hub / github.com/HUPO-PSI/mzML

github.com/HUPO-PSI/mzML @main

Chat with this repo

repository ↗ · DeepWiki ↗ · + Follow

770 symbols 1,485 edges 80 files 456 documented · 59% ● updated 17d ago★ 383 open issues

Browse by type

⨍ Functions 679◇ Types & classes 91

What it actually does AI analysis from the code graph — generated when you open this

loading…

Extension points exported contracts — how you extend this code

RuleFilterAgent (Interface)

Interface that provides the methods to implement that parse rule filter xml files. That files follow the xsd schema loca [2 …

validator/src/main/java/psidev/psi/ms/rulefilter/RuleFilterAgent.java

browse all types & interfaces →

Core symbols most depended-on inside this repo

↓ 14 filesParamGroupType

Structure allowing the use of a controlled (cvParam) or uncontrolled vocabulary (userParam), or a reference to a predefined set …

validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ParamGroupType.java

↓ 9 filesObjectRuleUtil

validator/src/main/java/psidev/psi/ms/object_rules/util/ObjectRuleUtil.java

↓ 4 filesRuleFilterManager

This class provides the methods to maintain a list of object rules and a list of cv mapping rules to skip. Its behaviour is …

validator/src/main/java/psidev/psi/ms/rulefilter/RuleFilterManager.java

↓ 4 filesMassSpectraOrParameterFileInSourceFileListObjectRule

Check if there is an spectra file or a parameter file in the source file list @author Salva

validator/src/main/java/psidev/psi/ms/object_rules/MassSpectraOrParameterFileInSourceFileListObjectRule.java

↓ 3 filesMzMLValidatorGUI

@author __USER__

validator/src/main/java/psidev/psi/ms/MzMLValidatorGUI.java

↓ 3 filesExtendedValidatorReport

validator/src/main/java/psidev/psi/ms/ExtendedValidatorReport.java

browse all functions →

Shape

Method 679

Class 88

Enum 2

Interface 1

Languages

Java100%

Modules by API surface

validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java49 symbols

validator/src/main/java/psidev/psi/ms/MzMLValidator.java47 symbols

validator/src/main/java/psidev/psi/ms/MzMLValidatorGUI.java32 symbols

validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/RunType.java29 symbols

validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/SpectrumDescriptionType.java28 symbols

validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/SoftwareListType.java27 symbols

validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/MzMLType.java26 symbols

validator/src/main/java/psidev/psi/ms/rulefilter/RuleFilterManager.java25 symbols

validator/src/main/java/psidev/psi/ms/ExtendedValidatorReport.java20 symbols

validator/src/main/java/psidev/psi/ms/rulefilter/jaxb/ObjectFactory.java18 symbols

validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/SpectrumType.java17 symbols

validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/CVParamType.java16 symbols

For agents

$ claude mcp add mzML \
  -- python -m otcore.mcp_server <graph>

⬇ download graph artifact

github.com/HUPO-PSI/mzML @main

Extension points exported contracts — how you extend this code

Core symbols most depended-on inside this repo

Shape

Languages

Modules by API surface

For agents

Ask about this repo answers extend the page