hub / github.com/HUPO-PSI/mzML

github.com/HUPO-PSI/mzML @main

770 symbols 1,485 edges 80 files 456 documented · 59%

What it actually does AI analysis from the code graph — generated when you open this

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Extension points exported contracts — how you extend this code

Interface that provides the methods to implement that parse rule filter xml files. That files follow the xsd schema loca [2 …

validator/src/main/java/psidev/psi/ms/rulefilter/RuleFilterAgent.java

Core symbols most depended-on inside this repo

getId

called by 34

validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/RunType.java

getId

called by 33

validator/src/main/java/psidev/psi/ms/rulefilter/jaxb/UserOption.java

getCvParam

called by 27

validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ParamGroupType.java

checkAccessionsInCVParams

called by 21

validator/src/main/java/psidev/psi/ms/object_rules/util/ObjectRuleUtil.java

getValue

called by 21

validator/src/main/java/psidev/psi/ms/swingworker/SwingWorker.java

get

called by 20

validator/src/main/java/psidev/psi/ms/swingworker/SwingWorker.java

getLevel

called by 15

validator/src/main/java/psidev/psi/ms/MzMLValidatorGUI.java

toString

called by 15

validator/src/main/java/psidev/psi/ms/ClusteredContext.java

Shape

Method 679

Class 88

Enum 2

Interface 1

Languages

Java100%

Modules by API surface

validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ObjectFactory.java49 symbols

validator/src/main/java/psidev/psi/ms/MzMLValidator.java47 symbols

validator/src/main/java/psidev/psi/ms/MzMLValidatorGUI.java32 symbols

validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/RunType.java29 symbols

validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/SpectrumDescriptionType.java28 symbols

validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/SoftwareListType.java27 symbols

validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/MzMLType.java26 symbols

validator/src/main/java/psidev/psi/ms/rulefilter/RuleFilterManager.java25 symbols

validator/src/main/java/psidev/psi/ms/ExtendedValidatorReport.java20 symbols

validator/src/main/java/psidev/psi/ms/rulefilter/jaxb/ObjectFactory.java18 symbols

validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/SpectrumType.java17 symbols

validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/CVParamType.java16 symbols

For agents

$ claude mcp add mzML \
  -- python -m otcore.mcp_server <graph>

⬇ download graph artifact