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Types & classes804 in github.com/bbuchfink/diamond

⨍ Functions 3,919◇ Types & classes 804

↓ 142 callersClasserror

src/lib/alp/sls_basic.hpp:59

↓ 97 callersClassstring

src/util/memory/memory_resource.h:74

↓ 55 callersClassScoreVector

src/dp/score_vector.h:30

↓ 45 callersClassSequence

src/basic/sequence.h:31

↓ 44 callersClassOperationNotSupported

src/data/sequence_file.h:42

↓ 27 callersClassTranslatedPosition

src/basic/translated_position.h:54

↓ 25 callersClassInterval

src/util/geo/interval.h:26

↓ 14 callersClassFrame

src/align/legacy/query_mapper.h:89

↓ 14 callersClassFrame

src/basic/translated_position.h:26

↓ 13 callersClassTokenizerException

src/util/string/tokenizer.h:29

↓ 11 callersClassGetKey

src/tools/greedy_vertex_cover.cpp:60

↓ 11 callersClassHsp

src/basic/match.h:45

↓ 10 callersClassDiagonalSegment

src/util/geo/diagonal_segment.h:23

↓ 10 callersClassTranslatedSequence

src/basic/sequence.h:226

↓ 9 callersClassAccessionParsing

src/util/sequence/sequence.h:45

↓ 9 callersClassCharDelimiter

src/util/string/tokenizer.h:40

↓ 7 callersClassCarryOver

↓ 7 callersClassFingerPrint

src/search/hamming/finger_print.h:33

↓ 6 callersClassApproxHsp

src/util/hsp/approx_hsp.h:58

↓ 6 callersClassPackedOperation

src/basic/packed_transcript.h:30

↓ 6 callersClassTemporary

src/util/io/file.h:36

↓ 6 callersEnumvalue

src/basic/statistics.h:30

↓ 5 callersClassChunk

src/data/sequence_file.h:28

↓ 5 callersClassHspContext

src/basic/match.h:281

↓ 5 callersClassIterator

src/util/data_structures/deque.h:89

↓ 5 callersClassMurmurHash

src/util/hash_function.h:21

↓ 4 callersClassCell

src/util/data_structures/queue.h:141

↓ 4 callersClassMatch

src/align/extend.h:35

↓ 4 callersClassScoreMatrix

src/stats/score_matrix.h:59

↓ 4 callersClassSeedHistogram

src/search/seed_array/seed_histogram.h:75

↓ 4 callersClassSeqInfo

src/data/sequence_file.h:120

↓ 4 callersClassShapeConfig

src/basic/shape_config.h:25

↓ 4 callersClassStats

src/dp/swipe/config.h:31

↓ 4 callersClassTargetMatrix

src/stats/cbs.h:47

↓ 3 callersClassAlignMode

src/basic/value.h:119

↓ 3 callersClassAnchor

src/util/hsp/approx_hsp.h:26

↓ 3 callersClassColumnIterator

src/dp/swipe/banded_matrix.h:34

↓ 3 callersClassFormatDetectionError

src/data/sequence_file.h:71

↓ 3 callersEnumHspValues

src/dp/flags.h:31

↓ 3 callersClassIntervalNode

src/util/geo/interval_partition.h:25

↓ 3 callersClassMaxScore

src/util/geo/interval_partition.h:49

↓ 3 callersClassRank

src/data/taxonomy_nodes.h:29

↓ 3 callersClassReversed

src/basic/packed_transcript.h:28

↓ 3 callersClassStringDelimiters

src/util/string/tokenizer.h:82

↓ 3 callersClassbad_optional_access

src/util/optional.h:32

↓ 3 callersClassopen

src/lib/interval_tree/interval_types.hpp:33

↓ 2 callersClassCmpQueryTarget

src/search/hit.h:120

↓ 2 callersClassCmpSubject

src/search/hit.h:113

↓ 2 callersClassColumnIterator

src/dp/swipe/banded_3frame_swipe.cpp:47

↓ 2 callersClassColumnIterator

src/dp/swipe/full_matrix.h:29

↓ 2 callersClassConfig

src/run/config.h:85

↓ 2 callersClassConstIterator

src/data/string_set.h:189

↓ 2 callersClassConstIterator

src/util/data_structures/sparse_flat_array.h:92

↓ 2 callersClassConstIterator

src/util/data_structures/flat_array.h:116

↓ 2 callersClassCountIdentities

src/dp/ungapped_align.cpp:130

↓ 2 callersClassDpTarget

↓ 2 callersClassEntry

src/search/seed_array/seed_array.h:51

↓ 2 callersClassFlatIterator

src/util/data_structures/sparse_flat_array.h:116

↓ 2 callersClassIndexIterator

src/util/util.h:184

↓ 2 callersClassIterator

src/basic/match.h:105

↓ 2 callersClassIterator

src/util/data_structures/sparse_flat_array.h:68

↓ 2 callersClassIterator

src/util/data_structures/flat_array.h:143

↓ 2 callersClassKswCigar

src/contrib/dna/extension.h:66

↓ 2 callersClassLength

src/contrib/mcl/clustering_variables.h:134

↓ 2 callersClassMalformedFastqRecord

src/data/fasta/parser.h:227

↓ 2 callersClassPackedLocId

src/search/seed_array/flags.h:43

↓ 2 callersClassRound

src/run/config.h:65

↓ 2 callersClassScoreOnly

src/dp/ungapped_align.cpp:145

↓ 2 callersClassShape

src/basic/shape.h:29

↓ 2 callersClassSkip

src/util/string/tokenizer.h:38

↓ 2 callersClassSorter

src/lib/ips4o/ips4o_fwd.hpp:60

↓ 2 callersClassStringDelimiter

src/util/string/tokenizer.h:60

↓ 2 callersClassTracebackIterator

src/dp/swipe/banded_matrix.h:192

↓ 2 callersClassVolumedFile

src/cluster/volume.h:70

↓ 2 callersClassWfaCigar

src/contrib/dna/extension.h:71

↓ 2 callersClassstat

src/util/system/system.cpp:132

↓ 1 callersClassAccessionNotFound

src/data/sequence_file.h:39

↓ 1 callersClassAddFunc

src/util/command_line_parser.h:205

↓ 1 callersClassBlastVolume

src/data/blastdb/volume.h:61

↓ 1 callersClassCBS

src/stats/cbs.h:107

↓ 1 callersClassCentroidSorted

src/cluster/cluster.h:45

↓ 1 callersClassChain

src/contrib/dna/chain.h:62

↓ 1 callersClassCharRepresentation

src/basic/value.h:29

↓ 1 callersClassCmpOid

src/align/global_ranking/global_ranking.h:80

↓ 1 callersClassCmpOidScore

src/align/global_ranking/global_ranking.h:75

↓ 1 callersClassCmpTargetOffset

src/search/hit.h:125

↓ 1 callersClassColumn_iterator

src/dp/scalar/smith_waterman.cpp:120

↓ 1 callersClassConstIterator

src/basic/packed_transcript.h:102

↓ 1 callersClassCustom

src/stats/score_matrix.h:62

↓ 1 callersClassDAA_header1

src/legacy/daa/daa_file.h:30

↓ 1 callersClassDatabaseFormatException

src/legacy/dmnd/dmnd.h:69

↓ 1 callersClassDegreePartition

src/util/algo/degree_partition.h:29

↓ 1 callersClassDiagonalSegmentT

src/util/geo/diagonal_segment.h:156

↓ 1 callersClassDynamicRecordReader

src/legacy/dmnd/record_reader.h:26

↓ 1 callersClassEdge

src/chaining/diag_graph.h:86

↓ 1 callersEnumFieldId

src/output/output_format.h:48

↓ 1 callersClassFile

src/util/io/file.h:38

↓ 1 callersClassFinish

src/legacy/dmnd/record_reader.h:24

↓ 1 callersClassHardmasked

src/basic/sequence.h:35

↓ 1 callersClassIterator

src/util/binary_buffer.h:33

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