Storage order

Compile time submatrix arguments

Compile time submatrix arguments

* @brief Finds the point with the minimal distance. */

Function: p7_ReconfigLength() * Synopsis: Set the target sequence length of a model. * * Purpose: Given a model already configured for scoring,

Function: p7_pipeline_Create() * Synopsis: Create a new accelerated comparison pipeline. * * Purpose: Given an application configuration struct

Function: parse_accept() * Synopsis: Check if the next bytes to parse match * Incept: MSF, Mon Dec 10, 2009 [Janelia] * * Purpose: Check if

size - Returns the number of bits in this bitvector.

Size function !\brief Returns the current size/dimension of the vector. // // \return The size of the vector. */

Splice members - defined in terms of transfer...

Value function !\brief Access to the current value of the sparse element. // // \return The current value of the sparse element. */

Matches a string that contains regular expression 'regex'. The matcher takes ownership of 'regex'.

Returns true if and only if the test failed.

Returns true if and only if regex matches a prefix of str. regex must be a valid simple regular expression and not start with "^", or the result is un

Generates non-fatal failures and returns false if regex is invalid; otherwise returns true.

Compares the 16 signed or unsigned 8-bit integers in a and the 16 signed or unsigned 8-bit integers in b for equality. https://msdn.microsoft.com/en-u

Subtracts the 16 unsigned 8-bit integers of b from the 16 unsigned 8-bit integers of a and saturates. r0 := UnsignedSaturate(a0 - b0) r1 := UnsignedS

Begin function !\brief Returns an iterator to the first non-zero element of row \a i. // // \param i The row index. // \return Iterator to th

Columns function !\brief Returns the current number of columns of the matrix. // // \return The number of columns of the matrix. */

count c(x) monoresidue and c(xy) diresidue composition * used for sequence shuffling unit tests * mono, di allocated by caller for 26 and 26x26, res

Function: esl_alphabet_SetEquiv() * Synopsis: Define an equivalent symbol. * * Purpose: Maps an additional input alphabetic symbol <sym> to *

Function: esl_neon_rightshift_float() * Synopsis: Shift vector elements to the right. * * Purpose: Returns a vector containing * <{

Function: esl_sq_GrowTo() * Synopsis: Grows an <ESL_SQ> to hold a seq of at least <n> residues. * Incept: SRE, Fri Jan 18 11:06:50 2008 [UA5233

Function: esl_sqfile_Position() * Synopsis: Reposition an open sequence file to an offset. * * Purpose: Reposition an open <sqfp> to offset <of

Type of the custom operation

Function: p7_trace_Dump() * Incept: SRE, Fri Jan 5 09:26:04 2007 [Janelia] * * Purpose: Dumps internals of a traceback structure <tr> to <fp

Function: p7_trace_Validate() * Incept: SRE, Fri Jan 5 09:17:24 2007 [Janelia] * * Purpose: Validate the internal data in a trace structure

Type tag

Rows function !\brief Returns the current number of rows of the matrix. // // \return The number of rows of the matrix. */

Type tag

same, but for digital seq., with alphabet size K */

Function that can free aligned memory */

Formats the given time in milliseconds as seconds.

Segment belonging to a page

Segment that contains the pointer

Normalized addition. */

Columns function !\brief Returns the current number of columns of the matrix. // // \return The number of columns of the matrix. */

Compile time row arguments

Storage order of the adapted dense matrix

Function: esl_mpi_UnpackOpt() * Synopsis: Unpack an optional, variable-sized array (or string). * Incept: SRE, Sat Jun 2 08:39:39 2007 [Janeli

Function: esl_msa_Validate() * Synopsis: Validate an ESL_MSA structure. * * Purpose: Validates the fields of the <ESL_MSA> structure *

Function: esl_sqio_EncodeFormat() * Synopsis: Convert a string to an internal format code. * * Purpose: Given <fmtstring>, return format code.

Where in the source file was the default action spec defined?

Type of the scalar factors

Type of the scalar factors

Gets the user supplied key.

Load function !\brief Access to the SIMD elements of the matrix. // // \param i Access index for the row. The index has to be in the range \f$[0

Function: p7_oprofile_Create() * Synopsis: Allocate an optimized profile structure. * Incept: ML, Fri Mar 12 11:03:02 2021 [Heidelberg] * * P

Function: p7_tophits_TabularTail() * Synopsis: Print a trailer on a tabular output file. * * Purpose: Print some metadata as a trailer on a tab

Storage order of the matrix