Load function !\brief Access to the SIMD elements of the vector. // // \param index Access index. The index has to be in the range \f$[0..N-1]\f

Function: esl_fatal() * Synopsis: Kill a program immediately, for a "violation". * * Purpose: Kill a program for a "violation". In general this

Store function !\brief Store of a SIMD element of the vector. // // \param index Access index. The index must be smaller than the number of vect

!\brief Sets all values in the vector to the given 'float' value. // \ingroup simd // // \param value The given 'float' value. // \return The set vect

Vector base type of the expression

Optional arguments

Optional arguments

Storage order

Compile time row arguments

Index function !\brief Access to the current index of the sparse element. // // \return The current index of the sparse element. */

Optional row arguments

Storage order of the matrix

Compile time row arguments

Storage order

Value function !\brief Access to the current value of the sparse element. // // \return The current value of the sparse element. */

Rows function !\brief Returns the current number of rows of the matrix. // // \return The number of rows of the matrix. */

Function: p7_Fail() * Synopsis: Handle a user error (something that's the user's fault). * Incept: SRE, Fri Jan 12 08:54:45 2007 [Janelia] */

Columns function !\brief Returns the current number of columns of the matrix. // // \return The number of columns of the matrix. */

Type tag

Transpose flag

Storage order of the right-hand side matrix

Operand access !\brief Returns the cross product expression containing the selection of elements. // // \return The cross product expression con

Function: esl_opt_GetInteger() * Synopsis: Retrieve value of an integer option. * * Purpose: Retrieves the configured value for option <optname

Remaining row indices

Function: esl_opt_GetBoolean() * Synopsis: Retrieve <TRUE>/<FALSE> for a boolean option. * * Purpose: Retrieves the configured TRUE/FALSE value

Size function !\brief Returns the current size/dimension of the vector. // // \return The size of the vector. */

Transpose flag of the right-hand side vector

Positive infinity type

Function: esl_opt_IsUsed() * Synopsis: Returns <TRUE> if option is on, and this is not the default. * * Purpose: Returns <TRUE> if option <optn

Type of the sparse matrix

Begin function !\brief Returns an iterator to the first non-zero element of the dense vector. // // \return Iterator to the first non-zero eleme

End function !\brief Returns an iterator just past the last non-zero element of the dense vector. // // \return Iterator just past the last non-

Density flag

Storage order of the adapted dense matrix

Type tag

Storage order of the adapted dense matrix

Row index

Writes a graph to a file. Given a filename 'path' it will open/create and truncate such file and write on it a representation of the

Function: esl_alphabet_Destroy() * Synopsis: Frees an alphabet object. * * Purpose: Free's an <ESL_ALPHABET> structure. * * Args: a - t

Function: esl_opt_GetString() * Synopsis: Retrieve value of a string option. * * Purpose: Retrieves the configured value for option <optname>

Storage order of the right-hand side matrix

Storage order of the right-hand side matrix

Compile time row arguments

Function: esl_getopts_Destroy() * Synopsis: Destroys an <ESL_GETOPTS> object. * * Purpose: Free's a created <ESL_GETOPTS> object. * * Returns

Type tag

!\brief Returns the sum of all elements in the single precision floating point SIMD vector. // \ingroup simd // // \param a The vector to be summed up

Transpose flag of the right-hand side vector

Storage order of the matrix

Transpose flag of the right-hand side vector

Compile time row arguments

Type tag

Function: esl_opt_GetReal() * Synopsis: Retrieve value of a real-valued option. * * Purpose: Retrieves the configured value for option <optname

Type of the operand

Function: esl_alphabet_Create() * Synopsis: Create alphabet of a standard type. * * Purpose: Creates one of the three standard bio alphabets:

Function: esl_rnd_Roll() * Synopsis: Generate a uniform random integer 0..n-1. * Incept: SRE, Mon 31 Jul 2023 * * Purpose: Generate a unifo

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Function: esl_msa_Destroy() * Synopsis: Frees an <ESL_MSA>. * * Purpose: Destroys <msa>. * * Xref: squid's MSADestroy(). */

Function: esl_strdup() * * Purpose: Makes a duplicate of string <s>, puts it in <ret_dup>. * Caller can pass string length <n>, if it's kn

Columns function !\brief Returns the current number of columns of the matrix. // // \return The number of columns of the matrix. */

Type of the right-hand side vector

Creates a polymorphic matcher that matches a 2-tuple where the first field == the second field.