Type of the adapted matrix

Checks that the binary runs correct set of tests for a given filter.

OS (small) page size

Type tag

Function: esl_strcat() * * Purpose: Dynamic memory version of strcat(). * Appends <src> to the string that <dest> points to, *

Function: esl_workqueue_ReaderUpdate() * Synopsis: Producer routine. * Incept: MSF, Thu Jun 18 11:51:39 2009 * * Purpose: The producer (i.e

Does this Optional have a value. @methodset Observers

Type tag

Whether this is a leaf node or not. This value doesn't change after the node is created.

Function: p7_pipeline_Reuse() * Synopsis: Reuse a pipeline for next target. * * Purpose: Reuse <pli> for next target sequence (search mode) *

todo naming convention violation!

todo naming convention violation!

Type tag

Sets the 8 signed 16-bit integer values to w. r0 := w r1 := w ... r7 := w https://msdn.microsoft.com/en-us/library/k0ya3x0e(v=vs.90).aspx

Shift a left by imm8 bytes while shifting in zeros, and store the results in dst. tmp := imm8[7:0] IF tmp > 15 tmp := 16 FI dst[127:0] := a[127:0] <<

Result type

Compile time column arguments

Type tag

Columns function !\brief Returns the current number of columns of the matrix. // // \return The number of columns of the matrix. */

Columns function !\brief Returns the current number of columns of the matrix. // // \return The number of columns of the matrix. */

Columns function !\brief Returns the current number of columns of the matrix. // // \return The number of columns of the matrix. */

Function: esl_mpi_PackOpt() * Synopsis: Pack an optional, variable-sized array (or string). * Incept: SRE, Sat Jun 2 08:40:39 2007 [Janelia]

Function: esl_mpi_PackOptSize() * Synopsis: Determine the size of a packed optional, variable-sized array. * Incept: SRE, Sat Jun 2 10:09:16 2

Function: esl_msafile_OpenFailure() * Synopsis: Report diagnostics of normal error in opening MSA file, and exit. * * Purpose: Report user-dire

Function: esl_msafile_Write() * Synopsis: Write an MSA to a stream. * * Purpose: Writes alignment <msa> to open stream <fp> in format <fmt>. *

Function: esl_stack_CPush() * Synopsis: Push a char onto a stack. * Incept: SRE, Sun Dec 26 09:18:24 2004 [Zaragoza] * * Purpose: Push a ch

Index function !\brief Access to the current index of the sparse element. // // \return The current index of the sparse element. */

Index function !\brief Access to the current index of the sparse element. // // \return The current index of the sparse element. */

!\brief Returns whether a serial section is active or not. // \ingroup smp // // \return \a true if a serial section is active, \a false if not. */

Rows function !\brief Returns the current number of rows of the matrix. // // \return The number of rows of the matrix. */

Rows function !\brief Returns the current number of rows of the matrix. // // \return The number of rows of the matrix. */

Rows function !\brief Returns the current number of rows of the matrix. // // \return The number of rows of the matrix. */

Size function !\brief Returns the current size/dimension of the vector. // // \return The size of the vector. */

Size function !\brief Returns the current size/dimension of the vector. // // \return The size of the vector. */

Size function !\brief Returns the current size/dimension of the vector. // // \return The size of the vector. */

Size function !\brief Returns the current size/dimension of the vector. // // \return The size of the vector. */

Square Root - this method computes and returns the square root of "this". Three mechanisms are used for computation. For small values (<= 5 bits), a t

Type tag

Value function !\brief Access to the current value of the sparse element. // // \return The current value of the sparse element. */

Does nothing if the current thread holds the mutex. Otherwise, crashes with high probability.

! * @internal * @brief Modify this function to use a different routine than memcpy(). */

NEON does not provide a version of this function. Creates a 16-bit mask from the most significant bits of the 16 signed or unsigned 8-bit integers in

Type of the bound argument

Function: esl_gumbel_surv() * Synopsis: Returns right tail mass above $x$, $P(S > x)$. * * Purpose: Calculates the survivor function, $P(X>x)$

Function: esl_vec_{DFIL}Sum() * Synopsis: Returns $\sum_i x_i$. * * Purpose: Returns the scalar sum of the <n> items in <vec>. *

Function: esl_workqueue_WorkerUpdate() * Synopsis: Consumer routine. * Incept: MSF, Thu Jun 18 11:51:39 2009 * * Purpose: The consumer (i.e

Storage order of the matrix