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Functions3,192 in github.com/chhylp123/hifiasm

⨍ Functions 3,192◇ Types & classes 18
↓ 4 callersFunctionget_unique_rctg_aln
inter.cpp:16269
↓ 4 callersFunctionget_unitig_trio_flag
Overlaps.cpp:20430
↓ 4 callersFunctionget_utg_path
hic.cpp:3605
↓ 4 callersFunctionget_win_aln
[ys, ye)
Correct.cpp:14917
↓ 4 callersFunctionha_ct_destroy_bf
htab.cpp:161
↓ 4 callersFunctionha_ft_cnt
htab.cpp:1064
↓ 4 callersFunctionha_get_candidates_interface
anchor.cpp:685
↓ 4 callersFunctionha_opt_hic
CommandLines.h:190
↓ 4 callersFunctionha_triobin
Trio.cpp:450
↓ 4 callersFunctionhc_phase_robust_rr
Correct.cpp:19065
↓ 4 callersFunctionhit_long_gap
Hash_Table.cpp:2607
↓ 4 callersFunctionhorder_clean_sg_by_utg
horder.cpp:803
↓ 4 callersFunctionhpc_mask_ff_region
Correct.cpp:10454
↓ 4 callersFunctionidentify_best_interval
hic.cpp:11671
↓ 4 callersFunctionidx_hits
horder.cpp:458
↓ 4 callersFunctionif_is_homopolymer_strict
Correct.h:472
↓ 4 callersFunctionif_qchain_cnn
li is the suffix
inter.cpp:8476
↓ 4 callersFunctioninfer_se
inter.cpp:11181
↓ 4 callersFunctioninit_Candidates_list
Hash_Table.cpp:1243
↓ 4 callersFunctioninit_Cigar_record
Correct.cpp:11179
↓ 4 callersFunctioninit_G_partition
hic.cpp:6269
↓ 4 callersFunctioninit_bit_extz_t
Levenshtein_distance.h:891
↓ 4 callersFunctioninit_fake_cigar
Hash_Table.cpp:1275
↓ 4 callersFunctioninit_ps_t
hic.cpp:16057
↓ 4 callersFunctioninsert_poa_nodes_0
gfa_ut.cpp:5468
↓ 4 callersFunctioninteger_hit2arc
gfa_ut.cpp:6810
↓ 4 callersFunctionis_connect_arc
li is the suffix of lj
Overlaps.cpp:15083
↓ 4 callersFunctionis_hap_ovlp
tovlp.cpp:872
↓ 4 callersFunctionis_het_bridge
gfa_ut.cpp:9554
↓ 4 callersFunctionis_het_ulg_edge
gfa_ut.cpp:8750
↓ 4 callersFunctionis_rg_connect
inter.cpp:17630
↓ 4 callersFunctionis_unreliable_hits
hic.cpp:1635
↓ 4 callersFunctionkhit_long_gap
Correct.cpp:14966
↓ 4 callersFunctionkt_u_trans_t_simple_symm
Overlaps.cpp:17260
↓ 4 callersFunctionlchain_qdp_mcopy
Hash_Table.cpp:1841
↓ 4 callersFunctionlchain_refine
Hash_Table.cpp:2457
↓ 4 callersFunctionload_hc_trans
Overlaps.cpp:14262
↓ 4 callersFunctionmc_edges_idx
rcut.cpp:201
↓ 4 callersFunctionmc_g_cc
rcut.cpp:1255
↓ 4 callersFunctionmc_optimize_local
rcut.cpp:1702
↓ 4 callersFunctionmc_reset_z
rcut.cpp:1498
↓ 4 callersFunctionmc_score_all
rcut.cpp:1487
↓ 4 callersFunctionmeasure_distance
hic.cpp:4952
↓ 4 callersFunctionmg_log2
inter.cpp:654
↓ 4 callersFunctionminor_transitive_reduction_r_g
Overlaps.cpp:35509
↓ 4 callersFunctionmodify_target_interval
Purge_Dups.cpp:1253
↓ 4 callersFunctionold_path_ext
gfa_ut.cpp:13262
↓ 4 callersFunctionosg_cleanup
horder.cpp:2480
↓ 4 callersFunctionoutput_trio_graph_joint
Overlaps.cpp:23244
↓ 4 callersFunctionoverlap_region2ul_ov_t
inter.cpp:11694
↓ 4 callersFunctionovlp_win_check
Correct.cpp:22190
↓ 4 callersFunctionpanic
kalloc.cpp:32
↓ 4 callersFunctionpartition_ul_overlaps_advance
Correct.cpp:10696
↓ 4 callersFunctionpop_trace_back
Levenshtein_distance.h:542
↓ 4 callersFunctionpop_trace_bp
Levenshtein_distance.h:584
↓ 4 callersFunctionprt_dbg_rs
Assembly.cpp:983
↓ 4 callersFunctionpush_cigar
Assembly.cpp:239
↓ 4 callersFunctionpush_consist_ul_ovlps
Correct.cpp:20555
↓ 4 callersFunctionpush_ff_ovlp
ecovlp.cpp:2641
↓ 4 callersFunctionpush_ne_ovlp
ecovlp.cpp:2585
↓ 4 callersFunctionpush_ovlp_chain_qgen
Hash_Table.cpp:1752
↓ 4 callersFunctionpush_ul_ov_t
inter.cpp:10144
↓ 4 callersFunctionpush_unmap_alnw
[qs, qe] && [ts, te]
Correct.cpp:16021
↓ 4 callersFunctionpushp_usg_arc_mm
gfa_ut.cpp:10562
↓ 4 callersFunctionquick_LIS
Purge_Dups.cpp:1633
↓ 4 callersFunctionrd_hm_drop0
Overlaps.cpp:25241
↓ 4 callersFunctionrecover_UC_sub_Read
Process_Read.cpp:618
↓ 4 callersFunctionreduce_hamming_error_adv
Overlaps.cpp:25473
↓ 4 callersFunctionrenew_kv_u_trans
hic.cpp:16003
↓ 4 callersFunctionrescue_trans_ul_chains
inter.cpp:2936
↓ 4 callersFunctionreset_bub
Overlaps.cpp:36534
↓ 4 callersFunctionreset_bub_label_t
Overlaps.cpp:369
↓ 4 callersFunctionresolve_hit
horder.cpp:435
↓ 4 callersFunctionretrive_str_piece_exz
Correct.cpp:14929
↓ 4 callersFunctionreturn_t_chain
Correct.cpp:22997
↓ 4 callersFunctionreverse_string
Levenshtein_distance.h:361
↓ 4 callersFunctionshrink_1b
gfa_ut.cpp:7671
↓ 4 callersFunctionsingle_edge_length
Overlaps.cpp:3401
↓ 4 callersFunctionsort_kvec_t_u64_warp
Overlaps.cpp:414
↓ 4 callersFunctionsplit_ug_lalign
inter.cpp:9967
↓ 4 callersFunctiontrio_check
Overlaps.cpp:18433
↓ 4 callersFunctionul_occ_check
gfa_ut.cpp:10201
↓ 4 callersFunctionulg_bub_pop1
gfa_ut.cpp:9941
↓ 4 callersFunctionunitig_arc_del_short_diploid_by_length_topo
Overlaps.cpp:6717
↓ 4 callersFunctionupdate_overlaps
Assembly.cpp:1184
↓ 4 callersFunctionupdate_partition_flag
hic.cpp:10961
↓ 4 callersFunctionupdate_poa_nid_occ
gfa_ut.cpp:5455
↓ 4 callersFunctionusg_arc_cut_srt_length
gfa_ut.cpp:11104
↓ 4 callersFunctionusg_bub_clean
gfa_ut.cpp:15917
↓ 4 callersFunctionusg_naive_topocut_aux_sec
gfa_ut.cpp:10902
↓ 4 callersFunctionusg_topocut_aux_del
gfa_ut.cpp:17843
↓ 4 callersFunctionusg_unique_arcs_cluster_adv
gfa_ut.cpp:12201
↓ 4 callersFunctionverify_sub_window
Correct.cpp:947
↓ 4 callersFunctionverify_ul_sub_window
Correct.cpp:992
↓ 3 callersFunctionInitHaplotypeEvdience
Correct.h:952
↓ 3 callersFunctionKRADIX_SORT_INIT
anchor.cpp:30
↓ 3 callersFunction__kh_h2b
khashl.h:98
↓ 3 callersFunction_refine_select
sketch.cpp:331
↓ 3 callersFunctionaddSNPtohaplotype_details
mark SNPs at [xBeg, xEnd], note we need to deal with flag_offset carefully
Correct.cpp:6657
↓ 3 callersFunctionadd_Node_DAGCon
POA.h:448
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