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Functions3,919 in github.com/bbuchfink/diamond

⨍ Functions 3,919◇ Types & classes 804

↓ 22 callersMethodassign

src/data/string_set.h:98

↓ 22 callersMethodbitscore

src/stats/score_matrix.cpp:254

↓ 22 callersMethodblank

src/search/hit.h:65

↓ 22 callersMethodclear

src/data/string_set.h:61

↓ 22 callersMethoddata

src/lib/mio/mmap.hpp:201

↓ 22 callersMethodempty

src/data/blastdb/volume.h:65

↓ 21 callersMethodbegin

src/search/hit_buffer.h:45

↓ 21 callersMethodgap_open

src/stats/score_matrix.h:172

↓ 21 callersMethodmatch

src/search/hamming/finger_print.h:51

↓ 21 callersMethodread

src/basic/packed_transcript.h:139

↓ 20 callersMethodbegin

src/search/seed_array/seed_array.h:92

↓ 20 callersMethodevalue

src/stats/score_matrix.cpp:218

↓ 20 callersMethodindex

src/basic/translated_position.h:38

↓ 20 callersMethodinterval

src/lib/interval_tree/interval_tree.hpp:220

↓ 20 callersMethodload

src/util/data_structures/hash_set.h:139

↓ 20 callersFunctionload_fps

src/search/hamming/finger_print.h:207

↓ 20 callersMethodoverlap_factor

src/util/geo/interval.h:44

↓ 19 callersMethodclose

src/data/blastdb/blastdb.cpp:358

↓ 19 callersMethodget

src/contrib/mcl/clustering_variables.h:112

↓ 19 callersMethodgetline

src/util/io/file.cpp:340

↓ 19 callersMethodload

src/search/hit_buffer.cpp:166

↓ 19 callersMethodseek

src/util/io/file.cpp:257

↓ 19 callersMethodset

src/search/hamming/hit_field.h:41

↓ 19 callersMethodsize

src/util/parallel/filestack.cpp:385

↓ 18 callersMethoddata

src/util/io/compressed_buffer.h:42

↓ 18 callersMethoddiagonal

src/align/legacy/query_mapper.h:45

↓ 18 callersMethodid

src/contrib/dna/seed_set_dna.h:33

↓ 18 callersMethodj

src/contrib/dna/seed_set_dna.h:32

↓ 18 callersMethodload_seqs

src/data/sequence_file.cpp:345

↓ 18 callersMethodmax

src/lib/interval_tree/interval_tree.hpp:225

↓ 18 callersMethodprint

src/basic/basic.cpp:181

↓ 18 callersMethodquery_end

src/util/geo/diagonal_segment.h:66

↓ 18 callersMethodunlock

src/util/parallel/filestack.cpp:132

↓ 17 callersMethodblock_id2oid

src/data/block/block.h:74

↓ 17 callersMethodcbegin

src/cluster/input_buffer.h:100

↓ 17 callersMethodcend

src/lib/mio/mmap.hpp:224

↓ 17 callersMethodclose

src/legacy/dmnd/dmnd.cpp:189

↓ 17 callersMethodend

src/util/range.h:36

↓ 17 callersMethodget_present

src/util/options/option.h:70

↓ 17 callersMethodi

src/contrib/dna/seed_set_dna.h:31

↓ 17 callersFunctionmerge_keys

src/util/util.h:310

↓ 17 callersMethodreserve

src/util/data_structures/deque.h:43

↓ 17 callersMethodset

src/dp/swipe/swipe.h:91

↓ 16 callersMethodcbegin

src/lib/mio/mmap.hpp:213

↓ 16 callersMethodfind

src/cluster/volume.h:125

↓ 16 callersMethodget

src/dp/score_profile.h:38

↓ 16 callersMethodget

src/dp/swipe/swipe.h:186

↓ 16 callersMethodincrease_elem_by_1

src/lib/alp/sls_alp_data.hpp:205

↓ 16 callersMethodj_start

src/contrib/dna/chain.h:77

↓ 16 callersMethodptr

src/util/optional.h:172

↓ 16 callersFunctionread

src/cluster/helpers.cpp:47

↓ 16 callersMethodreset

src/align/legacy/banded_swipe_pipeline.cpp:108

↓ 16 callersMethodwrite

src/output/output_format.cpp:106

↓ 15 callersMethodbase_dir

src/cluster/multinode.h:80

↓ 15 callersFunctionends_with

src/util/string/string.h:31

↓ 15 callersMethodfinish_reserve

src/data/string_set.h:43

↓ 15 callersMethoditerated

src/run/config.h:160

↓ 15 callersMethodlength

src/lib/mio/mmap.hpp:185

↓ 15 callersMethodlock

src/util/parallel/filestack.cpp:103

↓ 15 callersFunctionremove_tmp_file

src/util/system/system.cpp:480

↓ 15 callersMethodset_seqinfo_ptr

src/legacy/dmnd/dmnd.cpp:368

↓ 15 callersMethodtop

src/util/parallel/filestack.cpp:271

↓ 15 callersMethodwhat

src/legacy/dmnd/dmnd.h:71

↓ 14 callersFunctioncopy

src/util/parallel/multiprocessing.cpp:69

↓ 14 callersMethodempty

* Returns true if no mapping was established, that is, conceptually the * same as though the length that was mapped was 0. This function is

src/lib/mio/mmap.hpp:173

↓ 14 callersMethodgap_extend

src/contrib/dna/build_score.h:32

↓ 14 callersMethodi_start

src/contrib/dna/chain.h:74

↓ 14 callersMethodto_string

src/basic/value.h:129

↓ 13 callersFunctionblend

src/dp/swipe/stat_cell.h:28

↓ 13 callersMethodcend

src/cluster/input_buffer.h:104

↓ 13 callersMethodclear

src/util/parallel/filestack.cpp:413

↓ 13 callersMethodempty

src/data/fasta/fasta_file.cpp:190

↓ 13 callersMethodend

src/search/hit_buffer.h:50

↓ 13 callersMethodgap_open

src/contrib/dna/build_score.h:31

↓ 13 callersFunctionintersect

src/util/geo/interval.h:77

↓ 13 callersMethodroot_dir

src/cluster/multinode.h:76

↓ 13 callersMethodround

src/cluster/multinode.h:92

↓ 13 callersFunctionseqid

src/util/sequence/sequence.cpp:72

↓ 13 callersMethodsize

src/basic/reduction.h:33

↓ 13 callersMethodspawn

src/util/parallel/simple_thread_pool.h:105

↓ 12 callersMethodbegin

src/dp/swipe/banded_matrix.h:121

↓ 12 callersMethodenqueue

src/util/data_structures/queue.h:76

↓ 12 callersMethoderase

src/dp/swipe/target_iterator.h:48

↓ 12 callersMethodfinish

src/align/legacy/banded_swipe_pipeline.cpp:113

↓ 12 callersMethodget

src/output/join_blocks.cpp:179

↓ 12 callersMethodget

src/lib/ips4o/memory.hpp:140

↓ 12 callersFunctionget_ref_part_file_name

src/run/double_indexed.cpp:81

↓ 12 callersMethodinit

src/search/hamming/hit_field.h:34

↓ 12 callersMethodpop

src/util/parallel/filestack.cpp:257

↓ 12 callersMethodpop_back

src/util/data_structures/flat_array.h:65

↓ 12 callersMethodreward

src/contrib/dna/build_score.h:29

↓ 12 callersFunctions_SplitArrayOf8

src/lib/blast/blastn_score.cpp:1640

↓ 12 callersFunctionsearch_tile

src/search/stage2.h:157

↓ 11 callersMethodadjusted_matrix

src/dp/dp.h:115

↓ 11 callersMethodend

src/util/data_structures/deque.h:206

↓ 11 callersMethodidentities

src/basic/match.h:400

↓ 11 callersFunctionmemCpy

src/lib/alp/njn_memutil.hpp:78

↓ 11 callersMethodquery_range

src/align/target.h:56

↓ 11 callersMethodread_max

src/util/io/file.cpp:321

↓ 11 callersFunctionreverse

src/run/tools.cpp:217

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