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Functions3,919 in github.com/bbuchfink/diamond

⨍ Functions 3,919◇ Types & classes 804

↓ 11 callersMethodreverse

src/dp/score_profile.h:49

↓ 10 callersMethodcols

src/dp/swipe/full_matrix.h:85

↓ 10 callersMethodend

src/lib/mio/mmap.hpp:222

↓ 10 callersMethodeof

src/util/io/file.cpp:389

↓ 10 callersMethodfinish

src/search/seed_array/seed_histogram.cpp:62

↓ 10 callersMethodframe

src/output/output_format.cpp:79

↓ 10 callersFunctionfrom_bits

src/util/math/math.h:26

↓ 10 callersFunctiongood

src/util/algo/sort_helper.h:34

↓ 10 callersFunctioni

src/util/geo/geo.h:25

↓ 10 callersFunctionmatch_block_reduced

src/search/sse_dist.h:105

↓ 10 callersMethodname

src/stats/score_matrix.h:229

↓ 10 callersMethodop

src/basic/match.h:145

↓ 10 callersMethodoperator->

src/util/optional.h:129

↓ 10 callersMethodpush_back

src/util/text_buffer.h:112

↓ 10 callersMethodpush_back

src/util/data_structures/flat_array.h:50

↓ 10 callersMethodpush_terminator

src/basic/packed_transcript.h:196

↓ 10 callersMethodquery_source_range

src/align/legacy/query_mapper.h:65

↓ 10 callersMethodrbegin

src/lib/mio/mmap.hpp:234

↓ 10 callersFunctionrmdir

src/util/system/system.cpp:296

↓ 10 callersMethodshrink_to_fit

src/data/string_set.h:66

↓ 10 callersMethodstrand

src/align/legacy/query_mapper.h:69

↓ 10 callersMethodsubject_begin

src/util/geo/diagonal_segment.h:48

↓ 10 callersFunctiontransform

src/util/algo/transform_iterator.h:71

↓ 10 callersMethodungapped_score

src/contrib/dna/seed_set_dna.h:29

↓ 10 callersMethodwrite

src/search/hit_buffer.h:98

↓ 10 callersMethodwrite_c_str

src/util/io/file.cpp:253

↓ 10 callersFunctionzero

src/util/simd/vector8_sse.h:96

↓ 9 callersMethodabsolute

src/basic/translated_position.h:121

↓ 9 callersFunctionall_vs_all

src/search/hamming/kernel.h:29

↓ 9 callersMethodbegin

src/dp/swipe/banded_3frame_swipe.cpp:95

↓ 9 callersMethodbegin

src/util/range.h:32

↓ 9 callersMethodbit_score

src/basic/match.h:387

↓ 9 callersFunctionclz

src/util/intrin.h:68

↓ 9 callersMethoderase

src/util/algo/join_result.h:85

↓ 9 callersMethodfill

src/data/string_set.h:103

↓ 9 callersMethodhas_value

src/util/optional.h:113

↓ 9 callersMethodkey

src/util/util.h:296

↓ 9 callersMethodkey

src/cluster/multinode/output.cpp:80

↓ 9 callersMethodpartition

src/data/sequence_set.cpp:57

↓ 9 callersMethodpenalty

src/contrib/dna/build_score.h:30

↓ 9 callersMethodpush_match

src/basic/hssp.cpp:260

↓ 9 callersMethodread_c_str

src/util/io/file.cpp:332

↓ 9 callersMethodread_packed

src/util/binary_buffer.h:63

↓ 9 callersMethodread_varint

src/util/binary_buffer.h:79

↓ 9 callersMethodrequire

src/util/command_line_parser.cpp:147

↓ 9 callersMethodreserve

src/lib/alp/njn_dynprogprob.cpp:250

↓ 9 callersFunctionset_channel

src/dp/swipe/stat_cell.h:101

↓ 9 callersMethodsize

src/util/data_structures/deque.h:72

↓ 9 callersMethodsubject_last

src/util/geo/diagonal_segment.h:51

↓ 9 callersFunctionswipe

src/tools/benchmark.cpp:305

↓ 9 callersMethodtaxids

src/legacy/dmnd/dmnd.cpp:582

↓ 9 callersFunctiontranspose

src/util/simd/transpose.h:32

↓ 9 callersMethodwait_and_dequeue

src/util/data_structures/queue.h:81

↓ 8 callersFunctionReadBE32

src/data/blastdb/ber.h:23

↓ 8 callersMethodapprox_id_percent

src/basic/hssp.cpp:389

↓ 8 callersMethodbarrier

* Barrier: Execution resumes only after all threads reached this point. */

src/lib/ips4o/synchronization.hpp:95

↓ 8 callersFunctionbin

src/dp/swipe/swipe_wrapper.cpp:69

↓ 8 callersFunctioncleanup

src/util/util.cpp:47

↓ 8 callersFunctioncomposition

src/stats/cbs.cpp:54

↓ 8 callersMethodempty

src/basic/sequence.h:88

↓ 8 callersMethodend

src/search/seed_array/seed_histogram.h:41

↓ 8 callersFunctionenum_seeds

Search::SeedStats FLATTEN enum_seeds(SequenceSet* seqs, F* f, unsigned begin, unsigned end, const Filter* filter, const EnumCfg& cfg)

src/search/seed_array/enum_seeds.h:58

↓ 8 callersMethodeof

src/data/fasta/fasta_file.cpp:154

↓ 8 callersFunctionexists

src/util/system/system.cpp:128

↓ 8 callersMethodextendCigar

src/contrib/dna/alignment.h:56

↓ 8 callersFunctionflag_all

src/util/enum.h:78

↓ 8 callersFunctionformat

src/util/string/string.cpp:180

↓ 8 callersMethodjoin_all

src/util/parallel/simple_thread_pool.h:135

↓ 8 callersFunctionmkdir

src/util/system/system.cpp:282

↓ 8 callersMethodnext

src/util/string/tokenizer.h:48

↓ 8 callersMethodoperator+=

src/util/text_buffer.h:64

↓ 8 callersMethodpositives

src/basic/match.h:404

↓ 8 callersMethodprint_query_epilog

src/output/xml_format.cpp:144

↓ 8 callersMethodprint_query_intro

src/output/xml_format.cpp:132

↓ 8 callersMethodpush_gap

src/basic/hssp.cpp:276

↓ 8 callersMethodquery_begin

src/util/geo/diagonal_segment.h:63

↓ 8 callersMethodran2

src/lib/alp/sls_alp_data.hpp:386

↓ 8 callersFunctionround_up

src/util/util.h:35

↓ 8 callersMethodscore

src/basic/seed.h:65

↓ 8 callersFunctionsize

* Returns the size of the interval. */

src/lib/interval_tree/interval_tree.hpp:159

↓ 8 callersMethodsort

src/chaining/greedy_align.cpp:95

↓ 8 callersFunctionstore

src/util/simd/vector8_sse.h:116

↓ 8 callersMethodwrite_until

src/util/text_buffer.h:116

↓ 7 callersMethodadd

src/masking/masking.cpp:84

↓ 7 callersMethodawait

src/util/parallel/atomic.h:67

↓ 7 callersMethodbegin

src/legacy/daa/daa_record.h:109

↓ 7 callersMethodbegin

src/lib/mio/mmap.hpp:211

↓ 7 callersMethodbins

src/search/hit_buffer.h:55

↓ 7 callersFunctionbit_length

src/util/math/integer.h:42

↓ 7 callersMethodbitscore_corrected

src/stats/score_matrix.cpp:231

↓ 7 callersMethodcbegin

src/data/string_set.h:248

↓ 7 callersMethodcbegin

src/util/data_structures/flat_array.h:96

↓ 7 callersMethodcreate_stack_from_file

src/util/parallel/parallelizer.cpp:212

↓ 7 callersMethoddiag

src/util/geo/diagonal_segment.h:70

↓ 7 callersMethodend

src/data/fasta/fasta_file.cpp:198

↓ 7 callersMethodeof

src/data/blastdb/blastdb.cpp:192

↓ 7 callersFunctionf

src/lib/alp/njn_root.hpp:185

↓ 7 callersMethodgetProb

src/lib/alp/njn_dynprogprob.hpp:158

↓ 7 callersMethodget_stack

src/util/parallel/parallelizer.cpp:220

↓ 7 callersMethodgood

src/util/kmer/kmer.h:74

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