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Functions427 in github.com/dhammack/DSB2017

⨍ Functions 427◇ Types & classes 1
↓ 15 callersMethodpredict
(self, X)
scoring_code/create_preds_from_model_outputs.py:31
↓ 14 callersFunctionconv_block
(x_input, num_filters,pool=True,activation='relu',init='orthogonal')
training_code/FLung_descriptor models/multi_output_v35_branch.py:35
↓ 14 callersFunctionconv_block
(x_input, num_filters,pool=True,activation='relu',init='orthogonal')
training_code/FLung_descriptor models/build_nodule_describer_v34_replicate.py:35
↓ 14 callersFunctionconv_block
(x_input, num_filters,pool=True,activation='relu',init='orthogonal')
training_code/DLung/build_nodule_describer_v34.py:35
↓ 10 callersMethodfit
(self, X, y)
scoring_code/create_preds_from_model_outputs.py:14
↓ 8 callersFunctionconv_block
(x_input, num_filters,pool=True,activation='relu',init='orthogonal')
training_code/FLung_descriptor models/nodule_des_v37c.py:2
↓ 8 callersFunctionconv_block
(x_input, num_filters,pool=True,activation='relu',init='orthogonal')
training_code/FLung_descriptor models/nodule_des_v36.py:35
↓ 8 callersFunctionconv_block
(x_input, num_filters,pool=True,activation='relu',init='orthogonal')
training_code/FLung_descriptor models/nodule_des_v37.py:35
↓ 8 callersFunctionconv_block
(x_input, num_filters,pool=True,activation='relu',init='orthogonal')
training_code/aws/nodule_des_v38.py:2
↓ 8 callersFunctionconv_block
(x_input, num_filters,pool=True,activation='relu',init='orthogonal')
training_code/aws/nodule_des_v37d_part2.py:2
↓ 8 callersFunctionconv_block
(x_input, num_filters,pool=True,activation='relu',init='orthogonal')
training_code/aws/nodule_des_v37d_part1.py:2
↓ 8 callersFunctionconv_block
(x_input, num_filters,pool=True,activation='relu',init='orthogonal',double=False)
training_code/aws/nodule_des_v37f.py:2
↓ 8 callersFunctionconv_block
(x_input, num_filters,pool=True,activation='relu',init='orthogonal')
training_code/aws/nodule_des_v37b.py:2
↓ 8 callersFunctionconv_block
(x_input, num_filters,pool=True,activation='relu',init='orthogonal')
training_code/aws/nodule_des_v37d_part3.py:2
↓ 8 callersFunctionconv_block
(x_input, num_filters,pool=True,activation='relu',init='orthogonal',double=False)
training_code/aws/nodule_des_v37g.py:2
↓ 8 callersMethodpredict_proba
(self, X)
scoring_code/create_preds_from_model_outputs.py:25
↓ 7 callersFunctionget_generator_static
(X1,IX1,X2,IX2,batch_size,augment=True)
training_code/FLung_descriptor models/nodule_des_v37c.py:109
↓ 7 callersFunctionget_generator_static
(X1,IX1,X2,IX2,batch_size,augment=True)
training_code/FLung_descriptor models/nodule_des_v37.py:140
↓ 7 callersFunctionget_generator_static
(X1,IX1,X2,IX2,batch_size,augment=True)
training_code/aws/nodule_des_v38.py:104
↓ 7 callersFunctionget_generator_static
(X1,IX1,X2,IX2,batch_size,augment=True)
training_code/aws/nodule_des_v37d_part2.py:107
↓ 7 callersFunctionget_generator_static
(X1,IX1,X2,IX2,batch_size,augment=True)
training_code/aws/nodule_des_v37d_part1.py:106
↓ 7 callersFunctionget_generator_static
(X1,IX1,X2,IX2,batch_size,augment=True)
training_code/aws/nodule_des_v37f.py:107
↓ 7 callersFunctionget_generator_static
(X1,IX1,X2,IX2,batch_size,augment=True)
training_code/aws/nodule_des_v37b.py:104
↓ 7 callersFunctionget_generator_static
(X1,IX1,X2,IX2,batch_size,augment=True)
training_code/aws/nodule_des_v37d_part3.py:106
↓ 7 callersFunctionget_generator_static
(X1,IX1,X2,IX2,batch_size,augment=True)
training_code/aws/nodule_des_v37g.py:107
↓ 7 callersFunctionget_generator_static
(X1,IX1,X2,IX2,batch_size,augment=True)
training_code/FLung_nodule_models/nodule_clf_v1.py:128
↓ 6 callersFunctiondense_branch
(xstart, name, outsize=1,activation='sigmoid')
training_code/DLung/build_luna_model_v29.py:25
↓ 6 callersFunctiondense_branch
(xstart, name, outsize=1,activation='sigmoid')
training_code/FLung_nodule_models/build_luna_model_v29.py:25
↓ 6 callersFunctionfind_start
(arr, thresh=.5)
training_code/aws/score_ident_model_v1_stage2.py:8
↓ 6 callersFunctionfind_start
(arr, thresh=-800)
training_code/FLung_nodule_models/create_nodules_from_modelv29.py:6
↓ 6 callersFunctionfind_start
(arr, thresh=.5)
training_code/FLung_nodule_models/score_ident_model_v1.py:8
↓ 6 callersFunctionfind_start
(arr, thresh=.5)
scoring_code/score_ident_model_v1_stage2.py:8
↓ 6 callersFunctionfind_start
(arr, thresh=-800)
scoring_code/create_nodules_from_modelv29.py:6
↓ 6 callersFunctionget_generator_static
(X1,IX1,batch_size,augment=True)
training_code/FLung_descriptor models/malig_only_v35_relu_newschedule.py:129
↓ 6 callersFunctionget_generator_static
(X1,IX1,batch_size,augment=True)
training_code/FLung_descriptor models/malig_only_v35_relu_b32.py:136
↓ 6 callersFunctionget_generator_static
(X1,IX1,X2,IX2,batch_size,augment=True)
training_code/FLung_descriptor models/nodule_des_v36.py:140
↓ 6 callersFunctionget_generator_static
(X1,IX1,batch_size,augment=True)
training_code/FLung_descriptor models/malig_only_v35_relu_sigmoid.py:129
↓ 6 callersFunctionget_generator_static
(X1,IX1,batch_size,augment=True)
training_code/FLung_descriptor models/malig_only_v35_relu_multiobj.py:134
↓ 6 callersFunctionget_generator_static
(X1,IX1,batch_size,augment=True)
training_code/FLung_descriptor models/multi_output_v35_branch.py:184
↓ 6 callersFunctionget_generator_static
(X1,IX1,batch_size,augment=True)
training_code/FLung_descriptor models/build_nodule_describer_v34_replicate.py:165
↓ 6 callersFunctionget_generator_static
(X1,X2,IX1,IX2,batch_size,augment=True,current_frac=.75)
training_code/DLung/build_luna_model_v29.py:121
↓ 6 callersFunctionget_generator_static
(X1,IX1,batch_size,augment=True)
training_code/DLung/build_nodule_describer_v34.py:165
↓ 6 callersFunctionget_generator_static
(X1,X2,IX1,IX2,batch_size,augment=True,current_frac=.75)
training_code/FLung_nodule_models/build_luna_model_v29.py:121
↓ 6 callersFunctionworldToVoxelCoord
(worldCoord, origin, spacing)
training_code/FLung_descriptor models/data_generator_fn.py:29
↓ 6 callersFunctionworldToVoxelCoord
(worldCoord, origin, spacing)
training_code/DLung/data_generator_fn.py:29
↓ 6 callersFunctionworldToVoxelCoord
(worldCoord, origin, spacing)
training_code/FLung_nodule_models/data_generator_fn.py:29
↓ 5 callersFunctionconv_block
(x_input, num_filters,pool=True,activation='relu',init='orthogonal')
training_code/FLung_descriptor models/malig_only_v35_relu_newschedule.py:35
↓ 5 callersFunctionconv_block
(x_input, num_filters,pool=True,activation='relu',init='orthogonal')
training_code/FLung_descriptor models/malig_only_v35_relu_b32.py:35
↓ 5 callersFunctionconv_block
(x_input, num_filters,pool=True,activation='relu',init='orthogonal')
training_code/FLung_descriptor models/malig_only_v35_relu_sigmoid.py:35
↓ 5 callersFunctionconv_block
(x_input, num_filters,pool=True,activation='relu',init='orthogonal')
training_code/FLung_descriptor models/malig_only_v35_relu_multiobj.py:35
↓ 5 callersFunctionconv_block
(x_input, num_filters,pool=True,norm=False,drop_rate=0.0)
training_code/DLung/build_luna_model_v29.py:2
↓ 5 callersFunctionconv_block
(x_input, num_filters,pool=True,activation='relu',init='orthogonal')
training_code/FLung_nodule_models/nodule_clf_v1.py:35
↓ 5 callersFunctionconv_block
(x_input, num_filters,pool=True,norm=False,drop_rate=0.0)
training_code/FLung_nodule_models/build_luna_model_v29.py:2
↓ 5 callersFunctionworldToVoxelCoord
(worldCoord, origin, spacing)
training_code/FLung_descriptor models/data_generator_fn2_des.py:29
↓ 5 callersFunctionworldToVoxelCoord
(worldCoord, origin, spacing)
training_code/FLung_nodule_models/data_generator_fn2.py:29
↓ 4 callersFunctiondense_branch
(xstart, name, outsize=1,activation='sigmoid')
training_code/FLung_descriptor models/multi_output_v35_branch.py:60
↓ 4 callersFunctiondense_branch
(xstart, name, outsize=1,activation='sigmoid')
training_code/FLung_descriptor models/build_nodule_describer_v34_replicate.py:60
↓ 4 callersFunctiondense_branch
(xstart, name, outsize=1,activation='sigmoid')
training_code/DLung/build_nodule_describer_v34.py:60
↓ 4 callersFunctionload_itk_image
(filename)
training_code/FLung_descriptor models/data_generator_fn.py:22
↓ 4 callersFunctionload_itk_image
(filename)
training_code/DLung/data_generator_fn.py:22
↓ 4 callersFunctionload_itk_image
(filename)
training_code/FLung_nodule_models/data_generator_fn.py:22
↓ 4 callersFunctionresize_voxel
(x, desired_shape)
training_code/FLung_descriptor models/data_generator_fn.py:34
↓ 4 callersFunctionresize_voxel
(x, desired_shape)
training_code/DLung/data_generator_fn.py:34
↓ 4 callersFunctionresize_voxel
(x, desired_shape)
training_code/FLung_nodule_models/data_generator_fn.py:34
↓ 4 callersFunctionworldToVoxelCoord
(worldCoord, origin, spacing)
training_code/aws/data_generator_fn3.py:29
↓ 3 callersFunctioncrop
(img,thresh=-800)
training_code/FLung_nodule_models/create_nodules_from_modelv29.py:16
↓ 3 callersFunctioncrop
(img,thresh=-800)
scoring_code/create_nodules_from_modelv29.py:16
↓ 3 callersFunctionget_strides
(steps,size,offset,VOXEL_SIZE)
training_code/aws/score_ident_model_v1_stage2.py:125
↓ 3 callersFunctionget_strides
(steps,size,offset,VOXEL_SIZE)
training_code/FLung_nodule_models/create_nodules_from_modelv29.py:36
↓ 3 callersFunctionget_strides
(steps,size,offset,VOXEL_SIZE)
training_code/FLung_nodule_models/score_ident_model_v1.py:125
↓ 3 callersFunctionget_strides
(steps,size,offset,VOXEL_SIZE)
scoring_code/score_ident_model_v1_stage2.py:125
↓ 3 callersFunctionget_strides
(steps,size,offset,VOXEL_SIZE)
scoring_code/create_nodules_from_modelv29.py:36
↓ 3 callersFunctionload_itk_image
(filename)
training_code/FLung_descriptor models/data_generator_fn2_des.py:22
↓ 3 callersFunctionload_itk_image
(filename)
training_code/FLung_nodule_models/data_generator_fn2.py:22
↓ 3 callersFunctionresize_voxel
(x, desired_shape)
training_code/FLung_descriptor models/data_generator_fn2_des.py:34
↓ 3 callersFunctionresize_voxel
(x, desired_shape)
training_code/FLung_nodule_models/data_generator_fn2.py:34
↓ 3 callersFunctionstr_to_arr
(arr_str,length)
training_code/FLung_descriptor models/malig_only_v35_relu_multiobj.py:53
↓ 3 callersFunctionstr_to_arr
(arr_str,length)
training_code/FLung_descriptor models/multi_output_v35_branch.py:53
↓ 3 callersFunctionstr_to_arr
(arr_str,length)
training_code/FLung_descriptor models/build_nodule_describer_v34_replicate.py:53
↓ 3 callersFunctionstr_to_arr
(arr_str,length)
training_code/DLung/build_luna_model_v29.py:18
↓ 3 callersFunctionstr_to_arr
(arr_str,length)
training_code/DLung/build_nodule_describer_v34.py:53
↓ 3 callersFunctionstr_to_arr
(arr_str,length)
training_code/FLung_nodule_models/build_luna_model_v29.py:18
↓ 2 callersFunctionbuild_model
(input_shape)
training_code/FLung_descriptor models/malig_only_v35_relu_newschedule.py:68
↓ 2 callersFunctionbuild_model
(input_shape)
training_code/FLung_descriptor models/nodule_des_v37c.py:37
↓ 2 callersFunctionbuild_model
(input_shape)
training_code/FLung_descriptor models/malig_only_v35_relu_b32.py:68
↓ 2 callersFunctionbuild_model
(input_shape)
training_code/FLung_descriptor models/nodule_des_v36.py:68
↓ 2 callersFunctionbuild_model
(input_shape)
training_code/FLung_descriptor models/malig_only_v35_relu_sigmoid.py:68
↓ 2 callersFunctionbuild_model
(input_shape)
training_code/FLung_descriptor models/nodule_des_v37.py:68
↓ 2 callersFunctionbuild_model
(input_shape)
training_code/FLung_descriptor models/malig_only_v35_relu_multiobj.py:68
↓ 2 callersFunctionbuild_model
(input_shape)
training_code/FLung_descriptor models/multi_output_v35_branch.py:69
↓ 2 callersFunctionbuild_model
(input_shape)
training_code/FLung_descriptor models/build_nodule_describer_v34_replicate.py:68
↓ 2 callersFunctionbuild_model
(input_shape)
training_code/aws/nodule_des_v38.py:32
↓ 2 callersFunctionbuild_model
(input_shape)
training_code/aws/nodule_des_v37d_part2.py:35
↓ 2 callersFunctionbuild_model
(input_shape)
training_code/aws/nodule_des_v37d_part1.py:34
↓ 2 callersFunctionbuild_model
(input_shape)
training_code/aws/nodule_des_v37f.py:35
↓ 2 callersFunctionbuild_model
(input_shape)
training_code/aws/nodule_des_v37b.py:32
↓ 2 callersFunctionbuild_model
(input_shape)
training_code/aws/nodule_des_v37d_part3.py:34
↓ 2 callersFunctionbuild_model
(input_shape)
training_code/aws/nodule_des_v37g.py:35
↓ 2 callersFunctionbuild_model
(input_shape)
training_code/DLung/build_luna_model_v29.py:33
↓ 2 callersFunctionbuild_model
(input_shape)
training_code/DLung/build_nodule_describer_v34.py:68
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