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Functions679 in github.com/HUPO-PSI/mzML

⨍ Functions 679◇ Types & classes 91
↓ 1 callersMethodinitProgress
(int min, int max, int current)
validator/src/main/java/psidev/psi/ms/MzMLValidatorGUI.java:868
↓ 1 callersMethodinterrupt
A new method that interrupts the worker thread. Call this method to force the worker to stop what it's doing.
validator/src/main/java/psidev/psi/ms/swingworker/SwingWorker.java:77
↓ 1 callersMethodisDone
(int totalCount)
validator/src/main/java/psidev/psi/ms/MzMLValidator.java:1070
↓ 1 callersMethodisValidMzML
(File mzML, URI schemaUri)
validator/src/main/java/psidev/psi/ms/MzMLValidator.java:1004
↓ 1 callersMethodjButtonBrowseActionPerformed
(ActionEvent evt)
validator/src/main/java/psidev/psi/ms/MzMLValidatorGUI.java:430
↓ 1 callersMethodjButtonValidateActionPerformed
(ActionEvent evt)
validator/src/main/java/psidev/psi/ms/MzMLValidatorGUI.java:435
↓ 1 callersMethodobjectRuleExecuted
Update the lists of object rules depending on the result of the rule @param rule @param resultCheck
validator/src/main/java/psidev/psi/ms/ExtendedValidatorReport.java:106
↓ 1 callersMethodparseXml
(String xmlSnippet)
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/PrecursorType.java:79
↓ 1 callersMethodparseXml
(String xmlSnippet)
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/SpectrumListType.java:78
↓ 1 callersMethodparseXml
(String xmlSnippet)
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/CVType.java:76
↓ 1 callersMethodparseXml
(String xmlSnippet)
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/SoftwareListType.java:100
↓ 1 callersMethodparseXml
(String xmlSnippet)
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/SoftwareListType.java:260
↓ 1 callersMethodparseXml
(String xmlSnippet)
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/SoftwareListType.java:406
↓ 1 callersMethodparseXml
(String xmlSnippet)
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/SourceFileListType.java:78
↓ 1 callersMethodparseXml
(String xmlSnippet)
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/RunType.java:108
↓ 1 callersMethodparseXml
(String xmlSnippet)
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/RunType.java:382
↓ 1 callersMethodparseXml
(String xmlSnippet)
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/RunType.java:522
↓ 1 callersMethodparseXml
(String xmlSnippet)
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ContactType.java:70
↓ 1 callersMethodparseXml
(String xmlSnippet)
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/PrecursorListType.java:78
↓ 1 callersMethodparseXml
(String xmlSnippet)
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/InstrumentSoftwareRefType.java:65
↓ 1 callersMethodparseXml
(String xmlSnippet)
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/SampleListType.java:78
↓ 1 callersMethodparseXml
(String xmlSnippet)
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ParamGroupRefType.java:113
↓ 1 callersMethodparseXml
(String xmlSnippet)
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/SpectrumType.java:91
↓ 1 callersMethodparseXml
(String xmlSnippet)
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/BinaryDataArrayType.java:81
↓ 1 callersMethodparseXml
(String xmlSnippet)
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/InstrumentListType.java:78
↓ 1 callersMethodparseXml
(String xmlSnippet)
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/SourceFileType.java:84
↓ 1 callersMethodparseXml
(String xmlSnippet)
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/CVListType.java:78
↓ 1 callersMethodparseXml
(String xmlSnippet)
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/AcquisitionType.java:75
↓ 1 callersMethodparseXml
(String xmlSnippet)
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/MzMLType.java:107
↓ 1 callersMethodparseXml
(String xmlSnippet)
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/InstrumentType.java:80
↓ 1 callersMethodparseXml
(String xmlSnippet)
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/SpectrumDescriptionType.java:108
↓ 1 callersMethodparseXml
(String xmlSnippet)
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/SpectrumDescriptionType.java:306
↓ 1 callersMethodparseXml
(String xmlSnippet)
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/SpectrumDescriptionType.java:438
↓ 1 callersMethodparseXml
(String xmlSnippet)
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/SpectrumDescriptionType.java:574
↓ 1 callersMethodparseXml
(String xmlSnippet)
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/AcquisitionListType.java:84
↓ 1 callersMethodparseXml
(String xmlSnippet)
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/CVParamType.java:83
↓ 1 callersMethodparseXml
(String xmlSnippet)
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/DataProcessingListType.java:78
↓ 1 callersMethodparseXml
(String xmlSnippet)
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ComponentType.java:69
↓ 1 callersMethodparseXml
(String xmlSnippet)
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/UserParamType.java:73
↓ 1 callersMethodparseXml
(String xmlSnippet)
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ComponentListType.java:90
↓ 1 callersMethodparseXml
(String xmlSnippet)
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/FileChecksumType.java:72
↓ 1 callersMethodparseXml
(String xmlSnippet)
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/DataProcessingType.java:89
↓ 1 callersMethodparseXml
(String xmlSnippet)
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/DataProcessingType.java:259
↓ 1 callersMethodparseXml
(String xmlSnippet)
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ReferenceableParamGroupType.java:69
↓ 1 callersMethodparseXml
(String xmlSnippet)
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/FileDescriptionType.java:80
↓ 1 callersMethodparseXml
(String xmlSnippet)
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ReferenceableParamGroupListType.java:78
↓ 1 callersMethodparseXml
(String xmlSnippet)
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ParamGroupType.java:83
↓ 1 callersMethodparseXml
(String xmlSnippet)
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/SampleType.java:72
↓ 1 callersMethodprintCvContextReport
()
validator/src/main/java/psidev/psi/ms/MzMLValidator.java:490
↓ 1 callersMethodprintMessages
(Collection aMessages)
validator/src/main/java/psidev/psi/ms/MzMLValidator.java:1140
↓ 1 callersMethodprintRuleFilter
()
validator/src/main/java/psidev/psi/ms/rulefilter/RuleFilterManager.java:467
↓ 1 callersMethodprintUsage
()
validator/src/main/java/psidev/psi/ms/MzMLSchemaValidator.java:188
↓ 1 callersMethodprintUsage
()
validator/src/main/java/psidev/psi/ms/MzMLValidator.java:1129
↓ 1 callersMethodprintValidatorMessages
(Collection<ValidatorMessage> messages)
validator/src/main/java/psidev/psi/ms/MzMLValidatorGUI.java:782
↓ 1 callersMethodreset
Method to reset all the fields in this validator. @throws CvRuleReaderException @throws ValidatorException @throws IOException
validator/src/main/java/psidev/psi/ms/MzMLValidator.java:1201
↓ 1 callersMethodrestartRulesToSkip
Restarts the list of rules to skip
validator/src/main/java/psidev/psi/ms/rulefilter/RuleFilterManager.java:405
↓ 1 callersMethodselectFile
()
validator/src/main/java/psidev/psi/ms/MzMLValidatorGUI.java:806
↓ 1 callersMethodsetAccession
Sets the value of the accession property. @param value allowed object is {@link String }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/SoftwareListType.java:479
↓ 1 callersMethodsetAccession
Sets the value of the accession property. @param value allowed object is {@link String }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/MzMLType.java:424
↓ 1 callersMethodsetAccession
Sets the value of the accession property. @param value allowed object is {@link String }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/CVParamType.java:167
↓ 1 callersMethodsetAcqNumber
Sets the value of the acqNumber property.
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/AcquisitionType.java:137
↓ 1 callersMethodsetArrayLength
Sets the value of the arrayLength property. @param value allowed object is {@link BigInteger }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/BinaryDataArrayType.java:182
↓ 1 callersMethodsetCount
Sets the value of the count property. @param value allowed object is {@link BigInteger }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/SpectrumListType.java:172
↓ 1 callersMethodsetCount
Sets the value of the count property. @param value allowed object is {@link BigInteger }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/SoftwareListType.java:195
↓ 1 callersMethodsetCount
Sets the value of the count property. @param value allowed object is {@link BigInteger }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/SourceFileListType.java:173
↓ 1 callersMethodsetCount
Sets the value of the count property. @param value allowed object is {@link BigInteger }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/RunType.java:477
↓ 1 callersMethodsetCount
Sets the value of the count property. @param value allowed object is {@link BigInteger }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/PrecursorListType.java:172
↓ 1 callersMethodsetCount
Sets the value of the count property. @param value allowed object is {@link BigInteger }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/SampleListType.java:173
↓ 1 callersMethodsetCount
Sets the value of the count property. @param value allowed object is {@link BigInteger }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/InstrumentListType.java:173
↓ 1 callersMethodsetCount
Sets the value of the count property. @param value allowed object is {@link BigInteger }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/CVListType.java:173
↓ 1 callersMethodsetCount
Sets the value of the count property.
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/SpectrumDescriptionType.java:525
↓ 1 callersMethodsetCount
Sets the value of the count property. @param value allowed object is {@link BigInteger }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/AcquisitionListType.java:188
↓ 1 callersMethodsetCount
Sets the value of the count property. @param value allowed object is {@link BigInteger }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/DataProcessingListType.java:173
↓ 1 callersMethodsetCount
Sets the value of the count property. @param value allowed object is {@link BigInteger }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ComponentListType.java:187
↓ 1 callersMethodsetCount
Sets the value of the count property. @param value allowed object is {@link BigInteger }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ReferenceableParamGroupListType.java:173
↓ 1 callersMethodsetCvLabel
Sets the value of the cvLabel property. @param value allowed object is {@link String }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/CVType.java:173
↓ 1 callersMethodsetCvLabel
Sets the value of the cvLabel property. @param value allowed object is {@link String }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/SoftwareListType.java:503
↓ 1 callersMethodsetCvLabel
Sets the value of the cvLabel property. @param value allowed object is {@link String }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/CVParamType.java:191
↓ 1 callersMethodsetDataProcessingRef
Sets the value of the dataProcessingRef property. @param value allowed object is {@link String }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/SpectrumType.java:234
↓ 1 callersMethodsetDataProcessingRef
Sets the value of the dataProcessingRef property. @param value allowed object is {@link String }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/BinaryDataArrayType.java:207
↓ 1 callersMethodsetEncodedLength
Sets the value of the encodedLength property. @param value allowed object is {@link BigInteger }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/BinaryDataArrayType.java:232
↓ 1 callersMethodsetFullName
Sets the value of the fullName property. @param value allowed object is {@link String }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/CVType.java:197
↓ 1 callersMethodsetId
Sets the value of the id property. @param value allowed object is {@link String }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/SoftwareListType.java:352
↓ 1 callersMethodsetId
Sets the value of the id property. @param value allowed object is {@link String }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/RunType.java:250
↓ 1 callersMethodsetId
Sets the value of the id property. @param value allowed object is {@link String }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/SpectrumType.java:258
↓ 1 callersMethodsetId
Sets the value of the id property. @param value allowed object is {@link String }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/SourceFileType.java:162
↓ 1 callersMethodsetId
Sets the value of the id property. @param value allowed object is {@link String }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/MzMLType.java:448
↓ 1 callersMethodsetId
Sets the value of the id property. @param value allowed object is {@link String }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/InstrumentType.java:204
↓ 1 callersMethodsetId
Sets the value of the id property. @param value allowed object is {@link String }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/DataProcessingType.java:188
↓ 1 callersMethodsetId
Sets the value of the id property. @param value allowed object is {@link String }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ReferenceableParamGroupType.java:134
↓ 1 callersMethodsetId
Sets the value of the id property. @param value allowed object is {@link String }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/SampleType.java:138
↓ 1 callersMethodsetMethodOfCombination
Sets the value of the methodOfCombination property. @param value allowed object is {@link String }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/AcquisitionListType.java:212
↓ 1 callersMethodsetMsLevel
Sets the value of the msLevel property.
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/SpectrumType.java:274
↓ 1 callersMethodsetName
Sets the value of the name property. @param value allowed object is {@link String }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/SoftwareListType.java:527
↓ 1 callersMethodsetName
Sets the value of the name property. @param value allowed object is {@link String }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/CVParamType.java:215
↓ 1 callersMethodsetName
Sets the value of the name property. @param value allowed object is {@link String }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/UserParamType.java:142
↓ 1 callersMethodsetObjectRuleAsInvalid
(String ruleId)
validator/src/main/java/psidev/psi/ms/ExtendedValidatorReport.java:246
↓ 1 callersMethodsetOrder
Sets the value of the order property.
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/ComponentType.java:129
↓ 1 callersMethodsetOrder
Sets the value of the order property. @param value allowed object is {@link BigInteger }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/DataProcessingType.java:321
↓ 1 callersMethodsetRef
Sets the value of the ref property. @param value allowed object is {@link String }
validator/src/main/java/psidev/psi/ms/mzml/mapping/jaxb/RunType.java:583
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