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Functions427 in github.com/dhammack/DSB2017

⨍ Functions 427◇ Types & classes 1
↓ 2 callersFunctionbuild_model
(input_shape)
training_code/FLung_nodule_models/build_luna_model_v29.py:33
↓ 2 callersFunctionrandom_perturb
(Xbatch,rotate=False)
training_code/FLung_descriptor models/score_ensemble1_from_v29_candidates.py:22
↓ 2 callersFunctionrandom_perturb
(Xbatch,rotate=False)
scoring_code/score_ensemble1_from_v29_candidates.py:22
↓ 2 callersFunctionresize_voxel
(x, desired_shape)
training_code/aws/data_generator_fn3.py:34
↓ 2 callersFunctiontrain_model_on_stage
(stage,model,fast_start=False)
training_code/FLung_descriptor models/malig_only_v35_relu_newschedule.py:229
↓ 2 callersFunctiontrain_model_on_stage
(stage,model,fast_start=False,split=True,fine_tune=False)
training_code/FLung_descriptor models/nodule_des_v37c.py:209
↓ 2 callersFunctiontrain_model_on_stage
(stage,model,fast_start=False)
training_code/FLung_descriptor models/malig_only_v35_relu_b32.py:256
↓ 2 callersFunctiontrain_model_on_stage
(stage,model,fast_start=False,split=True,fine_tune=False)
training_code/FLung_descriptor models/nodule_des_v36.py:239
↓ 2 callersFunctiontrain_model_on_stage
(stage,model,fast_start=False)
training_code/FLung_descriptor models/malig_only_v35_relu_sigmoid.py:229
↓ 2 callersFunctiontrain_model_on_stage
(stage,model,fast_start=False,split=True,fine_tune=False)
training_code/FLung_descriptor models/nodule_des_v37.py:239
↓ 2 callersFunctiontrain_model_on_stage
(stage,model,fast_start=False)
training_code/FLung_descriptor models/malig_only_v35_relu_multiobj.py:248
↓ 2 callersFunctiontrain_model_on_stage
(stage,model,fast_start=False)
training_code/FLung_descriptor models/multi_output_v35_branch.py:300
↓ 2 callersFunctiontrain_model_on_stage
(stage,model,fast_start=False)
training_code/FLung_descriptor models/build_nodule_describer_v34_replicate.py:280
↓ 2 callersFunctiontrain_model_on_stage
(stage,model,fast_start=False,split=True,fine_tune=False)
training_code/aws/nodule_des_v38.py:203
↓ 2 callersFunctiontrain_model_on_stage
(stage,model,fast_start=False,split=True,fine_tune=False)
training_code/aws/nodule_des_v37d_part1.py:207
↓ 2 callersFunctiontrain_model_on_stage
(stage,model,fast_start=False,split=True,fine_tune=False)
training_code/aws/nodule_des_v37f.py:208
↓ 2 callersFunctiontrain_model_on_stage
(stage,model,fast_start=False,split=True,fine_tune=False)
training_code/aws/nodule_des_v37b.py:203
↓ 2 callersFunctiontrain_model_on_stage
(stage,model,fast_start=False,split=True,fine_tune=False)
training_code/aws/nodule_des_v37g.py:208
↓ 2 callersFunctiontrain_model_on_stage
(stage,model,fast_start=False)
training_code/DLung/build_luna_model_v29.py:283
↓ 2 callersFunctiontrain_model_on_stage
(stage,model,fast_start=False)
training_code/DLung/build_nodule_describer_v34.py:280
↓ 2 callersFunctiontrain_model_on_stage
(stage,model,fast_start=False)
training_code/FLung_nodule_models/build_luna_model_v29.py:283
↓ 1 callersFunctioncrop_img
(img_cpy)
training_code/aws/score_ident_model_v1_stage2.py:38
↓ 1 callersFunctioncrop_img
(img_cpy)
training_code/FLung_nodule_models/score_ident_model_v1.py:38
↓ 1 callersFunctioncrop_img
(img_cpy)
scoring_code/score_ident_model_v1_stage2.py:38
↓ 1 callersFunctionget_Xnegative_new
(VOXEL_SIZE,multiplier=12,fp_only=True)
training_code/FLung_descriptor models/data_generator_fn2_des.py:331
↓ 1 callersFunctionget_Xnegative_new
(VOXEL_SIZE,multiplier=12,fp_only=True)
training_code/FLung_descriptor models/data_generator_fn.py:391
↓ 1 callersFunctionget_Xnegative_new
(VOXEL_SIZE)
training_code/DLung/data_generator_fn.py:382
↓ 1 callersFunctionget_Xnegative_new
(VOXEL_SIZE,multiplier=12,fp_only=True)
training_code/FLung_nodule_models/data_generator_fn2.py:343
↓ 1 callersFunctionget_Xnegative_new
(VOXEL_SIZE,multiplier=12,fp_only=True)
training_code/FLung_nodule_models/data_generator_fn.py:391
↓ 1 callersFunctionget_Xpositive_new
(VOXEL_SIZE)
training_code/FLung_descriptor models/data_generator_fn2_des.py:317
↓ 1 callersFunctionget_Xpositive_new
(VOXEL_SIZE)
training_code/FLung_descriptor models/data_generator_fn.py:365
↓ 1 callersFunctionget_Xpositive_new
(VOXEL_SIZE)
training_code/DLung/data_generator_fn.py:356
↓ 1 callersFunctionget_Xpositive_new
(VOXEL_SIZE)
training_code/FLung_nodule_models/data_generator_fn2.py:317
↓ 1 callersFunctionget_Xpositive_new
(VOXEL_SIZE)
training_code/FLung_nodule_models/data_generator_fn.py:365
↓ 1 callersFunctionget_batch_size_for_stage
(stage)
training_code/FLung_descriptor models/malig_only_v35_relu_newschedule.py:209
↓ 1 callersFunctionget_batch_size_for_stage
(stage)
training_code/FLung_descriptor models/nodule_des_v37c.py:188
↓ 1 callersFunctionget_batch_size_for_stage
(stage)
training_code/FLung_descriptor models/malig_only_v35_relu_b32.py:234
↓ 1 callersFunctionget_batch_size_for_stage
(stage)
training_code/FLung_descriptor models/nodule_des_v36.py:219
↓ 1 callersFunctionget_batch_size_for_stage
(stage)
training_code/FLung_descriptor models/malig_only_v35_relu_sigmoid.py:209
↓ 1 callersFunctionget_batch_size_for_stage
(stage)
training_code/FLung_descriptor models/nodule_des_v37.py:219
↓ 1 callersFunctionget_batch_size_for_stage
(stage)
training_code/FLung_descriptor models/malig_only_v35_relu_multiobj.py:228
↓ 1 callersFunctionget_batch_size_for_stage
(stage)
training_code/FLung_descriptor models/multi_output_v35_branch.py:280
↓ 1 callersFunctionget_batch_size_for_stage
(stage)
training_code/FLung_descriptor models/build_nodule_describer_v34_replicate.py:260
↓ 1 callersFunctionget_batch_size_for_stage
(stage)
training_code/aws/nodule_des_v38.py:183
↓ 1 callersFunctionget_batch_size_for_stage
(stage)
training_code/aws/nodule_des_v37d_part2.py:188
↓ 1 callersFunctionget_batch_size_for_stage
(stage)
training_code/aws/nodule_des_v37d_part1.py:187
↓ 1 callersFunctionget_batch_size_for_stage
(stage)
training_code/aws/nodule_des_v37f.py:188
↓ 1 callersFunctionget_batch_size_for_stage
(stage)
training_code/aws/nodule_des_v37b.py:183
↓ 1 callersFunctionget_batch_size_for_stage
(stage)
training_code/aws/nodule_des_v37d_part3.py:187
↓ 1 callersFunctionget_batch_size_for_stage
(stage)
training_code/aws/nodule_des_v37g.py:188
↓ 1 callersFunctionget_batch_size_for_stage
(stage)
training_code/DLung/build_luna_model_v29.py:263
↓ 1 callersFunctionget_batch_size_for_stage
(stage)
training_code/DLung/build_nodule_describer_v34.py:260
↓ 1 callersFunctionget_batch_size_for_stage
(stage)
training_code/FLung_nodule_models/nodule_clf_v1.py:203
↓ 1 callersFunctionget_batch_size_for_stage
(stage)
training_code/FLung_nodule_models/build_luna_model_v29.py:263
↓ 1 callersFunctionget_both
(VOXEL_SIZE, n_neg, n_pos)
training_code/aws/data_generator_fn3.py:266
↓ 1 callersFunctionget_bounding_voxels_new
(patient, df, n,VOXEL_SIZE,img,origin,spacing,rotate=True)
training_code/aws/data_generator_fn3.py:41
↓ 1 callersFunctionget_interesting_ixs
(preds,thresh=1.5,max_ct=50)
training_code/aws/score_ident_model_v1_stage2.py:182
↓ 1 callersFunctionget_interesting_ixs
(preds)
training_code/FLung_nodule_models/create_nodules_from_modelv29.py:138
↓ 1 callersFunctionget_interesting_ixs
(preds,thresh=1.5,max_ct=50)
training_code/FLung_nodule_models/score_ident_model_v1.py:182
↓ 1 callersFunctionget_interesting_ixs
(preds,thresh=1.5,max_ct=50)
scoring_code/score_ident_model_v1_stage2.py:182
↓ 1 callersFunctionget_interesting_ixs
(preds)
scoring_code/create_nodules_from_modelv29.py:138
↓ 1 callersFunctionget_loc_features
(locs, malig_scores, sizes)
training_code/FLung_descriptor models/score_ensemble1_from_v29_candidates.py:39
↓ 1 callersFunctionget_loc_features
(locs, malig_scores, sizes)
training_code/aws/score_ensemble2_final.py:36
↓ 1 callersFunctionget_loc_features
(locs, malig_scores, sizes)
scoring_code/score_ensemble2_final.py:36
↓ 1 callersFunctionget_loc_features
(locs, malig_scores, sizes)
scoring_code/score_ensemble1_from_v29_candidates.py:39
↓ 1 callersFunctionget_pixels_hu
(scans)
scoring_code/preprocess.py:50
↓ 1 callersFunctionimg_to_vox
(img,VOXEL_SIZE,mask)
training_code/aws/score_ident_model_v1_stage2.py:135
↓ 1 callersFunctionimg_to_vox
(img,VOXEL_SIZE)
training_code/FLung_nodule_models/create_nodules_from_modelv29.py:46
↓ 1 callersFunctionimg_to_vox
(img,VOXEL_SIZE,mask)
training_code/FLung_nodule_models/score_ident_model_v1.py:135
↓ 1 callersFunctionimg_to_vox
(img,VOXEL_SIZE,mask)
scoring_code/score_ident_model_v1_stage2.py:135
↓ 1 callersFunctionimg_to_vox
(img,VOXEL_SIZE)
scoring_code/create_nodules_from_modelv29.py:46
↓ 1 callersFunctionload_and_txform_file
(file,model,VOXEL_SIZE,batch_size,n_TTA=32)
training_code/aws/score_ident_model_v1_stage2.py:201
↓ 1 callersFunctionload_and_txform_file
(file,model,VOXEL_SIZE,batch_size)
training_code/FLung_nodule_models/create_nodules_from_modelv29.py:156
↓ 1 callersFunctionload_and_txform_file
(file,model,VOXEL_SIZE,batch_size,n_TTA=32)
training_code/FLung_nodule_models/score_ident_model_v1.py:201
↓ 1 callersFunctionload_and_txform_file
(file,model,VOXEL_SIZE,batch_size,n_TTA=32)
scoring_code/score_ident_model_v1_stage2.py:201
↓ 1 callersFunctionload_and_txform_file
(file,model,VOXEL_SIZE,batch_size)
scoring_code/create_nodules_from_modelv29.py:156
↓ 1 callersFunctionload_itk_image
(filename)
training_code/aws/data_generator_fn3.py:22
↓ 1 callersFunctionload_scan
(path)
scoring_code/preprocess.py:14
↓ 1 callersFunctionprocess_ens1_sg1
(labels)
scoring_code/create_preds_from_model_outputs.py:99
↓ 1 callersFunctionprocess_ens1_sg2
(ens1_model, ens1_cols)
scoring_code/create_preds_from_model_outputs.py:159
↓ 1 callersFunctionprocess_ens2_sg1
(names,labels)
scoring_code/create_preds_from_model_outputs.py:35
↓ 1 callersFunctionprocess_ens2_sg2
(names, ens2_models, ens2_columns)
scoring_code/create_preds_from_model_outputs.py:132
↓ 1 callersFunctionprocess_jul
()
scoring_code/create_preds_from_model_outputs.py:176
↓ 1 callersFunctionprocess_voxels
(voxels, locs, sizes)
training_code/FLung_descriptor models/score_ensemble1_from_v29_candidates.py:77
↓ 1 callersFunctionprocess_voxels
(model, voxels, locs, sizes)
training_code/aws/score_ensemble2_final.py:74
↓ 1 callersFunctionprocess_voxels
(model, voxels, locs, sizes)
scoring_code/score_ensemble2_final.py:74
↓ 1 callersFunctionprocess_voxels
(voxels, locs, sizes)
scoring_code/score_ensemble1_from_v29_candidates.py:77
↓ 1 callersFunctionrandom_perturb
(Xbatch)
training_code/FLung_descriptor models/malig_only_v35_relu_newschedule.py:115
↓ 1 callersFunctionrandom_perturb
(Xbatch)
training_code/FLung_descriptor models/nodule_des_v37c.py:94
↓ 1 callersFunctionrandom_perturb
(Xbatch)
training_code/FLung_descriptor models/malig_only_v35_relu_b32.py:122
↓ 1 callersFunctionrandom_perturb
(Xbatch)
training_code/FLung_descriptor models/nodule_des_v36.py:125
↓ 1 callersFunctionrandom_perturb
(Xbatch)
training_code/FLung_descriptor models/malig_only_v35_relu_sigmoid.py:115
↓ 1 callersFunctionrandom_perturb
(Xbatch)
training_code/FLung_descriptor models/nodule_des_v37.py:125
↓ 1 callersFunctionrandom_perturb
(Xbatch)
training_code/FLung_descriptor models/malig_only_v35_relu_multiobj.py:120
↓ 1 callersFunctionrandom_perturb
(Xbatch)
training_code/FLung_descriptor models/multi_output_v35_branch.py:170
↓ 1 callersFunctionrandom_perturb
(Xbatch)
training_code/FLung_descriptor models/build_nodule_describer_v34_replicate.py:151
↓ 1 callersFunctionrandom_perturb
(Xbatch)
training_code/aws/nodule_des_v38.py:89
↓ 1 callersFunctionrandom_perturb
(Xbatch)
training_code/aws/nodule_des_v37d_part2.py:92
↓ 1 callersFunctionrandom_perturb
(Xbatch)
training_code/aws/nodule_des_v37d_part1.py:91
↓ 1 callersFunctionrandom_perturb
(Xbatch)
training_code/aws/nodule_des_v37f.py:92
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