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github.com/HUPO-PSI/mzML
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Functions
679 in github.com/HUPO-PSI/mzML
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Functions
679
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Types & classes
91
Method
accept
(File f)
validator/src/main/java/psidev/psi/ms/MzMLValidatorGUI.java:822
Method
accept
(File dir, String name)
validator/src/main/java/psidev/psi/ms/MzMLSchemaValidator.java:149
Method
actionPerformed
(java.awt.event.ActionEvent evt)
validator/src/main/java/psidev/psi/ms/MzMLValidatorGUI.java:102
Method
addCvMappingRuleToSkip
Add a CvRule to the collection of cv mapping rules to skip @param cvMappingRule
validator/src/main/java/psidev/psi/ms/rulefilter/RuleFilterManager.java:325
Method
addObjectRule
Add a new object rule to the list of object rules only if it is not already in the list @param rule @return true if has been added or false if not
validator/src/main/java/psidev/psi/ms/MzMLValidator.java:993
Method
addObjectRuleToSkip
Add an object rule to the collection of object rules to skip @param objectRule
validator/src/main/java/psidev/psi/ms/rulefilter/RuleFilterManager.java:334
Method
canCheck
(Object o)
validator/src/main/java/psidev/psi/ms/object_rules/OtherSourceObjectRule.java:54
Method
canCheck
(Object o)
validator/src/main/java/psidev/psi/ms/object_rules/MassSpectraOrParameterFileInSourceFileListObjectRule.java:55
Method
canCheck
(Object t)
validator/src/main/java/psidev/psi/ms/object_rules/MandatoryElementsObjectRule.java:29
Method
canCheck
(Object o)
validator/src/main/java/psidev/psi/ms/object_rules/ParameterFileInSourceFileListObjectRule.java:49
Method
canCheck
(Object o)
validator/src/main/java/psidev/psi/ms/object_rules/MatrixSolutionObjectRule.java:44
Method
canCheck
(Object o)
validator/src/main/java/psidev/psi/ms/object_rules/AcquisitionParametersFileRefObjectRule.java:46
Method
canCheck
(Object o)
validator/src/main/java/psidev/psi/ms/object_rules/LaserWavelengthObjectRule.java:43
Method
canCheck
(Object o)
validator/src/main/java/psidev/psi/ms/object_rules/TemplateObjectRule.java:31
Method
canCheck
(Object o)
validator/src/main/java/psidev/psi/ms/object_rules/InstrumentConfigurationObjectRule.java:58
Method
canCheck
(Object o)
validator/src/main/java/psidev/psi/ms/object_rules/SoftwareListObjectRule.java:57
Method
canCheck
(Object o)
validator/src/main/java/psidev/psi/ms/object_rules/ExplicitAcquisitionParametersObjectRule.java:58
Method
check
(SourceComponent sourceComponent)
validator/src/main/java/psidev/psi/ms/object_rules/OtherSourceObjectRule.java:58
Method
check
(SourceFileList sourceFileList)
validator/src/main/java/psidev/psi/ms/object_rules/MassSpectraOrParameterFileInSourceFileListObjectRule.java:59
Method
check
(Object o)
validator/src/main/java/psidev/psi/ms/object_rules/MandatoryElementsObjectRule.java:34
Method
check
(SourceFileList sourceFileList)
validator/src/main/java/psidev/psi/ms/object_rules/ParameterFileInSourceFileListObjectRule.java:53
Method
check
(SourceComponent sourceComponent)
validator/src/main/java/psidev/psi/ms/object_rules/MatrixSolutionObjectRule.java:48
Method
check
(ScanSettings scanSettings)
validator/src/main/java/psidev/psi/ms/object_rules/AcquisitionParametersFileRefObjectRule.java:50
Method
check
(SourceComponent sourceComponent)
validator/src/main/java/psidev/psi/ms/object_rules/LaserWavelengthObjectRule.java:47
Method
check
(Object o)
validator/src/main/java/psidev/psi/ms/object_rules/TemplateObjectRule.java:36
Method
check
(InstrumentConfiguration instrumentConfiguration)
validator/src/main/java/psidev/psi/ms/object_rules/InstrumentConfigurationObjectRule.java:62
Method
check
(SoftwareList softwareList)
validator/src/main/java/psidev/psi/ms/object_rules/SoftwareListObjectRule.java:61
Method
check
(SoftwareList softwareList)
validator/src/main/java/psidev/psi/ms/object_rules/ExplicitAcquisitionParametersObjectRule.java:62
Method
clearObjectRules
()
validator/src/main/java/psidev/psi/ms/ExtendedValidatorReport.java:94
Method
construct
()
validator/src/main/java/psidev/psi/ms/MzMLValidatorGUI.java:491
Method
create
(Node node)
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ScanType.java:50
Method
createAcquisitionListType
Create an instance of {@link AcquisitionListType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:82
Method
createAcquisitionType
Create an instance of {@link AcquisitionType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:194
Method
createBinaryDataArrayType
Create an instance of {@link BinaryDataArrayType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:330
Method
createCVListType
Create an instance of {@link CVListType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:106
Method
createCVParamType
Create an instance of {@link CVParamType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:122
Method
createCVType
Create an instance of {@link CVType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:202
Method
createComponentListType
Create an instance of {@link ComponentListType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:154
Method
createComponentListTypeAnalyzer
Create an instance of {@link JAXBElement }{@code <}{@link ComponentType }{@code >}}
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:412
Method
createComponentListTypeDetector
Create an instance of {@link JAXBElement }{@code <}{@link ComponentType }{@code >}}
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:421
Method
createComponentListTypeSource
Create an instance of {@link JAXBElement }{@code <}{@link ComponentType }{@code >}}
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:403
Method
createComponentType
Create an instance of {@link ComponentType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:130
Method
createContactType
Create an instance of {@link ContactType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:322
Method
createCvMappingRuleCondition
Create an instance of {@link CvMappingRuleCondition }
validator/src/main/java/psidev/psi/ms/rulefilter/jaxb/ObjectFactory.java:75
Method
createCvMappingRuleConditions
Create an instance of {@link CvMappingRuleConditions }
validator/src/main/java/psidev/psi/ms/rulefilter/jaxb/ObjectFactory.java:139
Method
createCvMappingRuleToSkip
Create an instance of {@link CvMappingRuleToSkip }
validator/src/main/java/psidev/psi/ms/rulefilter/jaxb/ObjectFactory.java:91
Method
createDataProcessingListType
Create an instance of {@link DataProcessingListType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:306
Method
createDataProcessingType
Create an instance of {@link DataProcessingType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:170
Method
createDataProcessingTypeProcessingMethod
Create an instance of {@link DataProcessingType.ProcessingMethod }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:90
Method
createFileChecksumType
Create an instance of {@link FileChecksumType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:274
Method
createFileDescriptionType
Create an instance of {@link FileDescriptionType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:178
Method
createInstrumentListType
Create an instance of {@link InstrumentListType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:98
Method
createInstrumentSoftwareRefType
Create an instance of {@link InstrumentSoftwareRefType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:58
Method
createInstrumentType
Create an instance of {@link InstrumentType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:378
Method
createMandatoryElements
Create an instance of {@link MandatoryElements }
validator/src/main/java/psidev/psi/ms/rulefilter/jaxb/ObjectFactory.java:131
Method
createMandatoryMzIdentMLElement
Create an instance of {@link MandatoryMzIdentMLElement }
validator/src/main/java/psidev/psi/ms/rulefilter/jaxb/ObjectFactory.java:83
Method
createMandatoryMzMLElement
Create an instance of {@link MandatoryMzMLElement }
validator/src/main/java/psidev/psi/ms/rulefilter/jaxb/ObjectFactory.java:155
Method
createMzML
Create an instance of {@link JAXBElement }{@code <}{@link MzMLType }{@code >}}
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:394
Method
createMzMLType
Create an instance of {@link MzMLType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:210
Method
createObjectRuleCondition
Create an instance of {@link ObjectRuleCondition }
validator/src/main/java/psidev/psi/ms/rulefilter/jaxb/ObjectFactory.java:107
Method
createObjectRuleConditions
Create an instance of {@link ObjectRuleConditions }
validator/src/main/java/psidev/psi/ms/rulefilter/jaxb/ObjectFactory.java:115
Method
createObjectRuleToSkip
Create an instance of {@link ObjectRuleToSkip }
validator/src/main/java/psidev/psi/ms/rulefilter/jaxb/ObjectFactory.java:67
Method
createParamGroupRefType
Create an instance of {@link ParamGroupRefType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:114
Method
createParamGroupType
Create an instance of {@link ParamGroupType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:370
Method
createPrecursorListType
Create an instance of {@link PrecursorListType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:298
Method
createPrecursorType
Create an instance of {@link PrecursorType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:314
Method
createReferenceableParamGroupListType
Create an instance of {@link ReferenceableParamGroupListType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:138
Method
createReferenceableParamGroupType
Create an instance of {@link ReferenceableParamGroupType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:162
Method
createReferencedRules
Create an instance of {@link ReferencedRules }
validator/src/main/java/psidev/psi/ms/rulefilter/jaxb/ObjectFactory.java:163
Method
createReferences
Create an instance of {@link References }
validator/src/main/java/psidev/psi/ms/rulefilter/jaxb/ObjectFactory.java:147
Method
createRuleFilter
Create an instance of {@link RuleFilter }
validator/src/main/java/psidev/psi/ms/rulefilter/jaxb/ObjectFactory.java:99
Method
createRulesToSkipRef
Create an instance of {@link RulesToSkipRef }
validator/src/main/java/psidev/psi/ms/rulefilter/jaxb/ObjectFactory.java:59
Method
createRunType
Create an instance of {@link RunType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:338
Method
createRunTypeSourceFileRefList
Create an instance of {@link RunType.SourceFileRefList }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:354
Method
createRunTypeSourceFileRefListSourceFileRef
Create an instance of {@link RunType.SourceFileRefList.SourceFileRef }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:50
Method
createSampleListType
Create an instance of {@link SampleListType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:234
Method
createSampleType
Create an instance of {@link SampleType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:74
Method
createScanType
Create an instance of {@link ScanType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:242
Method
createSoftwareListType
Create an instance of {@link SoftwareListType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:386
Method
createSoftwareListTypeSoftware
Create an instance of {@link SoftwareListType.Software }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:250
Method
createSoftwareListTypeSoftwareSoftwareParam
Create an instance of {@link SoftwareListType.Software.SoftwareParam }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:266
Method
createSoftwareType
Create an instance of {@link SoftwareType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:186
Method
createSourceFileListType
Create an instance of {@link SourceFileListType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:258
Method
createSourceFileType
Create an instance of {@link SourceFileType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:146
Method
createSpectrumDescriptionType
Create an instance of {@link SpectrumDescriptionType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:290
Method
createSpectrumDescriptionTypeScan
Create an instance of {@link SpectrumDescriptionType.Scan }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:218
Method
createSpectrumDescriptionTypeScanSelectionWindowList
Create an instance of {@link SpectrumDescriptionType.Scan.SelectionWindowList }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:66
Method
createSpectrumDescriptionTypeScanSelectionWindowListSelectionWindow
Create an instance of {@link SpectrumDescriptionType.Scan.SelectionWindowList.SelectionWindow }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:362
Method
createSpectrumListType
Create an instance of {@link SpectrumListType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:282
Method
createSpectrumType
Create an instance of {@link SpectrumType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:226
Method
createUserCondition
Create an instance of {@link UserCondition }
validator/src/main/java/psidev/psi/ms/rulefilter/jaxb/ObjectFactory.java:123
Method
createUserConditions
Create an instance of {@link UserConditions }
validator/src/main/java/psidev/psi/ms/rulefilter/jaxb/ObjectFactory.java:43
Method
createUserOption
Create an instance of {@link UserOption }
validator/src/main/java/psidev/psi/ms/rulefilter/jaxb/ObjectFactory.java:51
Method
createUserParamType
Create an instance of {@link UserParamType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java:346
Method
finished
()
validator/src/main/java/psidev/psi/ms/MzMLValidatorGUI.java:547
Method
get
()
validator/src/main/java/psidev/psi/ms/swingworker/SwingWorker.java:40
Method
getAccession
Gets the value of the accession property. @return possible object is {@link String }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/SoftwareListType.java:467
Method
getAccession
Gets the value of the accession property. @return possible object is {@link String }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/CVParamType.java:155
Method
getAcqNumber
Gets the value of the acqNumber property.
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/AcquisitionType.java:129
Method
getAcquisitionList
Gets the value of the acquisitionList property. @return possible object is {@link AcquisitionListType }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/SpectrumDescriptionType.java:174
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