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Functions2,432 in github.com/rambaut/figtree

↓ 10 callersMethodgetAttributeNames
()
src/figtree/treeviewer/ReRootedTree.java:592
↓ 10 callersMethodgetBorderPaint
()
src/figtree/treeviewer/painters/NodePainter.java:57
↓ 10 callersMethodgetBorderStroke
()
src/figtree/treeviewer/painters/NodePainter.java:61
↓ 10 callersMethodgetHeight
@param node the node whose height is being requested. @return the height of the given node. The height will be less than the parent's height a
src/figtree/treeviewer/ReRootedTree.java:226
↓ 10 callersMethodgetInstance
()
packaging_tools/windows/launch4j/src/net/sf/launch4j/formimpl/MainFrame.java:108
↓ 10 callersMethodgetString
(String key)
packaging_tools/windows/launch4j/src/net/sf/launch4j/Messages.java:50
↓ 10 callersMethodsetOrderBranchesOn
(boolean orderBranchesOn)
src/figtree/treeviewer/TreePane.java:471
↓ 10 callersMethodsetupColours
()
src/figtree/treeviewer/decorators/HSBDiscreteColourDecorator.java:109
↓ 10 callersMethodsetupTree
()
src/figtree/treeviewer/TreePane.java:97
↓ 9 callersMethodaddPainterListener
(PainterListener listener)
src/figtree/treeviewer/painters/Painter.java:94
↓ 9 callersMethodaddTreeViewerListener
(TreeViewerListener listener)
src/figtree/treeviewer/TreeViewer.java:169
↓ 9 callersMethodcalibrate
()
src/figtree/treeviewer/ScaleAxis.java:281
↓ 9 callersMethodcheckTrue
(boolean condition, String property, String msg)
packaging_tools/windows/launch4j/src/net/sf/launch4j/binding/Validator.java:204
↓ 9 callersMethodclearSelection
()
src/figtree/treeviewer/TreePane.java:709
↓ 9 callersMethodgetAngle
The angle in degrees given by a 0, 1 proportion of the circle @param y @return
src/figtree/treeviewer/treelayouts/PolarTreeLayout.java:761
↓ 9 callersMethodgetBranchPath
(Node node)
src/figtree/treeviewer/treelayouts/TreeLayoutCache.java:50
↓ 9 callersMethodgetSelectedColor
()
src/figtree/ui/components/ColorWellButton.java:60
↓ 9 callersFunctionloadBool
packaging_tools/windows/launch4j/head_src/head.c:240
↓ 9 callersMethodloadImage
Helper method to load an image file from the CLASSPATH @param imageName the package and name of the file to load relative to the CLASSPATH @return an
packaging_tools/windows/launch4j/src/net/sf/launch4j/form/VersionInfoForm.java:97
↓ 9 callersMethodsetTreePane
Called when the painter is installed in a TreePane. Gives the painter a handle on the TreePane so that it get additional information. @param treePane
src/figtree/treeviewer/painters/Painter.java:64
↓ 8 callersMethodaddSelectedTip
(Node selectedTip)
src/figtree/treeviewer/TreePane.java:556
↓ 8 callersMethodaddTrue
(int id, boolean value)
packaging_tools/windows/launch4j/src/net/sf/launch4j/RcBuilder.java:316
↓ 8 callersMethodaddVerBlockValue
(String key, String value)
packaging_tools/windows/launch4j/src/net/sf/launch4j/RcBuilder.java:391
↓ 8 callersMethodcalculateTransform
(AffineTransform globalTransform, Line2D line, double width, do
src/figtree/treeviewer/TreePane.java:2273
↓ 8 callersMethodgetAttributeName
()
src/figtree/treeviewer/decorators/ColourDecorator.java:95
↓ 8 callersMethodgetEdgeLength
@param node1 @param node2 @return the length of the edge connecting node1 and node2. @throws jebl.evolution.graphs.Graph.NoEdgeException if t
src/figtree/treeviewer/ReRootedTree.java:401
↓ 8 callersMethodgetIntent
()
src/figtree/treeviewer/painters/LabelPainter.java:127
↓ 8 callersMethodgetJre
JRE configuration
packaging_tools/windows/launch4j/src/net/sf/launch4j/config/Config.java:283
↓ 8 callersMethodgetUpperValue
Returns the upper value in the range.
src/figtree/ui/components/RangeSlider.java:115
↓ 8 callersMethodgetValues
()
src/figtree/treeviewer/decorators/DiscreteColourDecorator.java:136
↓ 8 callersMethodloadImage
Helper method to load an image file from the CLASSPATH @param imageName the package and name of the file to load relative to the CLASSPATH @return an
packaging_tools/windows/launch4j/src/net/sf/launch4j/form/ClassPathForm.java:90
↓ 8 callersMethodremovePainterListener
(PainterListener listener)
src/figtree/treeviewer/painters/Painter.java:95
↓ 8 callersMethodsetMaximumFractionDigits
Sets the maximum number of digits allowed in the fraction portion of a number. maximumFractionDigits must be >= minimumFractionDigits. If the new val
src/figtree/ui/PercentFormat.java:104
↓ 8 callersMethodsetUpperValue
Sets the upper value in the range.
src/figtree/ui/components/RangeSlider.java:122
↓ 8 callersMethodsetupBranchDecorators
()
src/figtree/treeviewer/TreeAppearanceController.java:227
↓ 8 callersMethodtoString
()
src/figtree/application/GraphicFormat.java:47
↓ 8 callersMethodwarn
(String text)
packaging_tools/windows/launch4j/src/net/sf/launch4j/formimpl/MainFrame.java:172
↓ 7 callersMethodaddField
(WBoxLayout controlsLayout, String label, WFormWidget widget, AlignmentFlag alignment)
src/figtree/webui/FigTreeWebApplication.java:255
↓ 7 callersFunctionappendPath
packaging_tools/windows/launch4j/head_src/head.c:547
↓ 7 callersMethodcheckInvariants
()
packaging_tools/windows/launch4j/src/net/sf/launch4j/binding/IValidatable.java:43
↓ 7 callersMethodgetCurrentTreeIndex
()
src/figtree/treeviewer/TreeViewer.java:55
↓ 7 callersMethodgetPath
(File f)
packaging_tools/windows/launch4j/src/net/sf/launch4j/RcBuilder.java:379
↓ 7 callersMethodgetTree
()
src/figtree/treeviewer/painters/BasicLabelPainter.java:81
↓ 7 callersMethodisCommandKeyDown
On Mac, check for the 'Command' key, otherwise use the 'Control' key @param event @return is it pressed
src/figtree/treeviewer/TreePaneSelector.java:251
↓ 7 callersMethodloadImage
Helper method to load an image file from the CLASSPATH @param imageName the package and name of the file to load relative to the CLASSPATH @return an
packaging_tools/windows/launch4j/src/net/sf/launch4j/form/BasicForm.java:108
↓ 7 callersMethodloadImage
Helper method to load an image file from the CLASSPATH @param imageName the package and name of the file to load relative to the CLASSPATH @return an
packaging_tools/windows/launch4j/src/net/sf/launch4j/form/JreForm.java:103
↓ 7 callersMethodmatchesItem
(TextSearchType searchType, Object object, String query, boolean caseSensitive)
src/figtree/treeviewer/DefaultTreeViewer.java:379
↓ 7 callersMethodsetBranchOrdering
(SortedRootedTree.BranchOrdering branchOrdering)
src/figtree/treeviewer/TreePane.java:480
↓ 7 callersMethodsetColours
(Color color1, Color color2)
src/figtree/treeviewer/decorators/InterpolatingColourDecorator.java:70
↓ 7 callersMethodsetRootingOn
(boolean rootingOn)
src/figtree/treeviewer/TreePane.java:493
↓ 7 callersMethodsetRootingType
(RootingType rootingType)
src/figtree/treeviewer/TreePane.java:498
↓ 7 callersMethodshowDialog
()
src/figtree/application/ExportTreeDialog.java:102
↓ 7 callersMethodshowTree
(int index)
src/figtree/treeviewer/MultiPaneTreeViewer.java:151
↓ 7 callersFunctionsignalError
packaging_tools/windows/launch4j/head_src/head.c:168
↓ 7 callersMethodtoString
()
src/figtree/treeviewer/decorators/ContinuousScale.java:240
↓ 6 callersMethodaddButton
(String iconPath, String tooltip, ActionListener l)
packaging_tools/windows/launch4j/src/net/sf/launch4j/formimpl/MainFrame.java:155
↓ 6 callersMethodaddSelectedNode
(Node selectedNode)
src/figtree/treeviewer/TreePane.java:545
↓ 6 callersMethodadjustComponent
(JComponent comp)
src/figtree/treeviewer/FindPanel.java:191
↓ 6 callersMethodcheckFalse
(boolean condition, String property, String msg)
packaging_tools/windows/launch4j/src/net/sf/launch4j/binding/Validator.java:210
↓ 6 callersMethodcheckNull
(Object o, String name)
packaging_tools/windows/launch4j/src/net/sf/launch4j/ant/AntConfig.java:123
↓ 6 callersFunctioncloseLogFile
packaging_tools/windows/launch4j/head_src/head.c:98
↓ 6 callersMethodfindOption
(String label)
src/figtree/application/Arguments.java:525
↓ 6 callersMethodgetAbsoluteFile
(File basepath, File f)
packaging_tools/windows/launch4j/src/net/sf/launch4j/Util.java:106
↓ 6 callersMethodgetAdjacencies
@param node @return the set of nodes that are attached by edges to the given node.
src/figtree/treeviewer/ReRootedTree.java:371
↓ 6 callersMethodgetBinding
(String property)
packaging_tools/windows/launch4j/src/net/sf/launch4j/formimpl/ConfigFormImpl.java:97
↓ 6 callersMethodgetClassPath
()
packaging_tools/windows/launch4j/src/net/sf/launch4j/config/Config.java:274
↓ 6 callersMethodgetColourDecorator
(JComboBox colourAttributeCombo, Decorator defaultDecorator)
src/figtree/treeviewer/AttributeColourController.java:137
↓ 6 callersMethodgetDecorator
()
src/figtree/treeviewer/ContinuousColourScaleDialog.java:229
↓ 6 callersMethodgetEdge
Returns the Edge that connects these two nodes @param node1 @param node2 @return the edge object. @throws jebl.evolution.graphs.Graph.NoEdgeException
src/figtree/treeviewer/ReRootedTree.java:384
↓ 6 callersMethodgetGraphics
()
src/figtree/webui/TreeWidget.java:34
↓ 6 callersMethodgetHeaderType
launch4j header file.
packaging_tools/windows/launch4j/src/net/sf/launch4j/config/Config.java:194
↓ 6 callersMethodgetMinorTickCount
Returns the number of minor tick marks within each major one By default all major ticks have the same number of minor ticks except the last which has
src/figtree/treeviewer/ScaleAxis.java:665
↓ 6 callersMethodgetOutfile
Output EXE file.
packaging_tools/windows/launch4j/src/net/sf/launch4j/config/Config.java:292
↓ 6 callersMethodgetSettings
(Map<String, Object> settings)
src/figtree/panel/TreesController.java:192
↓ 6 callersMethodgetSplash
Splash screen configuration.
packaging_tools/windows/launch4j/src/net/sf/launch4j/config/Config.java:301
↓ 6 callersMethodgetType
()
src/figtree/treeviewer/annotations/AnnotationDefinition.java:88
↓ 6 callersMethodgetValue
(RealNumberField field, double defaultValue)
src/figtree/treeviewer/TimeScaleController.java:145
↓ 6 callersMethodgetVersionInfo
()
packaging_tools/windows/launch4j/src/net/sf/launch4j/config/Config.java:327
↓ 6 callersFunctionregSearch
packaging_tools/windows/launch4j/head_src/head.c:312
↓ 6 callersMethodsetBranchColouringAttributeName
(String colouringAttributeName)
src/figtree/treeviewer/treelayouts/TreeLayout.java:126
↓ 6 callersMethodsetForeground
(Paint foreground)
src/figtree/treeviewer/painters/NodePainter.java:87
↓ 6 callersMethodsetRunEnabled
(boolean enabled)
packaging_tools/windows/launch4j/src/net/sf/launch4j/formimpl/MainFrame.java:233
↓ 6 callersMethodsetScaleBarStroke
(BasicStroke scaleBarStroke)
src/figtree/treeviewer/painters/ScaleBarPainter.java:168
↓ 6 callersMethodsetSelectedColor
(Color color)
src/figtree/ui/components/ColorWellButton.java:64
↓ 6 callersMethodsetSelectedFont
Initializes the contents of the dialog from the given font object. @param font the font from which to read the properties.
src/figtree/ui/FontChooserPanel.java:172
↓ 6 callersMethodsetSize
(Dimension dimension)
src/figtree/treeviewer/TreePane.java:2338
↓ 6 callersMethodsetTransformBranchesOn
(boolean transformBranchesOn)
src/figtree/treeviewer/TreePane.java:453
↓ 6 callersMethodwrite
(int b)
packaging_tools/windows/launch4j/src/net/sf/launch4j/KanjiEscapeOutputStream.java:55
↓ 5 callersMethodaddInteger
(int id, Integer value)
packaging_tools/windows/launch4j/src/net/sf/launch4j/RcBuilder.java:322
↓ 5 callersMethodaddOptComponent
Add an optional (nullable) Java Bean component of type clazz.
packaging_tools/windows/launch4j/src/net/sf/launch4j/binding/Bindings.java:217
↓ 5 callersMethodaddSelectedClade
(Node selectedNode)
src/figtree/treeviewer/TreePane.java:569
↓ 5 callersMethodadjustComponent
(JComponent comp)
src/figtree/ui/FontChooserPanel.java:198
↓ 5 callersMethodallowsGradient
()
src/figtree/treeviewer/decorators/Decorator.java:41
↓ 5 callersMethodcopyOf
(boolean[] s, boolean[] d)
src/figtree/treeviewer/Parsimony.java:232
↓ 5 callersMethodexportTrees
(Collection<? extends Tree> trees)
src/figtree/application/JSONTreeExporter.java:180
↓ 5 callersMethodfirePainterSettingsChanged
()
src/figtree/treeviewer/painters/AbstractPainter.java:51
↓ 5 callersMethodfireStatusChanged
(int status, String statusText)
src/figtree/treeviewer/ExtendedTreeViewer.java:238
↓ 5 callersMethodgetColourForValue
(Object value)
src/figtree/treeviewer/decorators/ColourDecorator.java:234
↓ 5 callersMethodgetConfigPath
()
packaging_tools/windows/launch4j/src/net/sf/launch4j/config/ConfigPersister.java:96
↓ 5 callersMethodgetScaleFactor
(RootedTree tree)
src/figtree/treeviewer/TimeScale.java:51
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