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Functions427 in github.com/dhammack/DSB2017

⨍ Functions 427◇ Types & classes 1
↓ 1 callersFunctionrandom_perturb
(Xbatch,rotate=False)
training_code/aws/score_ensemble2_final.py:19
↓ 1 callersFunctionrandom_perturb
(Xbatch)
training_code/aws/nodule_des_v37b.py:89
↓ 1 callersFunctionrandom_perturb
(Xbatch)
training_code/aws/nodule_des_v37d_part3.py:91
↓ 1 callersFunctionrandom_perturb
(Xbatch)
training_code/aws/nodule_des_v37g.py:92
↓ 1 callersFunctionrandom_perturb
(Xbatch)
training_code/DLung/build_luna_model_v29.py:107
↓ 1 callersFunctionrandom_perturb
(Xbatch)
training_code/DLung/build_nodule_describer_v34.py:151
↓ 1 callersFunctionrandom_perturb
(Xbatch)
training_code/FLung_nodule_models/nodule_clf_v1.py:113
↓ 1 callersFunctionrandom_perturb
(Xbatch)
training_code/FLung_nodule_models/build_luna_model_v29.py:107
↓ 1 callersFunctionrandom_perturb
(Xbatch,rotate=False)
scoring_code/score_ensemble2_final.py:19
↓ 1 callersFunctionresample
(image, scan, new_spacing=[1,1,1])
scoring_code/preprocess.py:65
↓ 1 callersFunctionrough_malig_score
(preds,diam_ix=0,lob_ix=1,malig_ix=3)
training_code/FLung_nodule_models/create_nodules_from_modelv29.py:207
↓ 1 callersFunctionrough_malig_score
(preds,diam_ix=0,lob_ix=1,malig_ix=3)
scoring_code/create_nodules_from_modelv29.py:200
↓ 1 callersFunctionrun_validation
(model, valid_generator, nb_batches,batch_size)
training_code/FLung_nodule_models/nodule_clf_v1.py:222
↓ 1 callersFunctionsample_random_candidates
(id, df, n_sample,VOXEL_SIZE, dfcandidates,img, origin, spacing,rotate=True)
training_code/aws/data_generator_fn3.py:137
↓ 1 callersFunctionscore_model
(modelpath,name)
training_code/aws/score_ensemble2_final.py:101
↓ 1 callersFunctionscore_model
(modelpath,name)
scoring_code/score_ensemble2_final.py:101
↓ 1 callersFunctiontrain_model_on_stage
(stage,model,fast_start=False,split=True,fine_tune=False)
training_code/aws/nodule_des_v37d_part2.py:208
↓ 1 callersFunctiontrain_model_on_stage
(stage,model,fast_start=False,split=True,fine_tune=False)
training_code/aws/nodule_des_v37d_part3.py:207
↓ 1 callersFunctiontrain_model_on_stage
(stage,model,fast_start=False,split=True,fine_tune=False)
training_code/FLung_nodule_models/nodule_clf_v1.py:244
Method__init__
(self,C=10,step_size=0.7)
scoring_code/create_preds_from_model_outputs.py:8
Functionaggregate_predictions_for_patient
(preds)
training_code/FLung_descriptor models/score_ensemble1_from_v29_candidates.py:18
Functionaggregate_predictions_for_patient
(preds)
training_code/aws/score_ensemble2_final.py:15
Functionaggregate_predictions_for_patient
(preds)
scoring_code/score_ensemble2_final.py:15
Functionaggregate_predictions_for_patient
(preds)
scoring_code/score_ensemble1_from_v29_candidates.py:18
Functionaggregate_tta_preds
(preds)
training_code/FLung_nodule_models/create_nodules_from_modelv29.py:210
Functionaggregate_tta_preds
(preds)
scoring_code/create_nodules_from_modelv29.py:203
Functionbuild_model
(input_shape)
training_code/FLung_nodule_models/nodule_clf_v1.py:68
Functiondense_branch
(xstart, name, outsize=1,activation='sigmoid')
training_code/FLung_descriptor models/malig_only_v35_relu_newschedule.py:60
Functiondense_branch
(xstart, name, outsize=1,activation='sigmoid')
training_code/FLung_descriptor models/nodule_des_v37c.py:29
Functiondense_branch
(xstart, name, outsize=1,activation='sigmoid')
training_code/FLung_descriptor models/malig_only_v35_relu_b32.py:60
Functiondense_branch
(xstart, name, outsize=1,activation='sigmoid')
training_code/FLung_descriptor models/nodule_des_v36.py:60
Functiondense_branch
(xstart, name, outsize=1,activation='sigmoid')
training_code/FLung_descriptor models/malig_only_v35_relu_sigmoid.py:60
Functiondense_branch
(xstart, name, outsize=1,activation='sigmoid')
training_code/FLung_descriptor models/nodule_des_v37.py:60
Functiondense_branch
(xstart, name, outsize=1,activation='sigmoid')
training_code/FLung_descriptor models/malig_only_v35_relu_multiobj.py:60
Functiondense_branch
(xstart, name, outsize=1,activation='sigmoid')
training_code/aws/nodule_des_v38.py:24
Functiondense_branch
(xstart, name, outsize=1,activation='sigmoid')
training_code/aws/nodule_des_v37d_part2.py:27
Functiondense_branch
(xstart, name, outsize=1,activation='sigmoid')
training_code/aws/nodule_des_v37d_part1.py:26
Functiondense_branch
(xstart, name, outsize=1,activation='sigmoid')
training_code/aws/nodule_des_v37f.py:27
Functiondense_branch
(xstart, name, outsize=1,activation='sigmoid')
training_code/aws/nodule_des_v37b.py:24
Functiondense_branch
(xstart, name, outsize=1,activation='sigmoid')
training_code/aws/nodule_des_v37d_part3.py:26
Functiondense_branch
(xstart, name, outsize=1,activation='sigmoid')
training_code/aws/nodule_des_v37g.py:27
Functiondense_branch
(xstart, name, outsize=1,activation='sigmoid')
training_code/FLung_nodule_models/nodule_clf_v1.py:60
Functionfine_tune_lr_schedule
(i)
training_code/FLung_descriptor models/nodule_des_v37c.py:170
Functionfine_tune_lr_schedule
(i)
training_code/FLung_descriptor models/nodule_des_v36.py:201
Functionfine_tune_lr_schedule
(i)
training_code/FLung_descriptor models/nodule_des_v37.py:201
Functionfine_tune_lr_schedule
(i)
training_code/aws/nodule_des_v38.py:165
Functionfine_tune_lr_schedule
(i)
training_code/aws/nodule_des_v37d_part2.py:168
Functionfine_tune_lr_schedule
(i)
training_code/aws/nodule_des_v37d_part1.py:167
Functionfine_tune_lr_schedule
(i)
training_code/aws/nodule_des_v37f.py:168
Functionfine_tune_lr_schedule
(i)
training_code/aws/nodule_des_v37b.py:165
Functionfine_tune_lr_schedule
(i)
training_code/aws/nodule_des_v37d_part3.py:167
Functionfine_tune_lr_schedule
(i)
training_code/aws/nodule_des_v37g.py:168
Functionfine_tune_lr_schedule
(i)
training_code/FLung_nodule_models/nodule_clf_v1.py:185
Functionget_Xnegative
(VOXEL_SIZE)
training_code/FLung_descriptor models/data_generator_fn.py:378
Functionget_Xnegative
(VOXEL_SIZE)
training_code/DLung/data_generator_fn.py:369
Functionget_Xnegative
(VOXEL_SIZE)
training_code/FLung_nodule_models/data_generator_fn2.py:330
Functionget_Xnegative
(VOXEL_SIZE)
training_code/FLung_nodule_models/data_generator_fn.py:378
Functionget_Xnegative_new
(VOXEL_SIZE,multiplier=12,fp_only=True)
training_code/aws/data_generator_fn3.py:252
Functionget_Xpositive_new
(VOXEL_SIZE)
training_code/aws/data_generator_fn3.py:238
Functionget_Xpositive_old
(VOXEL_SIZE)
training_code/FLung_descriptor models/data_generator_fn2_des.py:304
Functionget_Xpositive_old
(VOXEL_SIZE)
training_code/FLung_descriptor models/data_generator_fn.py:352
Functionget_Xpositive_old
(VOXEL_SIZE)
training_code/DLung/data_generator_fn.py:343
Functionget_Xpositive_old
(VOXEL_SIZE)
training_code/FLung_nodule_models/data_generator_fn2.py:304
Functionget_Xpositive_old
(VOXEL_SIZE)
training_code/FLung_nodule_models/data_generator_fn.py:352
Functionget_bounding_voxels_new
(patient, df, n,VOXEL_SIZE,rotate=False)
training_code/FLung_descriptor models/data_generator_fn2_des.py:41
Functionget_bounding_voxels_new
(patient, df, n,VOXEL_SIZE,rotate=False)
training_code/FLung_descriptor models/data_generator_fn.py:94
Functionget_bounding_voxels_new
(patient, df, n,VOXEL_SIZE)
training_code/DLung/data_generator_fn.py:94
Functionget_bounding_voxels_new
(patient, df, n,VOXEL_SIZE,rotate=False)
training_code/FLung_nodule_models/data_generator_fn2.py:41
Functionget_bounding_voxels_new
(patient, df, n,VOXEL_SIZE,rotate=False)
training_code/FLung_nodule_models/data_generator_fn.py:94
Functionget_bounding_voxels_old
(rowix, df, n,VOXEL_SIZE)
training_code/FLung_descriptor models/data_generator_fn.py:40
Functionget_bounding_voxels_old
(rowix, df, n,VOXEL_SIZE)
training_code/DLung/data_generator_fn.py:40
Functionget_bounding_voxels_old
(rowix, df, n,VOXEL_SIZE)
training_code/FLung_nodule_models/data_generator_fn.py:40
Functionget_data
(df, ix)
training_code/FLung_descriptor models/data_generator_fn2_des.py:301
Functionget_data
(df, ix)
training_code/FLung_descriptor models/data_generator_fn.py:349
Functionget_data
(df, ix)
training_code/aws/data_generator_fn3.py:234
Functionget_data
(df, ix)
training_code/DLung/data_generator_fn.py:340
Functionget_data
(df, ix)
training_code/FLung_nodule_models/data_generator_fn2.py:301
Functionget_data
(df, ix)
training_code/FLung_nodule_models/data_generator_fn.py:349
Functionget_fuzzed_loc_view
(img, center,VOXEL_SIZE)
training_code/FLung_nodule_models/create_nodules_from_modelv29.py:106
Functionget_fuzzed_loc_view
(img, center,VOXEL_SIZE)
scoring_code/create_nodules_from_modelv29.py:106
Functionget_fuzzed_view
(img, center, n_view,VOXEL_SIZE)
training_code/FLung_nodule_models/create_nodules_from_modelv29.py:89
Functionget_fuzzed_view
(img, center, n_view,VOXEL_SIZE)
scoring_code/create_nodules_from_modelv29.py:89
Functionget_location_features
(centroid,img_shape)
training_code/FLung_nodule_models/create_nodules_from_modelv29.py:123
Functionget_location_features
(centroid,img_shape)
scoring_code/create_nodules_from_modelv29.py:123
Functionget_subvox_at
(img, center,size=64)
training_code/FLung_nodule_models/create_nodules_from_modelv29.py:134
Functionget_subvox_at
(img, center,size=64)
scoring_code/create_nodules_from_modelv29.py:134
Functionget_target
(file)
training_code/FLung_descriptor models/score_ensemble1_from_v29_candidates.py:15
Functionget_target
(file)
training_code/aws/score_ensemble2_final.py:12
Functionget_target
(file)
training_code/FLung_nodule_models/create_nodules_from_modelv29.py:195
Functionget_target
(file)
scoring_code/score_ensemble2_final.py:12
Functionget_target
(file)
scoring_code/score_ensemble1_from_v29_candidates.py:15
Functionget_target_for
(patient,tgt_lookup)
training_code/FLung_descriptor models/data_generator_fn2_des.py:16
Functionget_target_for
(patient,tgt_lookup)
training_code/FLung_descriptor models/data_generator_fn.py:16
Functionget_target_for
(patient,tgt_lookup)
training_code/aws/data_generator_fn3.py:16
Functionget_target_for
(patient,tgt_lookup)
training_code/DLung/data_generator_fn.py:16
Functionget_target_for
(patient,tgt_lookup)
training_code/FLung_nodule_models/data_generator_fn2.py:16
Functionget_target_for
(patient,tgt_lookup)
training_code/FLung_nodule_models/data_generator_fn.py:16
Functionget_target_for
(patient,tgt_lookup)
scoring_code/preprocess.py:89
FunctionleakyCReLU
(x)
training_code/FLung_descriptor models/malig_only_v35_relu_newschedule.py:25
FunctionleakyCReLU
(x)
training_code/FLung_descriptor models/malig_only_v35_relu_b32.py:25
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