethodgetDominantPath

src/nucleotidetree.cpp:57

↓ 3 callersMethodgetPostStats1

src/threadconfig.h:21

↓ 3 callersMethodgetPreStats1

src/threadconfig.h:20

↓ 3 callersMethodgetReads

src/stats.cpp:433

↓ 3 callersMethodgetThreadId

src/threadconfig.h:30

↓ 3 callersMethodinput

src/readpool.cpp:20

↓ 3 callersFunctionis_directory

check if a string is a directory

↓ 3 callersMethodprint

src/read.cpp:41

↓ 3 callersMethodreportJson

src/stats.cpp:473

↓ 3 callersMethodshort_name

src/cmdline.h:747

↓ 2 callersFunctionTransform1Reversed

src/simdutil.h:10

↓ 2 callersMethodcalcLengthHistogram

src/stats.cpp:377

↓ 2 callersFunctioncheck_file_valid

↓ 2 callersMethoddetectLowQualityRegions

src/filter.cpp:83

↓ 2 callersFunctiondirname

↓ 2 callersMethodgetCycles

src/stats.cpp:427

↓ 2 callersMethodgetFilterReadStats

src/filterresult.h:31

↓ 2 callersMethodgetGCNumber

src/stats.cpp:457

↓ 2 callersFunctiongetKnownAdapter

src/knownadapters.h:11

↓ 2 callersMethodgetMeanLength

src/stats.cpp:258

↓ 2 callersMethodgetQ20

src/stats.cpp:445

↓ 2 callersMethodgetQ30

src/stats.cpp:451

↓ 2 callersMethodhas_value

src/cmdline.h:713

↓ 2 callersMethodmarkProcessed

src/threadconfig.cpp:88

↓ 2 callersMethodoutput

src/writerthread.cpp:37

↓ 2 callersMethodreporHtmlMedianQualHist

src/stats.cpp:590

↓ 2 callersMethodreporHtmlMedianQualLengthDensity

src/stats.cpp:671

↓ 2 callersMethodreport

src/jsonreporter.cpp:11

↓ 2 callersMethodreportHtmlBasicInfo

src/stats.cpp:720

↓ 2 callersMethodreportHtmlContents

src/stats.cpp:924

↓ 2 callersMethodreportHtmlKMER

src/stats.cpp:746

↓ 2 callersMethodreportHtmlQuality

src/stats.cpp:847

↓ 2 callersFunctionreverse

↓ 2 callersMethodset

src/cmdline.h:715

↓ 2 callersMethodsetInputCompleted

src/writerthread.cpp:29

↓ 2 callersMethodsetProducerFinished

src/singleproducersingleconsumerlist.h:124

↓ 2 callersMethodstatRead

src/stats.cpp:265

↓ 2 callersMethodsummarize

src/stats.cpp:150

↓ 2 callersFunctiontrim

↓ 2 callersMethodtrimAndCut

src/filter.cpp:130

↓ 2 callersMethodtrimFront

src/read.cpp:69

↓ 2 callersMethodwrite

src/writer.cpp:98

↓ 2 callersFunctionwriteBaseCountsJson

src/filterresult.cpp:187

↓ 1 callersMethodadapterCuttingEnabled

src/options.cpp:27

↓ 1 callersMethodaddFilterResult

src/threadconfig.cpp:67

↓ 1 callersMethodaddPolyXTrimmed

src/filterresult.cpp:78

↓ 1 callersMethodaddReadTrimmed

src/filterresult.cpp:63

↓ 1 callersMethodappendToString

src/read.cpp:119

↓ 1 callersMethodappendToStringWithTag

src/read.cpp:145

↓ 1 callersFunctionbasename

↓ 1 callersMethodbreakByGap

src/read.cpp:192

↓ 1 callersMethodbreakByRegions

src/read.cpp:227

↓ 1 callersMethodbufferLength

src/writerthread.h:31

↓ 1 callersMethodcanBeStopped

src/threadconfig.cpp:120

↓ 1 callersMethodclose

src/writer.cpp:135

↓ 1 callersFunctiondemangle

src/cmdline.h:105

↓ 1 callersMethodevalAdapterAndReadNum

src/evaluator.cpp:105

↓ 1 callersMethodevaluateReadNum

src/evaluator.cpp:63

↓ 1 callersMethodevaluateSeqLenAndCheckRNA

src/evaluator.cpp:16

↓ 1 callersMethodfastMerge

src/read.cpp:280

↓ 1 callersFunctiongenerate_summary_html

(report_dir, fastplone_cmd=None)

parallel.py:133

↓ 1 callersFunctiongetBaseName

↓ 1 callersMethodgetFilename

src/writerthread.h:32

↓ 1 callersMethodgetInput

src/threadconfig.h:40

↓ 1 callersMethodgetOne

src/readpool.cpp:62

↓ 1 callersMethodgetReadEndAdapter

src/options.cpp:254

↓ 1 callersMethodgetReadStartAdapter

src/options.cpp:247

↓ 1 callersMethodgetTotalPolyXTrimmedBases

src/filterresult.cpp:90

↓ 1 callersMethodgetTotalPolyXTrimmedReads

src/filterresult.cpp:83

↓ 1 callersMethodgetWriter1

src/threadconfig.h:22

↓ 1 callersMethodhas_set

src/cmdline.h:730

↓ 1 callersMethodinitWriterForSplit

src/threadconfig.cpp:72

↓ 1 callersMethodint2seq

src/evaluator.cpp:485

↓ 1 callersMethodisCompleted

src/writerthread.cpp:24

↓ 1 callersMethodisProducerFinished

src/singleproducersingleconsumerlist.h:118

↓ 1 callersFunctionjoinpath

↓ 1 callersMethodlastIndex

src/read.cpp:75

↓ 1 callersMethodlength

src/sequence.cpp:25

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