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github.com/rambaut/figtree
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Functions
2,432 in github.com/rambaut/figtree
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Functions
2,432
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Types & classes
285
↓ 386 callers
Method
add
(String s)
packaging_tools/windows/launch4j/src/net/sf/launch4j/Builder.java:173
↓ 250 callers
Method
setEnabled
Enable or disable the component
packaging_tools/windows/launch4j/src/net/sf/launch4j/binding/Binding.java:61
↓ 247 callers
Method
add
(String var, int pos)
packaging_tools/windows/launch4j/src/net/sf/launch4j/formimpl/JreFormImpl.java:148
↓ 247 callers
Method
put
Java Bean property -> Component
packaging_tools/windows/launch4j/src/net/sf/launch4j/binding/Binding.java:53
↓ 224 callers
Method
get
Component -> Java Bean property
packaging_tools/windows/launch4j/src/net/sf/launch4j/binding/Binding.java:55
↓ 189 callers
Method
append
(String line)
packaging_tools/windows/launch4j/src/net/sf/launch4j/Log.java:50
↓ 122 callers
Method
setName
(String name)
src/figtree/treeviewer/annotations/AnnotationDefinition.java:73
↓ 113 callers
Method
getString
(String key)
packaging_tools/windows/launch4j/src/net/sf/launch4j/form/Messages.java:48
↓ 103 callers
Method
setText
(Double obj)
src/figtree/ui/components/RealNumberField.java:86
↓ 103 callers
Method
setValue
Sets the lower value in the range.
src/figtree/ui/components/RangeSlider.java:95
↓ 99 callers
Method
getAttribute
(String name)
src/figtree/treeviewer/ReRootedTree.java:584
↓ 90 callers
Method
getHeight
(double age, RootedTree tree)
src/figtree/treeviewer/TimeScale.java:67
↓ 79 callers
Method
addChangeListener
(ChangeListener x)
src/figtree/ui/components/RealNumberField.java:214
↓ 68 callers
Method
repaint
()
src/figtree/webui/TreeWidget.java:29
↓ 60 callers
Method
getString
(String key)
packaging_tools/windows/launch4j/src/net/sf/launch4j/config/Messages.java:50
↓ 58 callers
Method
getValue
(Attributable item)
src/figtree/treeviewer/decorators/ContinuousScale.java:152
↓ 56 callers
Method
clear
Clear component, set it to the default value
packaging_tools/windows/launch4j/src/net/sf/launch4j/binding/Binding.java:51
↓ 56 callers
Method
getFont
(Font font)
src/figtree/treeviewer/decorators/Decorator.java:70
↓ 54 callers
Method
setFont
(Font font)
src/figtree/treeviewer/painters/LabelPainter.java:107
↓ 54 callers
Method
toString
()
src/figtree/treeviewer/FindPanel.java:56
↓ 46 callers
Method
setVisible
(boolean visible)
src/figtree/treeviewer/painters/NodePainter.java:92
↓ 46 callers
Method
transform
Polar transform @param point @return the point in polar space
src/figtree/treeviewer/treelayouts/PolarTreeLayout.java:726
↓ 45 callers
Method
getValue
Returns the lower value in the range.
src/figtree/ui/components/RangeSlider.java:87
↓ 41 callers
Method
recalibrate
()
src/figtree/treeviewer/TreePane.java:93
↓ 40 callers
Method
append
(StringBuffer sb, List<String> list, String separator)
packaging_tools/windows/launch4j/src/net/sf/launch4j/RcBuilder.java:295
↓ 39 callers
Method
addController
(Controller controller)
src/figtree/panel/SimpleControlPalette.java:59
↓ 37 callers
Method
getString
(String key)
packaging_tools/windows/launch4j/src/net/sf/launch4j/formimpl/Messages.java:48
↓ 37 callers
Method
setIcon
(File icon)
packaging_tools/windows/launch4j/src/net/sf/launch4j/config/Config.java:253
↓ 35 callers
Method
getValue
(RealNumberField field, double defaultValue)
src/figtree/treeviewer/painters/ScaleAxisPainterController.java:290
↓ 33 callers
Method
getName
()
src/figtree/treeviewer/ContinuousColourScaleDialog.java:234
↓ 33 callers
Method
isVisible
If this is false then the painter should not be displayed. @return is visible?
src/figtree/treeviewer/painters/Painter.java:70
↓ 32 callers
Method
firePainterChanged
()
src/figtree/treeviewer/painters/AbstractPainter.java:45
↓ 31 callers
Method
getChildren
@param node the node whose children are being requested. @return the list of nodes that are the children of the given node. The list may be em
src/figtree/treeviewer/ReRootedTree.java:210
↓ 31 callers
Method
setBorder
(Paint borderPaint, Stroke borderStroke)
src/figtree/treeviewer/painters/NodePainter.java:81
↓ 30 callers
Method
getProperty
Java Bean property bound to a component
packaging_tools/windows/launch4j/src/net/sf/launch4j/binding/Binding.java:49
↓ 30 callers
Method
setStroke
(Stroke stroke)
src/figtree/treeviewer/painters/NodePainter.java:71
↓ 28 callers
Method
close
(final InputStream o)
packaging_tools/windows/launch4j/src/net/sf/launch4j/Util.java:177
↓ 27 callers
Method
getInstance
()
packaging_tools/windows/launch4j/src/net/sf/launch4j/config/ConfigPersister.java:88
↓ 27 callers
Method
getNodes
Returns an array of 2 nodes which are the nodes at either end of the edge. @param edge @return an array of 2 edges
src/figtree/treeviewer/ReRootedTree.java:425
↓ 27 callers
Method
setBackground
(Paint background)
src/figtree/treeviewer/painters/NodePainter.java:76
↓ 25 callers
Method
getPaint
(Paint paint)
src/figtree/treeviewer/decorators/Decorator.java:47
↓ 25 callers
Method
getRootNode
The root of the tree has the largest node height of all nodes in the tree. @return the root of the tree.
src/figtree/treeviewer/ReRootedTree.java:274
↓ 24 callers
Method
getBackground
()
src/figtree/treeviewer/painters/NodePainter.java:53
↓ 24 callers
Method
getTaxon
@param node the node whose associated taxon is being requested. @return the taxon object associated with the given node, or null if the node i
src/figtree/treeviewer/ReRootedTree.java:309
↓ 23 callers
Method
addListener
(AttributeComboHelperListener listener)
src/figtree/treeviewer/painters/AttributeComboHelper.java:287
↓ 23 callers
Method
getNumberFormat
()
src/figtree/treeviewer/painters/LabelPainter.java:86
↓ 23 callers
Function
loadString
packaging_tools/windows/launch4j/head_src/head.c:202
↓ 22 callers
Method
fireTreeSettingsChanged
()
src/figtree/treeviewer/MultiPaneTreeViewer.java:556
↓ 22 callers
Method
getPanel
()
src/figtree/treeviewer/ContinuousColourScaleDialog.java:231
↓ 22 callers
Method
getString
(String key)
packaging_tools/windows/launch4j/src/net/sf/launch4j/binding/Messages.java:50
↓ 21 callers
Method
addText
(int id, String text)
packaging_tools/windows/launch4j/src/net/sf/launch4j/RcBuilder.java:305
↓ 21 callers
Method
getText
()
packaging_tools/windows/launch4j/src/net/sf/launch4j/formimpl/AbstractAcceptListener.java:59
↓ 21 callers
Method
isEmpty
(String s)
packaging_tools/windows/launch4j/src/net/sf/launch4j/binding/Validator.java:62
↓ 20 callers
Method
format
This method returns null. I have found no meaningful translation of floating point numbers to Roman numerals, however the NumberFormat metho
src/figtree/ui/RomanFormat.java:44
↓ 20 callers
Method
getIcon
()
src/figtree/application/preferences/FontsPreferencesSection.java:53
↓ 20 callers
Method
getPath
JRE path
packaging_tools/windows/launch4j/src/net/sf/launch4j/config/Jre.java:230
↓ 20 callers
Method
setAttribute
(String name, Object value)
src/figtree/treeviewer/ReRootedTree.java:580
↓ 19 callers
Method
fireTreeLayoutChanged
()
src/figtree/treeviewer/treelayouts/AbstractTreeLayout.java:56
↓ 19 callers
Method
paint
Called to actually paint into the current graphics context. The painter should respect the bounds. @param g2 @param item @param justification @param b
src/figtree/treeviewer/painters/Painter.java:88
↓ 18 callers
Method
getTreePane
()
src/figtree/webui/TreeWidget.java:125
↓ 18 callers
Method
print
(Graphics graphics, PageFormat pageFormat, int pageIndex)
src/figtree/treeviewer/TreePane.java:1447
↓ 17 callers
Method
centreLine
(String line, int pageWidth)
src/figtree/application/FigTreeApplication.java:194
↓ 17 callers
Method
getPreferredHeight
()
src/figtree/treeviewer/painters/Painter.java:91
↓ 17 callers
Method
setBranchDecorator
(Decorator branchDecorator, boolean isGradient)
src/figtree/treeviewer/TreePane.java:261
↓ 17 callers
Method
setItem
(Attributable item, Attributable fallbackItem)
src/figtree/treeviewer/decorators/Decorator.java:43
↓ 17 callers
Method
setNumberFormat
(NumberFormat numberFormat)
src/figtree/treeviewer/painters/LabelPainter.java:117
↓ 16 callers
Method
getExternalNodes
@return a set of all nodes that have degree 1. These nodes are often refered to as 'tips'.
src/figtree/treeviewer/ReRootedTree.java:283
↓ 16 callers
Method
getForeground
()
src/figtree/treeviewer/painters/NodePainter.java:49
↓ 16 callers
Method
toString
()
packaging_tools/windows/launch4j/src/net/sf/launch4j/ant/StringWrapper.java:66
↓ 15 callers
Method
calibrate
Called to calibrate the painters for a given graphics context. This should work out the preferred width and height (perhaps for the current font). @pa
src/figtree/treeviewer/painters/Painter.java:78
↓ 15 callers
Method
fireTreeSettingsChanged
()
src/figtree/treeviewer/DefaultTreeViewer.java:791
↓ 15 callers
Method
getFile
Splash screen in BMP format.
packaging_tools/windows/launch4j/src/net/sf/launch4j/config/Splash.java:69
↓ 15 callers
Method
isExternal
@param node the node @return true if the node is of degree 1.
src/figtree/treeviewer/ReRootedTree.java:320
↓ 15 callers
Method
signalViolation
(String property, String msg)
packaging_tools/windows/launch4j/src/net/sf/launch4j/binding/Validator.java:249
↓ 15 callers
Method
toString
()
src/figtree/treeviewer/painters/NodeShapePainter.java:61
↓ 14 callers
Method
checkString
(String s, int maxLength, String property, String name)
packaging_tools/windows/launch4j/src/net/sf/launch4j/binding/Validator.java:73
↓ 14 callers
Method
getContentPane
()
src/figtree/treeviewer/TreeViewer.java:167
↓ 14 callers
Method
getLength
(double time, RootedTree tree)
src/figtree/treeviewer/TimeScale.java:71
↓ 14 callers
Method
getMinorTickValue
getMinorTick Returns the value of the minorTickIndex'th minor tick
src/figtree/treeviewer/ScaleAxis.java:693
↓ 14 callers
Method
getStroke
(Stroke stroke)
src/figtree/treeviewer/decorators/Decorator.java:69
↓ 14 callers
Method
getTree
()
src/figtree/treeviewer/TreePane.java:74
↓ 14 callers
Method
removeAttribute
(String name)
src/figtree/treeviewer/ReRootedTree.java:588
↓ 13 callers
Method
checkOptString
(String s, int maxLength, String property, String name)
packaging_tools/windows/launch4j/src/net/sf/launch4j/binding/Validator.java:137
↓ 13 callers
Method
getConfig
()
packaging_tools/windows/launch4j/src/net/sf/launch4j/config/ConfigPersister.java:92
↓ 13 callers
Method
getContinuousScale
()
src/figtree/treeviewer/decorators/ContinuousColourDecorator.java:59
↓ 13 callers
Method
getProperty
Get property and remove trailing # comments.
packaging_tools/windows/launch4j/src/net/sf/launch4j/config/ConfigPersister.java:251
↓ 13 callers
Method
getTrees
()
src/figtree/treeviewer/TreeViewer.java:51
↓ 13 callers
Method
isExternal
()
src/figtree/treeviewer/painters/NodeShapePainter.java:126
↓ 13 callers
Function
quit
packaging_tools/windows/launch4j/sign4j/sign4j.c:237
↓ 13 callers
Method
transformY
(double y)
src/figtree/treeviewer/treelayouts/RectilinearTreeLayout.java:650
↓ 12 callers
Method
setBranchColouringDecorator
(String branchColouringAttribute, Decorator branchColouringDecorator)
src/figtree/treeviewer/TreePane.java:267
↓ 12 callers
Method
transform
Transform a value
src/figtree/treeviewer/ScaleAxis.java:102
↓ 11 callers
Method
appendIndent
(StringBuilder builder, int indent)
src/figtree/application/JSONTreeExporter.java:174
↓ 11 callers
Method
clearSelectionPaths
()
src/figtree/treeviewer/TreePane.java:1439
↓ 11 callers
Method
getAnnotationDefinitions
()
src/figtree/treeviewer/ExtendedTreeViewer.java:152
↓ 11 callers
Method
getInternalNodes
@return a set of all nodes that have degree 2 or more. These nodes are often refered to as internal nodes.
src/figtree/treeviewer/ReRootedTree.java:291
↓ 11 callers
Method
getParent
@param node the node whose parent is requested @return the parent node of the given node, or null if the node is the root node.
src/figtree/treeviewer/ReRootedTree.java:254
↓ 11 callers
Method
getPreferredWidth
()
src/figtree/treeviewer/painters/Painter.java:90
↓ 11 callers
Method
registerPropertyChangeListener
(JComponent c)
packaging_tools/windows/launch4j/src/net/sf/launch4j/binding/Bindings.java:96
↓ 10 callers
Method
fireSelectionChanged
()
src/figtree/treeviewer/TreePane.java:1342
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