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Functions679 in github.com/HUPO-PSI/mzML

Methodaccept
(File f)
validator/src/main/java/psidev/psi/ms/MzMLValidatorGUI.java:822
Methodaccept
(File dir, String name)
validator/src/main/java/psidev/psi/ms/MzMLSchemaValidator.java:149
MethodactionPerformed
(java.awt.event.ActionEvent evt)
validator/src/main/java/psidev/psi/ms/MzMLValidatorGUI.java:102
MethodaddCvMappingRuleToSkip
Add a CvRule to the collection of cv mapping rules to skip @param cvMappingRule
validator/src/main/java/psidev/psi/ms/rulefilter/RuleFilterManager.java:325
MethodaddObjectRule
Add a new object rule to the list of object rules only if it is not already in the list @param rule @return true if has been added or false if not
validator/src/main/java/psidev/psi/ms/MzMLValidator.java:993
MethodaddObjectRuleToSkip
Add an object rule to the collection of object rules to skip @param objectRule
validator/src/main/java/psidev/psi/ms/rulefilter/RuleFilterManager.java:334
MethodcanCheck
(Object o)
validator/src/main/java/psidev/psi/ms/object_rules/OtherSourceObjectRule.java:54
MethodcanCheck
(Object o)
validator/src/main/java/psidev/psi/ms/object_rules/MassSpectraOrParameterFileInSourceFileListObjectRule.java:55
MethodcanCheck
(Object t)
validator/src/main/java/psidev/psi/ms/object_rules/MandatoryElementsObjectRule.java:29
MethodcanCheck
(Object o)
validator/src/main/java/psidev/psi/ms/object_rules/ParameterFileInSourceFileListObjectRule.java:49
MethodcanCheck
(Object o)
validator/src/main/java/psidev/psi/ms/object_rules/MatrixSolutionObjectRule.java:44
MethodcanCheck
(Object o)
validator/src/main/java/psidev/psi/ms/object_rules/AcquisitionParametersFileRefObjectRule.java:46
MethodcanCheck
(Object o)
validator/src/main/java/psidev/psi/ms/object_rules/LaserWavelengthObjectRule.java:43
MethodcanCheck
(Object o)
validator/src/main/java/psidev/psi/ms/object_rules/TemplateObjectRule.java:31
MethodcanCheck
(Object o)
validator/src/main/java/psidev/psi/ms/object_rules/InstrumentConfigurationObjectRule.java:58
MethodcanCheck
(Object o)
validator/src/main/java/psidev/psi/ms/object_rules/SoftwareListObjectRule.java:57
MethodcanCheck
(Object o)
validator/src/main/java/psidev/psi/ms/object_rules/ExplicitAcquisitionParametersObjectRule.java:58
Methodcheck
(SourceComponent sourceComponent)
validator/src/main/java/psidev/psi/ms/object_rules/OtherSourceObjectRule.java:58
Methodcheck
(SourceFileList sourceFileList)
validator/src/main/java/psidev/psi/ms/object_rules/MassSpectraOrParameterFileInSourceFileListObjectRule.java:59
Methodcheck
(Object o)
validator/src/main/java/psidev/psi/ms/object_rules/MandatoryElementsObjectRule.java:34
Methodcheck
(SourceFileList sourceFileList)
validator/src/main/java/psidev/psi/ms/object_rules/ParameterFileInSourceFileListObjectRule.java:53
Methodcheck
(SourceComponent sourceComponent)
validator/src/main/java/psidev/psi/ms/object_rules/MatrixSolutionObjectRule.java:48
Methodcheck
(ScanSettings scanSettings)
validator/src/main/java/psidev/psi/ms/object_rules/AcquisitionParametersFileRefObjectRule.java:50
Methodcheck
(SourceComponent sourceComponent)
validator/src/main/java/psidev/psi/ms/object_rules/LaserWavelengthObjectRule.java:47
Methodcheck
(Object o)
validator/src/main/java/psidev/psi/ms/object_rules/TemplateObjectRule.java:36
Methodcheck
(InstrumentConfiguration instrumentConfiguration)
validator/src/main/java/psidev/psi/ms/object_rules/InstrumentConfigurationObjectRule.java:62
Methodcheck
(SoftwareList softwareList)
validator/src/main/java/psidev/psi/ms/object_rules/SoftwareListObjectRule.java:61
Methodcheck
(SoftwareList softwareList)
validator/src/main/java/psidev/psi/ms/object_rules/ExplicitAcquisitionParametersObjectRule.java:62
MethodclearObjectRules
()
validator/src/main/java/psidev/psi/ms/ExtendedValidatorReport.java:94
Methodconstruct
()
validator/src/main/java/psidev/psi/ms/MzMLValidatorGUI.java:491
Methodcreate
(Node node)
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ScanType.java:50
MethodcreateAcquisitionListType
Create an instance of {@link AcquisitionListType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:82
MethodcreateAcquisitionType
Create an instance of {@link AcquisitionType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:194
MethodcreateBinaryDataArrayType
Create an instance of {@link BinaryDataArrayType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:330
MethodcreateCVListType
Create an instance of {@link CVListType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:106
MethodcreateCVParamType
Create an instance of {@link CVParamType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:122
MethodcreateCVType
Create an instance of {@link CVType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:202
MethodcreateComponentListType
Create an instance of {@link ComponentListType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:154
MethodcreateComponentListTypeAnalyzer
Create an instance of {@link JAXBElement }{@code <}{@link ComponentType }{@code >}}
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:412
MethodcreateComponentListTypeDetector
Create an instance of {@link JAXBElement }{@code <}{@link ComponentType }{@code >}}
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:421
MethodcreateComponentListTypeSource
Create an instance of {@link JAXBElement }{@code <}{@link ComponentType }{@code >}}
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:403
MethodcreateComponentType
Create an instance of {@link ComponentType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:130
MethodcreateContactType
Create an instance of {@link ContactType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:322
MethodcreateCvMappingRuleCondition
Create an instance of {@link CvMappingRuleCondition }
validator/src/main/java/psidev/psi/ms/rulefilter/jaxb/ObjectFactory.java:75
MethodcreateCvMappingRuleConditions
Create an instance of {@link CvMappingRuleConditions }
validator/src/main/java/psidev/psi/ms/rulefilter/jaxb/ObjectFactory.java:139
MethodcreateCvMappingRuleToSkip
Create an instance of {@link CvMappingRuleToSkip }
validator/src/main/java/psidev/psi/ms/rulefilter/jaxb/ObjectFactory.java:91
MethodcreateDataProcessingListType
Create an instance of {@link DataProcessingListType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:306
MethodcreateDataProcessingType
Create an instance of {@link DataProcessingType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:170
MethodcreateDataProcessingTypeProcessingMethod
Create an instance of {@link DataProcessingType.ProcessingMethod }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:90
MethodcreateFileChecksumType
Create an instance of {@link FileChecksumType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:274
MethodcreateFileDescriptionType
Create an instance of {@link FileDescriptionType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:178
MethodcreateInstrumentListType
Create an instance of {@link InstrumentListType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:98
MethodcreateInstrumentSoftwareRefType
Create an instance of {@link InstrumentSoftwareRefType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:58
MethodcreateInstrumentType
Create an instance of {@link InstrumentType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:378
MethodcreateMandatoryElements
Create an instance of {@link MandatoryElements }
validator/src/main/java/psidev/psi/ms/rulefilter/jaxb/ObjectFactory.java:131
MethodcreateMandatoryMzIdentMLElement
Create an instance of {@link MandatoryMzIdentMLElement }
validator/src/main/java/psidev/psi/ms/rulefilter/jaxb/ObjectFactory.java:83
MethodcreateMandatoryMzMLElement
Create an instance of {@link MandatoryMzMLElement }
validator/src/main/java/psidev/psi/ms/rulefilter/jaxb/ObjectFactory.java:155
MethodcreateMzML
Create an instance of {@link JAXBElement }{@code <}{@link MzMLType }{@code >}}
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:394
MethodcreateMzMLType
Create an instance of {@link MzMLType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:210
MethodcreateObjectRuleCondition
Create an instance of {@link ObjectRuleCondition }
validator/src/main/java/psidev/psi/ms/rulefilter/jaxb/ObjectFactory.java:107
MethodcreateObjectRuleConditions
Create an instance of {@link ObjectRuleConditions }
validator/src/main/java/psidev/psi/ms/rulefilter/jaxb/ObjectFactory.java:115
MethodcreateObjectRuleToSkip
Create an instance of {@link ObjectRuleToSkip }
validator/src/main/java/psidev/psi/ms/rulefilter/jaxb/ObjectFactory.java:67
MethodcreateParamGroupRefType
Create an instance of {@link ParamGroupRefType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:114
MethodcreateParamGroupType
Create an instance of {@link ParamGroupType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:370
MethodcreatePrecursorListType
Create an instance of {@link PrecursorListType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:298
MethodcreatePrecursorType
Create an instance of {@link PrecursorType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:314
MethodcreateReferenceableParamGroupListType
Create an instance of {@link ReferenceableParamGroupListType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:138
MethodcreateReferenceableParamGroupType
Create an instance of {@link ReferenceableParamGroupType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:162
MethodcreateReferencedRules
Create an instance of {@link ReferencedRules }
validator/src/main/java/psidev/psi/ms/rulefilter/jaxb/ObjectFactory.java:163
MethodcreateReferences
Create an instance of {@link References }
validator/src/main/java/psidev/psi/ms/rulefilter/jaxb/ObjectFactory.java:147
MethodcreateRuleFilter
Create an instance of {@link RuleFilter }
validator/src/main/java/psidev/psi/ms/rulefilter/jaxb/ObjectFactory.java:99
MethodcreateRulesToSkipRef
Create an instance of {@link RulesToSkipRef }
validator/src/main/java/psidev/psi/ms/rulefilter/jaxb/ObjectFactory.java:59
MethodcreateRunType
Create an instance of {@link RunType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:338
MethodcreateRunTypeSourceFileRefList
Create an instance of {@link RunType.SourceFileRefList }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:354
MethodcreateRunTypeSourceFileRefListSourceFileRef
Create an instance of {@link RunType.SourceFileRefList.SourceFileRef }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:50
MethodcreateSampleListType
Create an instance of {@link SampleListType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:234
MethodcreateSampleType
Create an instance of {@link SampleType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:74
MethodcreateScanType
Create an instance of {@link ScanType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:242
MethodcreateSoftwareListType
Create an instance of {@link SoftwareListType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:386
MethodcreateSoftwareListTypeSoftware
Create an instance of {@link SoftwareListType.Software }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:250
MethodcreateSoftwareListTypeSoftwareSoftwareParam
Create an instance of {@link SoftwareListType.Software.SoftwareParam }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:266
MethodcreateSoftwareType
Create an instance of {@link SoftwareType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:186
MethodcreateSourceFileListType
Create an instance of {@link SourceFileListType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:258
MethodcreateSourceFileType
Create an instance of {@link SourceFileType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:146
MethodcreateSpectrumDescriptionType
Create an instance of {@link SpectrumDescriptionType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:290
MethodcreateSpectrumDescriptionTypeScan
Create an instance of {@link SpectrumDescriptionType.Scan }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:218
MethodcreateSpectrumDescriptionTypeScanSelectionWindowList
Create an instance of {@link SpectrumDescriptionType.Scan.SelectionWindowList }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:66
MethodcreateSpectrumDescriptionTypeScanSelectionWindowListSelectionWindow
Create an instance of {@link SpectrumDescriptionType.Scan.SelectionWindowList.SelectionWindow }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:362
MethodcreateSpectrumListType
Create an instance of {@link SpectrumListType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:282
MethodcreateSpectrumType
Create an instance of {@link SpectrumType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:226
MethodcreateUserCondition
Create an instance of {@link UserCondition }
validator/src/main/java/psidev/psi/ms/rulefilter/jaxb/ObjectFactory.java:123
MethodcreateUserConditions
Create an instance of {@link UserConditions }
validator/src/main/java/psidev/psi/ms/rulefilter/jaxb/ObjectFactory.java:43
MethodcreateUserOption
Create an instance of {@link UserOption }
validator/src/main/java/psidev/psi/ms/rulefilter/jaxb/ObjectFactory.java:51
MethodcreateUserParamType
Create an instance of {@link UserParamType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:346
Methodfinished
()
validator/src/main/java/psidev/psi/ms/MzMLValidatorGUI.java:547
Methodget
()
validator/src/main/java/psidev/psi/ms/swingworker/SwingWorker.java:40
MethodgetAccession
Gets the value of the accession property. @return possible object is {@link String }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/SoftwareListType.java:467
MethodgetAccession
Gets the value of the accession property. @return possible object is {@link String }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/CVParamType.java:155
MethodgetAcqNumber
Gets the value of the acqNumber property.
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/AcquisitionType.java:129
MethodgetAcquisitionList
Gets the value of the acquisitionList property. @return possible object is {@link AcquisitionListType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/SpectrumDescriptionType.java:174
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