Receive notification of a recoverable error. <p/> <p> This corresponds to the definition of "error" in section 1.2 of the W3C XML 1.0 Recommendation.

Gets the value of the activation property. @return possible object is {@link ParamGroupType }

Gets the value of the binaryDataArray property. <p> This accessor method returns a reference to the live list, not a snapshot. Therefore any modifica

Gets the value of the mandatoryMzIdentMLElement property. <p> This accessor method returns a reference to the live list, not a snapshot. Therefore an

Gets the value of the mandatoryMzMLElement property. <p> This accessor method returns a reference to the live list, not a snapshot. Therefore any mod

Gets the value of the mzIdentMLElement property. @return possible object is {@link String }

Gets the value of the mzMLElement property. @return possible object is {@link String }

Gets the value of the name property. @return possible object is {@link String }

Gets the value of the sourceFileRefList property. @return possible object is {@link RunType.SourceFileRefList }

Gets the value of the spectrumRef property. @return possible object is {@link String }

Gets the value of the userCondition property. <p> This accessor method returns a reference to the live list, not a snapshot. Therefore any modificati

Gets the value of the userConditions property. @return possible object is {@link UserConditions }

Sets the value of the instrumentRef property. @param value allowed object is {@link String }

@param level MessageLevel with the minimal messagelevel to report.

Sets the value of the name property. @param value allowed object is {@link String }

Sets the ruleFilterManager @param ruleFilterManager

@param validatroGUI MzMLValidatorGUI that acts as the GUI parent of this validator. Can be 'null' if ran from the command-line.

Start the worker thread.

This method carries out the work of validating the XML file passed in through 'inputStream' against the compiled XML schema 'schema'. This method is a

Validate an input stream @param aInputStream @return @throws ValidatorException

Apply object rules @return a collection of {@link ValidatorMessage} @throws ValidatorException

Check for the presence of all mandatory elements required at this validation type

Compute the value to be returned by the <code>get</code> method.

Receive notification of a non-recoverable error. <p/> <p> This corresponds to the definition of "fatal error" in section 1.2 of the W3C XML 1.0 Recomm

Depending of the user selections some object and cvMapping rules will be tagged to be skipped in the validator @param selectedOptions a se

Filters the list of ValidatorMessages checking each message with the lists of rules to skip and return the final list of messages @return the collect

Called on the event dispatching thread (not on the worker thread) after the <code>construct</code> method has returned.

Gets the value of the acquisition property. <p> This accessor method returns a reference to the live list, not a snapshot. Therefore any modification

Gets the value of the binary property. @return possible object is byte[]

Gets the value of the contact property. <p> This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you

Gets the value of the cv property. <p> This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make

Gets the value of the cvParam property. <p> This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you

Gets the value of the dataProcessing property. <p> This accessor method returns a reference to the live list, not a snapshot. Therefore any modificat

Gets the value of the instrument property. <p> This accessor method returns a reference to the live list, not a snapshot. Therefore any modification

Gets the value of the mandatoryElements property. @return possible object is {@link MandatoryElements }

Look for the the chosen options in the rule filter file and returns a list with the identifiers of the rules to exclude @param selectedOptions

Gets the value of the processingMethod property. <p> This accessor method returns a reference to the live list, not a snapshot. Therefore any modific

Gets the value of the referenceableParamGroup property. <p> This accessor method returns a reference to the live list, not a snapshot. Therefore any

Gets the value of the sample property. <p> This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you

Gets the value of the selectionWindow property. <p> This accessor method returns a reference to the live list, not a snapshot. Therefore any modifica

Gets the value of the sourceFileRef property. <p> This accessor method returns a reference to the live list, not a snapshot. Therefore any modificati

Gets the value of the spectrum property. <p> This accessor method returns a reference to the live list, not a snapshot. Therefore any modification yo

Return a unique ID. @return a unique id.