Functions — github.com/OpenGene/fastplong

CodeHub MCPcopy Create free account

hub / github.com/OpenGene/fastplong / functions

Functions351 in github.com/OpenGene/fastplong

⨍ Functions 351◇ Types & classes 61

↓ 1 callersMethodloadFastaAdapters

src/options.cpp:39

↓ 1 callersFunctionmain

parallel.py:414

↓ 1 callersMethodmaskRegionWithN

src/read.cpp:217

↓ 1 callersMethodmust

src/cmdline.h:739

↓ 1 callersFunctionnum2qual

↓ 1 callersFunctionparseCommand

↓ 1 callersMethodparse_check

src/cmdline.h:527

↓ 1 callersMethodpassFilter

src/filter.cpp:12

↓ 1 callersMethodpolyXTrimmingEnabled

src/options.cpp:35

↓ 1 callersMethodprocess

src/processor.cpp:12

↓ 1 callersFunctionprocessDir

(folder, options)

↓ 1 callersMethodreadAll

src/fastareader.cpp:95

↓ 1 callersMethodreportAdapterJson

src/filterresult.cpp:171

↓ 1 callersMethodreportHtml

src/filterresult.cpp:227

↓ 1 callersMethodreportPolyXTrimJson

src/filterresult.cpp:198

↓ 1 callersMethodreverseComplement

src/read.cpp:55

↓ 1 callersMethodseq2int

src/evaluator.cpp:499

↓ 1 callersMethodsetConsumerFinished

src/singleproducersingleconsumerlist.h:127

↓ 1 callersMethodsetInputList

src/threadconfig.cpp:46

↓ 1 callersMethodsetReadPool

src/fastqreader.cpp:66

↓ 1 callersMethodshallDetectAdapter

src/options.cpp:209

↓ 1 callersMethodshort_description

src/cmdline.h:755

↓ 1 callersFunctionstr_keep_valid_sequence

Remove invalid sequence characters from a string

↓ 1 callersMethodusage

src/cmdline.h:556

↓ 1 callersMethodvalid

src/cmdline.h:734

↓ 1 callersMethodvalidate

src/options.cpp:68

↓ 1 callersMethodwriteString

src/writer.cpp:90

MethodAdapterOptions

src/options.h:127

MethodAdapterTrimmer

src/adaptertrimmer.cpp:6

MethodBreakOptions

src/options.h:35

MethodEvaluator

src/evaluator.cpp:8

MethodFastaReader

src/fastareader.cpp:6

MethodFastqReader

src/fastqreader.cpp:34

MethodFastqReaderPair

src/fastqreader.cpp:387

src/filter.cpp:4

MethodFilterResult

src/filterresult.cpp:7

MethodHtmlReporter

src/htmlreporter.cpp:7

MethodJsonReporter

src/jsonreporter.cpp:3

MethodLockFreeListItem

src/singleproducersingleconsumerlist.h:48

MethodLowComplexityFilterOptions

src/options.h:48

MethodMaskOptions

src/options.h:22

MethodNucleotideNode

src/nucleotidetree.cpp:4

MethodNucleotideTree

src/nucleotidetree.cpp:32

src/options.cpp:8

src/polyx.cpp:4

MethodPolyXTrimmerOptions

src/options.h:60

MethodProcessor

src/processor.cpp:4

MethodQualityCutOptions

src/options.h:71

MethodQualityFilteringOptions

src/options.h:164

MethodReadLengthFilteringOptions

src/options.h:188

src/read.cpp:264

src/readpool.cpp:7

src/sequence.cpp:9

MethodSingleEndProcessor

src/seprocessor.cpp:14

MethodSingleProducerSingleConsumerList

src/singleproducersingleconsumerlist.h:65

MethodSplitOptions

src/options.h:102

src/stats.cpp:9

test/filter_test.cpp:4

test/adaptertrimmer_test.cpp:4

test/sequence_test.cpp:4

test/fastqreader_test.cpp:4

test/polyx_test.cpp:4

test/nucleotidetree_test.cpp:5

test/evaluator_test.cpp:4

test/read_test.cpp:4

test/fastareader_test.cpp:4

MethodThreadConfig

src/threadconfig.cpp:4

MethodTrimmingOptions

src/options.h:149

src/writer.cpp:29

MethodWriterThread

src/writerthread.cpp:6

src/cmdline.h:178

MethodaddFilterResult

src/filterresult.cpp:22

src/stats.cpp:411

MethodbufferFinished

src/fastqreader.cpp:71

src/cmdline.h:49

src/cmdline.h:62

src/cmdline.h:70

src/cmdline.h:80

src/cmdline.h:589

Functioncheck_file_writable

Functioncheck_filename_valid

src/readpool.cpp:31

src/writerthread.cpp:56

src/threadconfig.cpp:23

MethodclearLineBreaks

src/fastqreader.cpp:202

src/fastqreader.cpp:349

MethodcloseOutput

src/seprocessor.cpp:45

Methodcmdline_error

src/cmdline.h:138

Functioncomplement

MethodconvertPhred64To33

src/read.cpp:35

MethodcurrentDescription

src/fastareader.h:30

MethodcurrentID

src/fastareader.h:25

MethodcurrentSequence

src/fastareader.h:35

Functiondefault_value

src/cmdline.h:121

MethoddeleteWriter

src/writerthread.cpp:65

MethoddeleteWriter

src/threadconfig.cpp:50

src/nucleotidetree.cpp:15

Functionedit_distance_bpv

src/editdistance.cpp:31

Functionedit_distance_dp

src/editdistance.cpp:66

← previous next →101–200 of 351, ranked by callers