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Types & classes140 in github.com/citiususc/BigSeqKit

⨍ Functions 701◇ Types & classes 140
↓ 20 callersClassSeqKitConfig
bigseqkit-py/bigseqkit/helper.py:50
↓ 2 callersTypeAliasKV
bigseqkit-lib/replace.go:188
↓ 2 callersClassKitConfig
bigseqkit-py/bigseqkit/helper.py:76
↓ 2 callersClassSeqKitRangeOptions
bigseqkit-py/bigseqkit/range.py:6
↓ 1 callersClassCommonOptions
bigseqkit-py/bigseqkit/common.py:52
↓ 1 callersClassConcatOptions
bigseqkit-py/bigseqkit/concat.py:37
↓ 1 callersClassDuplicateOptions
bigseqkit-py/bigseqkit/duplicate.py:22
↓ 1 callersClassFa2FqOptions
bigseqkit-py/bigseqkit/fa2fq.py:27
↓ 1 callersClassFq2FaOptions
bigseqkit-py/bigseqkit/fq2fa.py:20
↓ 1 callersClassGrepOptions
bigseqkit-py/bigseqkit/grep.py:77
↓ 1 callersClassHeadGenomeOptions
bigseqkit-py/bigseqkit/head_genome.py:32
↓ 1 callersClassHeadOptions
bigseqkit-py/bigseqkit/head.py:25
↓ 1 callersClassLocateOptions
bigseqkit-py/bigseqkit/locate.py:65
↓ 1 callersClassRangeOptions
bigseqkit-py/bigseqkit/range.py:55
↓ 1 callersClassRenameOptions
bigseqkit-py/bigseqkit/rename.py:28
↓ 1 callersClassRmDupOptions
bigseqkit-py/bigseqkit/rmdup.py:51
↓ 1 callersClassSampleOptions
bigseqkit-py/bigseqkit/sample.py:42
↓ 1 callersClassSeqKitCommonOptions
bigseqkit-py/bigseqkit/common.py:4
↓ 1 callersClassSeqKitConcatOptions
bigseqkit-py/bigseqkit/concat.py:4
↓ 1 callersClassSeqKitDuplicateOptions
bigseqkit-py/bigseqkit/duplicate.py:4
↓ 1 callersClassSeqKitFa2FqOptions
bigseqkit-py/bigseqkit/fa2fq.py:4
↓ 1 callersClassSeqKitFaidxOptions
bigseqkit-py/bigseqkit/faidx.py:6
↓ 1 callersClassSeqKitFq2FaOptions
bigseqkit-py/bigseqkit/fq2fa.py:4
↓ 1 callersClassSeqKitGrepOptions
bigseqkit-py/bigseqkit/grep.py:6
↓ 1 callersClassSeqKitHeadGenomeOptions
bigseqkit-py/bigseqkit/head_genome.py:4
↓ 1 callersClassSeqKitHeadOptions
bigseqkit-py/bigseqkit/head.py:4
↓ 1 callersClassSeqKitLocateOptions
bigseqkit-py/bigseqkit/locate.py:6
↓ 1 callersClassSeqKitRenameOptions
bigseqkit-py/bigseqkit/rename.py:4
↓ 1 callersClassSeqKitReplaceOptions
bigseqkit-py/bigseqkit/replace.py:4
↓ 1 callersClassSeqKitRmDupOptions
bigseqkit-py/bigseqkit/rmdup.py:4
↓ 1 callersClassSeqKitSampleOptions
bigseqkit-py/bigseqkit/sample.py:4
↓ 1 callersClassSeqKitSeqOptions
bigseqkit-py/bigseqkit/seq.py:4
↓ 1 callersClassSeqKitShuffleOptions
bigseqkit-py/bigseqkit/suffle.py:4
↓ 1 callersClassSeqKitSortOptions
bigseqkit-py/bigseqkit/sort.py:4
↓ 1 callersClassSeqKitSubseqOptions
bigseqkit-py/bigseqkit/subseq.py:6
↓ 1 callersClassSeqKitTranslateOptions
bigseqkit-py/bigseqkit/translate.py:6
↓ 1 callersClassSeqOptions
bigseqkit-py/bigseqkit/seq.py:77
↓ 1 callersClassSeqOptions
bigseqkit-py/bigseqkit/faidx.py:52
↓ 1 callersClassSeqOptions
bigseqkit-py/bigseqkit/replace.py:49
↓ 1 callersClassShuffleOptions
bigseqkit-py/bigseqkit/suffle.py:23
↓ 1 callersClassSortOptions
bigseqkit-py/bigseqkit/sort.py:80
↓ 1 callersClassSubseqOptions
bigseqkit-py/bigseqkit/subseq.py:46
↓ 1 callersClassTranslateOptions
bigseqkit-py/bigseqkit/translate.py:49
StructArrayIterator
bigseqkit-lib/helper.go:142
StructBedFeature
BedFeature is the gff BedFeature struct
bigseqkit-lib/subseq.go:228
StructCommonJoin
bigseqkit-lib/common.go:116
StructCommonOptions
bigseqkit/common.go:13
StructConcatJoin
bigseqkit-lib/concat.go:75
StructConcatOptions
bigseqkit/concat.go:12
StructConcatPrepare
bigseqkit-lib/concat.go:21
StructDuplicate
bigseqkit-lib/duplicate.go:13
StructDuplicateOptions
bigseqkit/duplicate.go:9
StructFa2Fq
bigseqkit-lib/fa2fq.go:21
StructFa2FqOptions
bigseqkit/fa2fq.go:11
StructFaidx
bigseqkit-lib/faidx.go:54
StructFaidxOffset
bigseqkit-lib/faidx.go:33
StructFaidxOptions
bigseqkit/faidx.go:11
StructFaidxQuery
bigseqkit-lib/faidx.go:235
StructFileStore
bigseqkit-lib/helper.go:382
StructFq2Fa
bigseqkit-lib/fq2fa.go:19
StructFq2FaOptions
bigseqkit/fq2fa.go:11
StructGrep
bigseqkit-lib/grep.go:28
StructGrepOptions
bigseqkit/grep.go:13
StructGrepPairMatched
bigseqkit-lib/grep.go:555
StructGrepReduceCount
bigseqkit-lib/grep.go:602
StructGrepReducePairMatched
bigseqkit-lib/grep.go:569
StructGrepValueMatched
bigseqkit-lib/grep.go:589
StructHeadGenome
bigseqkit-lib/head_genome.go:21
StructHeadGenomeOptions
bigseqkit/head_genome.go:14
StructHeadOptions
bigseqkit/head.go:12
TypeAliasIndex
bigseqkit-lib/faidx.go:22
StructKitConfig
bigseqkit/helper.go:29
StructLocate
bigseqkit-lib/locate.go:23
StructLocateOptions
bigseqkit/locate.go:9
StructPair
bigseqkit-lib/pair.go:71
StructPairF
bigseqkit-lib/pair.go:149
StructPairI
bigseqkit-lib/pair.go:127
StructPairOptions
bigseqkit/pair.go:12
StructPairPrepare
bigseqkit-lib/pair.go:19
StructRangeFilter
bigseqkit-lib/range.go:36
StructRangeOptions
bigseqkit/range.go:14
StructRangePrepare
bigseqkit-lib/range.go:13
StructReadFixer
bigseqkit-lib/helper.go:30
StructRename
bigseqkit-lib/rename.go:75
StructRenameOptions
bigseqkit/rename.go:12
StructRenamePrepare
bigseqkit-lib/rename.go:21
StructReplace
bigseqkit-lib/replace.go:24
StructReplaceOptions
bigseqkit/replace.go:9
StructRmDupCheck
bigseqkit-lib/rmdup.go:96
StructRmDupOptions
bigseqkit/rmdup.go:13
StructRmDupPrepare
bigseqkit-lib/rmdup.go:27
StructSampleOptions
bigseqkit/sample.go:12
StructSeqKitCommonOptions
bigseqkit/common.go:9
StructSeqKitConcatOptions
bigseqkit/concat.go:8
StructSeqKitConfig
bigseqkit/helper.go:25
StructSeqKitDuplicateOptions
bigseqkit/duplicate.go:5
StructSeqKitFa2FqOptions
bigseqkit/fa2fq.go:7
StructSeqKitFaidxOptions
bigseqkit/faidx.go:7
StructSeqKitFq2FaOptions
bigseqkit/fq2fa.go:7
StructSeqKitGrepOptions
bigseqkit/grep.go:9
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