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Functions3,919 in github.com/bbuchfink/diamond

⨍ Functions 3,919◇ Types & classes 804

↓ 326 callersFunctionmax

src/lib/alp/njn_function.hpp:92

↓ 249 callersFunctionmin

src/lib/alp/njn_function.hpp:94

↓ 228 callersMethodpush_back

src/basic/hssp.cpp:107

↓ 225 callersMethodend

src/dp/dp.h:200

↓ 220 callersMethodsize

src/util/io/file.cpp:303

↓ 209 callersMethoddata

src/basic/sequence.h:68

↓ 203 callersMethodlength

src/data/blastdb/psq.cpp:89

↓ 168 callersMethodbegin

src/basic/match.h:163

↓ 138 callersMethodgo

src/util/log_stream.h:63

↓ 136 callersMethodemplace_back

src/dp/dp.h:249

↓ 131 callersMethodback

src/data/string_set.h:177

↓ 131 callersMethodsize

src/data/string_set.h:132

↓ 130 callersMethodempty

src/dp/dp.h:238

↓ 128 callersFunctionflag_any

src/util/enum.h:85

↓ 126 callersMethodend

src/cluster/input_buffer.h:96

↓ 124 callersMethodresize

src/util/data_structures/mem_buffer.h:47

↓ 117 callersMethodbegin

src/cluster/input_buffer.h:92

↓ 108 callersMethodlength

src/dp/score_profile.h:34

↓ 96 callersMethodsize

src/contrib/mcl/lazy_disjoint_set.h:226

↓ 93 callersMethodwrite

src/util/io/file.cpp:246

↓ 90 callersMethodreserve

src/dp/dp.h:227

↓ 89 callersMethodsize

src/search/seed_array/seed_array.h:108

↓ 87 callersFunctionto_string

src/util/enum.h:42

↓ 84 callersMethodsize

src/cluster/input_buffer.h:84

↓ 82 callersFunctionlog

src/util/math/math.h:101

↓ 79 callersMethodcount

src/util/util.h:299

↓ 67 callersMethodinsert

src/util/geo/interval_tree.h:33

↓ 66 callersFunctionmax

src/util/parallel/semaphore.h:56

↓ 65 callersFunctionexp

src/util/math/math.h:40

↓ 65 callersFunctionswap

src/util/optional.h:182

↓ 63 callersMethodget

src/output/target_culling.cpp:22

↓ 62 callersMethoddata

src/data/string_set.h:149

↓ 62 callersMethodsize

src/lib/alp/njn_vector.hpp:304

↓ 61 callersMethodfetch_add

src/util/parallel/filestack.cpp:477

↓ 59 callersMethodclear

src/basic/hssp.cpp:218

↓ 57 callersFunctionsort

src/lib/ips4o/ips4o.hpp:65

↓ 55 callersMethodfinish

src/cluster/multinode.h:60

↓ 55 callersMethodpresent

src/util/options/option.h:52

↓ 53 callersMethodlength

src/util/geo/interval.h:36

↓ 51 callersFunctioncopy

src/lib/alp/njn_matrix.hpp:608

↓ 51 callersMethodend

src/data/blastdb/volume.h:72

↓ 49 callersFunctionbig_endian_byteswap

src/util/system/endianness.h:42

↓ 49 callersMethodinc

src/basic/statistics.h:59

↓ 49 callersMethodpush_back

src/data/block/block.cpp:71

↓ 49 callersMethodset_elem

src/lib/alp/sls_alp_data.hpp:188

↓ 48 callersMethodjoin

src/util/parallel/thread_pool.h:223

↓ 48 callersMethodreset

src/util/io/zstd_bridge.cpp:31

↓ 46 callersMethodgood

src/basic/match.h:113

↓ 46 callersFunctionletter_mask

src/basic/value.h:71

↓ 44 callersMethodlength

src/search/seed_array/seed_iterator.h:229

↓ 42 callersMethoddiag

src/align/target.h:49

↓ 41 callersMethodend

src/data/string_set.h:116

↓ 40 callersMethodsubject_end

src/util/geo/diagonal_segment.h:59

↓ 37 callersMethodclear

src/lib/alp/njn_dynprogprob.cpp:73

↓ 36 callersMethodempty

src/util/data_structures/queue.h:107

↓ 36 callersMethodlog

src/cluster/multinode.cpp:45

↓ 35 callersMethodpush_back

src/util/data_structures/deque.h:45

↓ 34 callersMethodreset

src/chaining/greedy_align.cpp:142

↓ 33 callersMethodbegin

src/data/blastdb/volume.h:69

↓ 33 callersMethodreserve

src/data/string_set.h:51

↓ 32 callersMethodempty

src/data/block/block.cpp:50

↓ 32 callersMethodload

src/chaining/greedy_align.cpp:56

↓ 31 callersMethodend

src/util/algo/partition.h:43

↓ 31 callersMethodfind

src/dp/scalar/smith_waterman.cpp:67

↓ 31 callersMethodpush

src/util/parallel/filestack.cpp:351

↓ 30 callersMethodgetM

src/lib/alp/njn_matrix.hpp:89

↓ 30 callersMethodinc

src/dp/swipe/cell_update.h:31

↓ 30 callersMethodlength

src/basic/match.h:398

↓ 30 callersMethodread

src/legacy/daa/daa_record.cpp:53

↓ 30 callersMethodsize

src/legacy/dmnd/compact_array.h:45

↓ 29 callersMethodadd

src/util/util.h:51

↓ 29 callersMethodclose

src/cluster/file_array.h:50

↓ 29 callersFunctionfmadd128

---- FMA emulation ---------------------------------------------------------

src/stats/matrix_adjust/kernel_sse41.h:45

↓ 29 callersMethodread

src/util/io/file.cpp:315

↓ 29 callersMethodsize

src/dp/swipe/target_iterator.h:40

↓ 29 callersMethodstore

src/dp/swipe/cell_update.h:28

↓ 28 callersMethodbegin

src/data/fasta/fasta_file.cpp:194

↓ 28 callersMethodbegin

src/util/algo/partition.h:39

↓ 28 callersMethodgap_extend

src/stats/score_matrix.h:177

↓ 28 callersMethodsplice

src/basic/hssp.cpp:146

↓ 28 callersMethodwrite

src/cluster/file_array.h:68

↓ 27 callersFunctionabort

src/lib/alp/njn_ioutil.hpp:101

↓ 27 callersMethoddata

src/util/data_structures/array.h:50

↓ 27 callersMethoderase

src/util/ptr_vector.h:53

↓ 27 callersMethodgetN

src/lib/alp/njn_matrix.hpp:90

↓ 27 callersMethodletters

src/legacy/dmnd/dmnd.cpp:544

↓ 27 callersMethodmax

src/dp/swipe/stat_cell.h:88

↓ 27 callersMethodmicroseconds

src/util/log_stream.h:89

↓ 26 callersMethodclose

src/util/io/file.cpp:230

↓ 25 callersMethodbegin

src/dp/swipe/full_matrix.h:71

↓ 25 callersMethodget

src/search/seed_array/seed_iterator.h:38

↓ 25 callersMethodsequence_count

src/legacy/dmnd/dmnd.cpp:540

↓ 24 callersMethodpush_back

src/dp/swipe/target_iterator.h:44

↓ 24 callersMethodrow

src/stats/score_matrix.h:118

↓ 24 callersMethodsubseq

src/basic/sequence.h:158

↓ 23 callersMethodfind

src/util/algo/algo.h:100

↓ 23 callersMethodhigh

* Returns the upper bound of the interval of this node */

src/lib/interval_tree/interval_tree.hpp:300

↓ 23 callersFunctionlog_rss

src/util/system/system.cpp:176

↓ 23 callersMethodlow

* Returns the lower bound of the interval of this node */

src/lib/interval_tree/interval_tree.hpp:292

↓ 23 callersMethodsubject_range

src/util/geo/diagonal_segment.h:44

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