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Functions679 in github.com/HUPO-PSI/mzML

⨍ Functions 679◇ Types & classes 91
MethodgetArrayLength
Gets the value of the arrayLength property. @return possible object is {@link BigInteger }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/BinaryDataArrayType.java:170
MethodgetComponentList
Gets the value of the componentList property. @return possible object is {@link ComponentListType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/InstrumentType.java:144
MethodgetCount
()
validator/src/main/java/psidev/psi/ms/MzMLValidator.java:1124
MethodgetCount
Gets the value of the count property. @return possible object is {@link BigInteger }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/SpectrumListType.java:160
MethodgetCount
Gets the value of the count property. @return possible object is {@link BigInteger }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/SoftwareListType.java:183
MethodgetCount
Gets the value of the count property. @return possible object is {@link BigInteger }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/SourceFileListType.java:161
MethodgetCount
Gets the value of the count property. @return possible object is {@link BigInteger }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/RunType.java:465
MethodgetCount
Gets the value of the count property. @return possible object is {@link BigInteger }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/PrecursorListType.java:160
MethodgetCount
Gets the value of the count property. @return possible object is {@link BigInteger }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/SampleListType.java:161
MethodgetCount
Gets the value of the count property. @return possible object is {@link BigInteger }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/InstrumentListType.java:161
MethodgetCount
Gets the value of the count property. @return possible object is {@link BigInteger }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/CVListType.java:161
MethodgetCount
Gets the value of the count property.
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/SpectrumDescriptionType.java:517
MethodgetCount
Gets the value of the count property. @return possible object is {@link BigInteger }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/AcquisitionListType.java:176
MethodgetCount
Gets the value of the count property. @return possible object is {@link BigInteger }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/DataProcessingListType.java:161
MethodgetCount
Gets the value of the count property. @return possible object is {@link BigInteger }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ComponentListType.java:175
MethodgetCount
Gets the value of the count property. @return possible object is {@link BigInteger }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ReferenceableParamGroupListType.java:161
MethodgetCvLabel
Gets the value of the cvLabel property. @return possible object is {@link String }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/CVType.java:161
MethodgetCvLabel
Gets the value of the cvLabel property. @return possible object is {@link String }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/SoftwareListType.java:491
MethodgetCvLabel
Gets the value of the cvLabel property. @return possible object is {@link String }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/CVParamType.java:179
MethodgetCvList
Gets the value of the cvList property. @return possible object is {@link CVListType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/MzMLType.java:244
MethodgetCvMappingRuleToSkip
Gets the value of the cvMappingRuleToSkip property. <p> This accessor method returns a reference to the live list, not a snapshot. Therefore any modi
validator/src/main/java/psidev/psi/ms/rulefilter/jaxb/ReferencedRules.java:78
MethodgetCvMappingRuleToSkip
Gets the value of the cvMappingRuleToSkip property. <p> This accessor method returns a reference to the live list, not a snapshot. Therefore any modi
validator/src/main/java/psidev/psi/ms/rulefilter/jaxb/CvMappingRuleCondition.java:108
MethodgetCvMappingRuleToSkip
Gets the value of the cvMappingRuleToSkip property. <p> This accessor method returns a reference to the live list, not a snapshot. Therefore any modi
validator/src/main/java/psidev/psi/ms/rulefilter/jaxb/ObjectRuleCondition.java:108
MethodgetCvRuleById
(String ruleId, Collection<CvRule> rules)
validator/src/main/java/psidev/psi/ms/ExtendedValidatorReport.java:146
MethodgetDataProcessingList
Gets the value of the dataProcessingList property. @return possible object is {@link DataProcessingListType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/MzMLType.java:364
MethodgetDataProcessingRef
Gets the value of the dataProcessingRef property. @return possible object is {@link String }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/SpectrumType.java:222
MethodgetDataProcessingRef
Gets the value of the dataProcessingRef property. @return possible object is {@link String }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/BinaryDataArrayType.java:195
MethodgetDescription
()
validator/src/main/java/psidev/psi/ms/MzMLValidatorGUI.java:831
MethodgetEncodedLength
Gets the value of the encodedLength property. @return possible object is {@link BigInteger }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/BinaryDataArrayType.java:220
MethodgetFileContent
Gets the value of the fileContent property. @return possible object is {@link ParamGroupType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/FileDescriptionType.java:146
MethodgetFileDescription
Gets the value of the fileDescription property. @return possible object is {@link FileDescriptionType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/MzMLType.java:220
MethodgetFilter
()
validator/src/main/java/psidev/psi/ms/rulefilter/RuleFilterManager.java:62
MethodgetFullName
Gets the value of the fullName property. @return possible object is {@link String }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/CVType.java:185
MethodgetHowToFixTips
()
validator/src/main/java/psidev/psi/ms/object_rules/OtherSourceObjectRule.java:89
MethodgetHowToFixTips
()
validator/src/main/java/psidev/psi/ms/object_rules/MassSpectraOrParameterFileInSourceFileListObjectRule.java:132
MethodgetHowToFixTips
()
validator/src/main/java/psidev/psi/ms/object_rules/ParameterFileInSourceFileListObjectRule.java:80
MethodgetHowToFixTips
()
validator/src/main/java/psidev/psi/ms/object_rules/MatrixSolutionObjectRule.java:63
MethodgetHowToFixTips
()
validator/src/main/java/psidev/psi/ms/object_rules/AcquisitionParametersFileRefObjectRule.java:77
MethodgetHowToFixTips
()
validator/src/main/java/psidev/psi/ms/object_rules/LaserWavelengthObjectRule.java:62
MethodgetHowToFixTips
()
validator/src/main/java/psidev/psi/ms/object_rules/InstrumentConfigurationObjectRule.java:123
MethodgetHowToFixTips
()
validator/src/main/java/psidev/psi/ms/object_rules/SoftwareListObjectRule.java:94
MethodgetHowToFixTips
()
validator/src/main/java/psidev/psi/ms/object_rules/ExplicitAcquisitionParametersObjectRule.java:90
MethodgetId
Gets the value of the id property. @return possible object is {@link String }
validator/src/main/java/psidev/psi/ms/rulefilter/jaxb/CvMappingRuleToSkip.java:51
MethodgetId
Gets the value of the id property. @return possible object is {@link String }
validator/src/main/java/psidev/psi/ms/rulefilter/jaxb/ReferencedRules.java:122
MethodgetId
Gets the value of the id property. @return possible object is {@link String }
validator/src/main/java/psidev/psi/ms/rulefilter/jaxb/ObjectRuleToSkip.java:51
MethodgetId
Gets the value of the id property. @return possible object is {@link String }
validator/src/main/java/psidev/psi/ms/rulefilter/jaxb/CvMappingRuleCondition.java:123
MethodgetId
Gets the value of the id property. @return possible object is {@link String }
validator/src/main/java/psidev/psi/ms/rulefilter/jaxb/ObjectRuleCondition.java:123
MethodgetId
Gets the value of the id property. @return possible object is {@link String }
validator/src/main/java/psidev/psi/ms/rulefilter/jaxb/UserCondition.java:90
MethodgetId
Gets the value of the id property. @return possible object is {@link String }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/SoftwareListType.java:340
MethodgetId
Gets the value of the id property. @return possible object is {@link String }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/SpectrumType.java:246
MethodgetId
Gets the value of the id property. @return possible object is {@link String }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/SourceFileType.java:150
MethodgetId
Gets the value of the id property. @return possible object is {@link String }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/MzMLType.java:436
MethodgetId
Gets the value of the id property. @return possible object is {@link String }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/InstrumentType.java:192
MethodgetId
Gets the value of the id property. @return possible object is {@link String }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/DataProcessingType.java:176
MethodgetId
Gets the value of the id property. @return possible object is {@link String }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ReferenceableParamGroupType.java:122
MethodgetId
Gets the value of the id property. @return possible object is {@link String }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/SampleType.java:126
MethodgetId
()
validator/src/main/java/psidev/psi/ms/object_rules/OtherSourceObjectRule.java:99
MethodgetId
()
validator/src/main/java/psidev/psi/ms/object_rules/MandatoryElementsObjectRule.java:39
MethodgetId
()
validator/src/main/java/psidev/psi/ms/object_rules/ParameterFileInSourceFileListObjectRule.java:89
MethodgetId
()
validator/src/main/java/psidev/psi/ms/object_rules/MatrixSolutionObjectRule.java:73
MethodgetId
()
validator/src/main/java/psidev/psi/ms/object_rules/AcquisitionParametersFileRefObjectRule.java:86
MethodgetId
()
validator/src/main/java/psidev/psi/ms/object_rules/SpectrumObjectRule.java:248
MethodgetId
()
validator/src/main/java/psidev/psi/ms/object_rules/LaserWavelengthObjectRule.java:72
MethodgetId
()
validator/src/main/java/psidev/psi/ms/object_rules/TemplateObjectRule.java:41
MethodgetId
()
validator/src/main/java/psidev/psi/ms/object_rules/SoftwareListObjectRule.java:106
MethodgetId
()
validator/src/main/java/psidev/psi/ms/object_rules/ExplicitAcquisitionParametersObjectRule.java:100
MethodgetInstrumentList
Gets the value of the instrumentList property. @return possible object is {@link InstrumentListType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/MzMLType.java:316
MethodgetInstrumentRef
Gets the value of the instrumentRef property. @return possible object is {@link String }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/RunType.java:262
MethodgetInstrumentRef
Gets the value of the instrumentRef property. @return possible object is {@link String }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ScanType.java:66
MethodgetInstrumentSoftwareRef
Gets the value of the instrumentSoftwareRef property. @return possible object is {@link InstrumentSoftwareRefType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/InstrumentType.java:168
MethodgetIonSelection
Gets the value of the ionSelection property. @return possible object is {@link ParamGroupType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/PrecursorType.java:144
MethodgetMessages
()
validator/src/main/java/psidev/psi/ms/MzMLValidator.java:1120
MethodgetMethodOfCombination
Gets the value of the methodOfCombination property. @return possible object is {@link String }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/AcquisitionListType.java:200
MethodgetMsLevel
Gets the value of the msLevel property.
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/SpectrumType.java:266
MethodgetName
Gets the value of the name property. @return possible object is {@link String }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/SoftwareListType.java:515
MethodgetName
Gets the value of the name property. @return possible object is {@link String }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/CVParamType.java:203
MethodgetName
Gets the value of the name property. @return possible object is {@link String }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/UserParamType.java:130
MethodgetObjectRuleToSkip
Gets the value of the objectRuleToSkip property. <p> This accessor method returns a reference to the live list, not a snapshot. Therefore any modific
validator/src/main/java/psidev/psi/ms/rulefilter/jaxb/ReferencedRules.java:107
MethodgetObjectRuleToSkip
Gets the value of the objectRuleToSkip property. <p> This accessor method returns a reference to the live list, not a snapshot. Therefore any modific
validator/src/main/java/psidev/psi/ms/rulefilter/jaxb/CvMappingRuleCondition.java:79
MethodgetObjectRuleToSkip
Gets the value of the objectRuleToSkip property. <p> This accessor method returns a reference to the live list, not a snapshot. Therefore any modific
validator/src/main/java/psidev/psi/ms/rulefilter/jaxb/ObjectRuleCondition.java:79
MethodgetOrder
Gets the value of the order property.
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ComponentType.java:121
MethodgetOrder
Gets the value of the order property. @return possible object is {@link BigInteger }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/DataProcessingType.java:309
MethodgetParamGroupRef
Gets the value of the paramGroupRef property. <p> This accessor method returns a reference to the live list, not a snapshot. Therefore any modificati
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ParamGroupType.java:176
MethodgetRef
Gets the value of the ref property. @return possible object is {@link String }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/RunType.java:571
MethodgetRef
Gets the value of the ref property. @return possible object is {@link String }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/InstrumentSoftwareRefType.java:114
MethodgetRef
Gets the value of the ref property. @return possible object is {@link String }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ParamGroupRefType.java:166
MethodgetReferenceableParamGroupList
Gets the value of the referenceableParamGroupList property. @return possible object is {@link ReferenceableParamGroupListType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/MzMLType.java:268
MethodgetRequiredAccessionsFromOntology
()
validator/src/main/java/psidev/psi/ms/object_rules/OtherSourceObjectRule.java:103
MethodgetRun
Gets the value of the run property. @return possible object is {@link RunType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/MzMLType.java:388
MethodgetSampleList
Gets the value of the sampleList property. @return possible object is {@link SampleListType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/MzMLType.java:292
MethodgetSampleRef
Gets the value of the sampleRef property. @return possible object is {@link String }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/RunType.java:286
MethodgetScan
Gets the value of the scan property. @return possible object is {@link SpectrumDescriptionType.Scan }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/SpectrumDescriptionType.java:222
MethodgetScanNumber
Gets the value of the scanNumber property.
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/SpectrumType.java:282
MethodgetSchema
()
validator/src/main/java/psidev/psi/ms/MzMLSchemaValidator.java:84
MethodgetSchemaUri
Get the currently specified schema URI instance files are validated against. @return the URI pointing to the mzML schema.
validator/src/main/java/psidev/psi/ms/MzMLValidator.java:182
MethodgetSelectedOptions
gets the selected options chosen by the user regarding the exclusion of CV mapping rules and object rules @return a hashMap in which the key is the i
validator/src/main/java/psidev/psi/ms/rulefilter/RuleFilterAgent.java:25
MethodgetSelectionWindowList
Gets the value of the selectionWindowList property. @return possible object is {@link SpectrumDescriptionType.Scan.SelectionWindowList }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/SpectrumDescriptionType.java:364
MethodgetSoftwareList
Gets the value of the softwareList property. @return possible object is {@link SoftwareListType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/MzMLType.java:340
MethodgetSoftwareParam
Gets the value of the softwareParam property. @return possible object is {@link SoftwareListType.Software.SoftwareParam }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/SoftwareListType.java:316
MethodgetSoftwareRef
Gets the value of the softwareRef property. @return possible object is {@link String }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/DataProcessingType.java:200
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