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github.com/ablab/spades
/ functions
Functions
40,422 in github.com/ablab/spades
⨍
Functions
40,422
◇
Types & classes
24,500
↳
Endpoints
21
↓ 32 callers
Function
transfer
ext/include/blaze/blaze/util/algorithms/Transfer.h:71
↓ 31 callers
Method
AddAlgo
src/common/assembly_graph/graph_support/parallel_processing.hpp:264
↓ 31 callers
Function
Check
Prints the message and aborts the program if condition is false.
ext/src/googletest/googletest/test/gtest_environment_test.cc:90
↓ 31 callers
Function
ExitedWithCode
ext/src/googletest/googletest/include/gtest/gtest-death-test.h:198
↓ 31 callers
Function
_mm_castsi128_ps
Applies a type cast to reinterpret four 32-bit integers passed in as a 128-bit parameter as packed 32-bit floating point values. https://msdn.microsof
ext/include/sse2neon/sse2neon.h:3235
↓ 31 callers
Method
begin
Compile time row arguments
ext/include/blaze/blaze/math/views/rows/Dense.h:692
↓ 31 callers
Method
columns
Columns function !\brief Returns the current number of columns of the matrix. // // \return The number of columns of the matrix. */
ext/include/blaze/blaze/math/expressions/DVecSVecOuterExpr.h:432
↓ 31 callers
Method
get_token
(self)
ext/src/python_libs/pyyaml3/scanner.py:132
↓ 31 callers
Function
isDefault
Density flag
ext/include/blaze/blaze/math/adaptors/UniLowerMatrix.h:271
↓ 31 callers
Function
isDefault
Density flag
ext/include/blaze/blaze/math/adaptors/UniUpperMatrix.h:271
↓ 31 callers
Method
k
src/common/alignment/edge_index.hpp:142
↓ 31 callers
Function
ks_getuntil
ext/include/samtools/kseq.h:140
↓ 31 callers
Function
rounded_d
src/common/paired_info/index_point.hpp:208
↓ 31 callers
Method
rows
Rows function !\brief Returns the current number of rows of the matrix. // // \return The number of rows of the matrix. */
ext/include/blaze/blaze/math/expressions/SVecDVecOuterExpr.h:422
↓ 31 callers
Method
set_size
Set the array size to \p N, which the current array must have enough capacity for. This does not construct or destroy any elements in the vector. Cl
ext/include/llvm/ADT/SmallVector.h:80
↓ 31 callers
Method
size
ext/include/rdsl/devector.hpp:260
↓ 31 callers
Method
size
Size function !\brief Returns the current size/dimension of the vector. // // \return The size of the vector. */
ext/include/blaze/blaze/math/expressions/DVecSVecKronExpr.h:193
↓ 31 callers
Method
size
Size function !\brief Returns the current size/dimension of the vector. // // \return The size of the vector. */
ext/include/blaze/blaze/math/expressions/DVecDVecDivExpr.h:524
↓ 31 callers
Method
size
Size function !\brief Returns the current size/dimension of the vector. // // \return The size of the vector. */
ext/include/blaze/blaze/math/expressions/DVecMapExpr.h:506
↓ 31 callers
Method
size
Size function !\brief Returns the current size/dimension of the vector. // // \return The size of the vector. */
ext/include/blaze/blaze/math/expressions/DVecDVecSubExpr.h:524
↓ 31 callers
Method
size
Size function !\brief Returns the current size/dimension of the vector. // // \return The size of the vector. */
ext/include/blaze/blaze/math/expressions/DVecDVecAddExpr.h:526
↓ 31 callers
Method
value
ext/src/googletest/googletest/test/gtest_unittest.cc:3916
↓ 31 callers
Method
write
ext/src/cppformat/posix.cc:160
↓ 30 callers
Function
Indent
ext/src/googletest/googletest/src/gtest.cc:4650
↓ 30 callers
Method
MatchAndExplain
ext/src/googletest/googlemock/include/gmock/gmock-matchers.h:1572
↓ 30 callers
Function
_mm_loadu_si128
Loads 128-bit value. : https://msdn.microsoft.com/zh-cn/library/f4k12ae8(v=vs.90).aspx
ext/include/sse2neon/sse2neon.h:4555
↓ 30 callers
Function
_mm_max_epu8
Computes the pairwise maxima of the 16 unsigned 8-bit integers from a and the 16 unsigned 8-bit integers from b. https://msdn.microsoft.com/en-us/libr
ext/include/sse2neon/sse2neon.h:4620
↓ 30 callers
Function
_mm_move_ss
Sets the low word to the single-precision, floating-point value of b https://docs.microsoft.com/en-us/previous-versions/visualstudio/visual-studio-201
ext/include/sse2neon/sse2neon.h:2104
↓ 30 callers
Function
_mm_storeu_si128
Stores 128-bits of integer data a at the address p. https://software.intel.com/sites/landingpage/IntrinsicsGuide/#text=_mm_storeu_si128
ext/include/sse2neon/sse2neon.h:5995
↓ 30 callers
Function
assign
ext/include/boost/multi_index/sequenced_index.hpp:195
↓ 30 callers
Method
begin
src/projects/mts/getopt_pp/getopt_pp.h:455
↓ 30 callers
Method
begin
Iterator routines.
src/common/paired_info/histogram.hpp:65
↓ 30 callers
Method
begin
ext/include/llvm/ADT/STLExtras.h:720
↓ 30 callers
Method
c_str
ext/include/cppformat/format.h:584
↓ 30 callers
Method
cbegin
src/common/adt/flat_map.hpp:57
↓ 30 callers
Method
chunk_cnt
src/common/stages/simplification_pipeline/simplification_settings.hpp:77
↓ 30 callers
Method
columns
Columns function !\brief Returns the current number of columns of the matrix. // // \return The number of columns of the matrix. */
ext/include/blaze/blaze/math/expressions/SMatDMatSubExpr.h:222
↓ 30 callers
Method
columns
Columns function !\brief Returns the current number of columns of the matrix. // // \return The number of columns of the matrix. */
ext/include/blaze/blaze/math/expressions/DMatTSMatSubExpr.h:224
↓ 30 callers
Method
columns
Columns function !\brief Returns the current number of columns of the matrix. // // \return The number of columns of the matrix. */
ext/include/blaze/blaze/math/expressions/DMatSMatSubExpr.h:223
↓ 30 callers
Method
columns
Columns function !\brief Returns the current number of columns of the matrix. // // \return The number of columns of the matrix. */
ext/include/blaze/blaze/math/expressions/SMatTDMatSubExpr.h:223
↓ 30 callers
Method
columns
Columns function !\brief Returns the current number of columns of the matrix. // // \return The number of columns of the matrix. */
ext/include/blaze/blaze/math/expressions/SVecSVecOuterExpr.h:214
↓ 30 callers
Method
columns
Columns function !\brief Returns the current number of columns of the matrix. // // \return The number of columns of the matrix. */
ext/include/blaze/blaze/math/expressions/TDMatSMatSubExpr.h:224
↓ 30 callers
Method
columns
Columns function !\brief Returns the current number of columns of the matrix. // // \return The number of columns of the matrix. */
ext/include/blaze/blaze/math/expressions/TSMatDMatSubExpr.h:223
↓ 30 callers
Method
create
Creates and returns a Postscript representation of the graph. create will write the graph to a temporary dot file and process it with
src/tools/webvis/pydot.py:1925
↓ 30 callers
Method
data
src/projects/hammer/kmer_stat.hpp:112
↓ 30 callers
Method
empty
ext/include/llvm/Support/JSON.h:185
↓ 30 callers
Method
enumCase
ext/include/llvm/Support/YAMLTraits.h:796
↓ 30 callers
Function
esl_rnd_UniformPositive
Function: esl_rnd_UniformPositive() * Synopsis: Generate a uniform positive random deviate on interval (0,1). * * Purpose: Same as <esl_random()>,
ext/src/easel/esl_random.c:482
↓ 30 callers
Function
get
Returns a reference to the value if this is initialized, otherwise, the behaviour is UNDEFINED No-throw
ext/include/boost/optional/optional.hpp:1270
↓ 30 callers
Method
index
Type of the adapted matrix
ext/include/blaze/blaze/math/adaptors/symmetricmatrix/SymmetricElement.h:361
↓ 30 callers
Function
isHermitian
Compile time submatrix arguments
ext/include/blaze/blaze/math/views/Submatrix.h:2931
↓ 30 callers
Function
join
src/common/utils/stl_utils.hpp:92
↓ 30 callers
Method
load
src/common/pipeline/stage.cpp:27
↓ 30 callers
Function
loadbuf
loadbuf() * Set sqfp->buf to contain next line of data, or point to next block. * This might just mean working with previously buffered memory in <s
ext/src/easel/esl_sqio_ascii.c:2116
↓ 30 callers
Function
n
()
src/tools/webvis/static/sigma.min.js:2
↓ 30 callers
Function
regnode
- regnode - emit a node */
ext/src/easel/esl_regexp.c:1040
↓ 30 callers
Function
reverse
ext/include/llvm/ADT/STLExtras.h:340
↓ 30 callers
Method
rows
Rows function !\brief Returns the current number of rows of the matrix. // // \return The number of rows of the matrix. */
ext/include/blaze/blaze/math/expressions/SMatDMatSubExpr.h:212
↓ 30 callers
Method
rows
Rows function !\brief Returns the current number of rows of the matrix. // // \return The number of rows of the matrix. */
ext/include/blaze/blaze/math/expressions/DMatTSMatSubExpr.h:214
↓ 30 callers
Method
rows
Rows function !\brief Returns the current number of rows of the matrix. // // \return The number of rows of the matrix. */
ext/include/blaze/blaze/math/expressions/DMatSMatSubExpr.h:213
↓ 30 callers
Method
rows
Rows function !\brief Returns the current number of rows of the matrix. // // \return The number of rows of the matrix. */
ext/include/blaze/blaze/math/expressions/SMatTDMatSubExpr.h:213
↓ 30 callers
Method
rows
Rows function !\brief Returns the current number of rows of the matrix. // // \return The number of rows of the matrix. */
ext/include/blaze/blaze/math/expressions/SVecSVecOuterExpr.h:204
↓ 30 callers
Method
rows
Rows function !\brief Returns the current number of rows of the matrix. // // \return The number of rows of the matrix. */
ext/include/blaze/blaze/math/expressions/TDMatSMatSubExpr.h:214
↓ 30 callers
Method
rows
Rows function !\brief Returns the current number of rows of the matrix. // // \return The number of rows of the matrix. */
ext/include/blaze/blaze/math/expressions/TSMatDMatSubExpr.h:213
↓ 30 callers
Method
size
Size function !\brief Returns the current size/dimension of the vector. // // \return The size of the vector. */
ext/include/blaze/blaze/math/expressions/SMatVarExpr.h:917
↓ 30 callers
Method
size
Size function !\brief Returns the current size/dimension of the vector. // // \return The size of the vector. */
ext/include/blaze/blaze/math/expressions/DVecDVecKronExpr.h:193
↓ 30 callers
Method
write_indicator
(self, indicator, need_whitespace, whitespace=False, indention=False)
ext/src/python_libs/pyyaml3/emitter.py:799
↓ 29 callers
Function
Align
Default is byte-aligned.
ext/include/llvm/Support/Alignment.h:70
↓ 29 callers
Function
AllOfArray
ext/src/googletest/googlemock/include/gmock/gmock-matchers.h:5427
↓ 29 callers
Function
FieldsAre
ext/src/googletest/googlemock/include/gmock/gmock-matchers.h:5288
↓ 29 callers
Method
IsInterested
Returns true if and only if the listener is interested in an explanation of the match result. A matcher's MatchAndExplain() method can use this infor
ext/src/googletest/googletest/include/gtest/gtest-matchers.h:101
↓ 29 callers
Method
SubPath
src/common/assembly_graph/paths/bidirectional_path.hpp:655
↓ 29 callers
Function
WideStringToUtf8
Converts a wide string to a narrow string in UTF-8 encoding. The wide string is assumed to have the following encoding: UTF-16 if sizeof(wchar_t) == 2
ext/src/googletest/googletest/src/gtest.cc:2108
↓ 29 callers
Function
_mm_add_pd
Add packed double-precision (64-bit) floating-point elements in a and b, and store the results in dst. https://software.intel.com/sites/landingpage/In
ext/include/sse2neon/sse2neon.h:2996
↓ 29 callers
Function
_mm_load_pd
Loads two double-precision from 16-byte aligned memory, floating-point values. dst[127:0] := MEM[mem_addr+127:mem_addr] https://software.intel.com/s
ext/include/sse2neon/sse2neon.h:4415
↓ 29 callers
Method
add_writer
src/common/utils/logger/logger.hpp:103
↓ 29 callers
Method
begin
ext/include/llvm/ADT/SparseBitVector.h:809
↓ 29 callers
Method
encode
ext/include/radix_heap/radix_heap.h:76
↓ 29 callers
Method
end
src/projects/mts/getopt_pp/getopt_pp.h:460
↓ 29 callers
Method
end
ext/include/parallel_hashmap/phmap.h:266
↓ 29 callers
Method
erase
ext/include/llvm/Support/JSON.h:556
↓ 29 callers
Function
esl_msafile_ReadFailure
Function: esl_msafile_ReadFailure() * Synopsis: Report diagnostics of a normal error in parsing MSA file, and exit. * * Purpose: Report user-di
ext/src/easel/esl_msafile.c:1044
↓ 29 callers
Function
esl_rand64
Function: esl_rand64() * Synopsis: Generate a random number on [0,2^{64}-1] * Incept: SRE, Tue 21 Aug 2018 [Hans Zimmer, Inception, We Built Ou
ext/src/easel/esl_rand64.c:174
↓ 29 callers
Function
esl_sqfile_GetErrorBuf
Function: esl_sqfile_GetErrorBuf() * Synopsis: Return the error buffer * * Purpose: Returns the pointer to the error buffer. * Each
ext/src/easel/esl_sqio.c:659
↓ 29 callers
Function
esl_vec_FCompare
ext/src/easel/esl_vectorops.c:975
↓ 29 callers
Function
find_if
ext/include/llvm/ADT/STLExtras.h:1500
↓ 29 callers
Function
frexp
Equivalent of C standard library function. While the C standard says Exp is an unspecified value for infinity and nan, this returns INT_MAX for infin
ext/include/llvm/ADT/APFloat.h:1256
↓ 29 callers
Function
impl
Accessors for the implementation object.
ext/src/googletest/googletest/include/gtest/gtest.h:1280
↓ 29 callers
Function
is_separator
ext/src/llvm/Path.cpp:592
↓ 29 callers
Method
k
src/common/assembly_graph/core/graph.hpp:225
↓ 29 callers
Function
next
ext/src/lexy/include/lexy/_detail/iterator.hpp:38
↓ 29 callers
Function
p7_Die
Function: p7_Die() * Synopsis: Handle a fatal exception (something that's our fault) * Incept: SRE, Fri Jan 12 08:54:45 2007 [Janelia] */
ext/src/hmmer/src/errors.c:25
↓ 29 callers
Function
p7_banner
Function: p7_banner() * Synopsis: print standard HMMER application output header * Incept: SRE, Wed May 23 10:45:53 2007 [Janelia] * * Purpos
ext/src/hmmer/src/hmmer.c:63
↓ 29 callers
Function
p7_hmm_Sample
Function: p7_hmm_Sample() * Synopsis: Sample an HMM at random. * * Purpose: Creates a random HMM of length <M> nodes, * for alphabe
ext/src/hmmer/src/p7_hmm.c:943
↓ 29 callers
Method
peek
ext/src/lexy/include/lexy/dsl/case_folding.hpp:89
↓ 29 callers
Method
pop
src/common/adt/loser_tree.hpp:176
↓ 29 callers
Method
pushFront
src/common/sequence/seq.hpp:305
↓ 29 callers
Method
push_back
src/common/io/reads/read_stream_vector.hpp:69
↓ 29 callers
Function
sign
ext/include/blaze/blaze/math/shims/Sign.h:67
↓ 29 callers
Method
size
Type tag
ext/include/blaze/blaze/math/dense/DynamicVector.h:1611
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