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Functions3,192 in github.com/chhylp123/hifiasm

⨍ Functions 3,192◇ Types & classes 18
↓ 3 callersFunctionadd_existing_cell_to_cigar_record_with_different_base
Correct.cpp:11397
↓ 3 callersFunctionadd_new_cell_to_cigar_record_with_different_base
Correct.cpp:11364
↓ 3 callersFunctionadjust_utg_advance
Overlaps.cpp:31460
↓ 3 callersFunctionadjust_utg_by_trio
Overlaps.cpp:20995
↓ 3 callersFunctionalign_ul_ed_post_extz
Correct.cpp:12900
↓ 3 callersFunctionappend_cov_line
Overlaps.cpp:15908
↓ 3 callersFunctionappend_ul_t
Process_Read.cpp:1471
↓ 3 callersFunctionasg_arc_cut_contain
gfa_ut.cpp:2212
↓ 3 callersFunctionasg_arc_cut_trio_long_equal_tips_assembly
Overlaps.cpp:18770
↓ 3 callersFunctionasg_arc_cut_trio_long_equal_tips_assembly_complex
Overlaps.cpp:19086
↓ 3 callersFunctionasg_arc_cut_trio_long_tip_primary
Overlaps.cpp:18462
↓ 3 callersFunctionasg_arc_cut_trio_long_tip_primary_complex
Overlaps.cpp:18584
↓ 3 callersFunctionasg_arc_cut_weak
gfa_ut.cpp:1427
↓ 3 callersFunctionasg_bub_backtrack_primary
in a resolved bubble, mark unused vertices and arcs as "reduced"
Overlaps.cpp:24078
↓ 3 callersFunctionasg_is_utg_end
Overlaps.cpp:2647
↓ 3 callersFunctioncal_exz_extension_0
Correct.cpp:15509
↓ 3 callersFunctioncal_exz_extension_1
Correct.cpp:15537
↓ 3 callersFunctioncal_exz_semi
Correct.cpp:15565
↓ 3 callersFunctioncal_lindel_dd
Correct.cpp:19740
↓ 3 callersFunctioncalculate_boundary_cigars
Correct.cpp:2607
↓ 3 callersFunctioncalculate_overlap_region_by_chaining
Hash_Table.cpp:1090
↓ 3 callersFunctionchain_trans_d
tovlp.cpp:340
↓ 3 callersFunctioncheck_nc_status
Overlaps.cpp:15624
↓ 3 callersFunctioncheck_trans_relation_by_path
hic.cpp:3624
↓ 3 callersFunctionck_ul_alignment
inter.cpp:9469
↓ 3 callersFunctionclean_contain_g
inter.cpp:21857
↓ 3 callersFunctionclear_Queue
POA.h:28
↓ 3 callersFunctionclear_all_ul_t
inter.cpp:22004
↓ 3 callersFunctionconnect_bub_occ
return how many bubbles linked by this node
hic.cpp:6962
↓ 3 callersFunctioncopy_lchain
inter.cpp:1841
↓ 3 callersFunctioncorrect_overlap
Correct.cpp:10935
↓ 3 callersFunctiondebug_add_to_result_snp_vector
Correct.cpp:7553
↓ 3 callersFunctiondelete_ug_node
Overlaps.cpp:21467
↓ 3 callersFunctiondelete_useless_trio_nodes
Overlaps.cpp:20730
↓ 3 callersFunctiondestoryHaplotypeEvdience
Correct.h:1011
↓ 3 callersFunctiondestory_Correct_dumy
Correct.cpp:11251
↓ 3 callersFunctiondestory_Edge_alloc
POA.cpp:33
↓ 3 callersFunctiondestory_R_to_U
Overlaps.cpp:33045
↓ 3 callersFunctiondestory_fake_cigar
Hash_Table.cpp:1282
↓ 3 callersFunctiondestory_sc_lay_t
horder.cpp:3731
↓ 3 callersFunctiondestory_ucr_file_t
inter.cpp:13200
↓ 3 callersFunctiondetect_chimeric_by_topo
Overlaps.cpp:19210
↓ 3 callersFunctiondetect_single_path_with_dels_n_stops
Overlaps.cpp:5855
↓ 3 callersFunctiondouble_check_broken_bubble
hic.cpp:7525
↓ 3 callersFunctiondouble_check_bub_branch
hic.cpp:9270
↓ 3 callersFunctiondouble_check_gconnect
gfa_ut.cpp:7354
↓ 3 callersFunctiondump_asg_t
rcut.cpp:4612
↓ 3 callersFunctiondump_ma_ug_t
rcut.cpp:4640
↓ 3 callersFunctionfilter_adp_k_hits
Correct.cpp:15017
↓ 3 callersFunctionfilter_ul_ug
inter.cpp:19764
↓ 3 callersFunctionflat_rovlp_chain_sc
inter.cpp:15575
↓ 3 callersFunctiongen_cc_fly
ecovlp.cpp:5388
↓ 3 callersFunctiongen_end_coord
inter.cpp:13618
↓ 3 callersFunctiongen_extend_err
Correct.cpp:13356
↓ 3 callersFunctiongen_hc_r_alin
Correct.cpp:25617
↓ 3 callersFunctiongen_hh
htab.cpp:1038
↓ 3 callersFunctiongen_region_phase_robust
[s, e)
Correct.cpp:18348
↓ 3 callersFunctiongetEdge
POA.h:570
↓ 3 callersFunctionget_add_cov_score
inter.cpp:13357
↓ 3 callersFunctionget_best_no_coverage_read
find contained read with longest overlap
Overlaps.cpp:37564
↓ 3 callersFunctionget_bg_flag
gfa_ut.cpp:8621
↓ 3 callersFunctionget_break_point_idx
[beg, end)
Overlaps.cpp:11659
↓ 3 callersFunctionget_co_weight
hic.cpp:6512
↓ 3 callersFunctionget_consensus_break
horder.cpp:972
↓ 3 callersFunctionget_corrected_read_from_cigar
Assembly.cpp:29
↓ 3 callersFunctionget_ext_tip
gfa_ut.cpp:12842
↓ 3 callersFunctionget_hic_breakpoint
horder.cpp:932
↓ 3 callersFunctionget_interval
Correct.cpp:107
↓ 3 callersFunctionget_max_unitig
hic.cpp:14556
↓ 3 callersFunctionget_outfile_name
Overlaps.cpp:39140
↓ 3 callersFunctionget_phase_group
hic.cpp:5443
↓ 3 callersFunctionget_r_hits
horder.cpp:591
↓ 3 callersFunctionget_related_phasing_weight
hic.cpp:12903
↓ 3 callersFunctionget_scp_len
Overlaps.cpp:23019
↓ 3 callersFunctionget_shortest_path
hic.cpp:3495
↓ 3 callersFunctionget_specific_shortest_path
hic.cpp:3562
↓ 3 callersFunctionget_trans
hic.cpp:6769
↓ 3 callersFunctionget_trio_unitig_graph
horder.cpp:773
↓ 3 callersFunctionget_u_trans_hit
Overlaps.cpp:13240
↓ 3 callersFunctionget_ug_coverage
Overlaps.cpp:10753
↓ 3 callersFunctionget_unitig_het_fly
hic.cpp:2523
↓ 3 callersFunctionget_usg_arc_mm
gfa_ut.cpp:11467
↓ 3 callersFunctionget_weightest_hap_label_from_bubble
hic.cpp:10601
↓ 3 callersFunctionh_ec_lchain
anchor.cpp:2302
↓ 3 callersFunctionha_ct_destroy
htab.cpp:171
↓ 3 callersFunctionha_hist_line
hist.cpp:5
↓ 3 callersFunctionha_ovec_mem
Assembly.cpp:527
↓ 3 callersFunctionhc_target_len
inter.cpp:5591
↓ 3 callersFunctionhic_analysis
hic.cpp:17706
↓ 3 callersFunctionhpc_mask_ff
Correct.cpp:10399
↓ 3 callersFunctionif_sup_chimeric
gfa_ut.cpp:845
↓ 3 callersFunctioninit_Cigar_record_buf
Correct.cpp:11196
↓ 3 callersFunctioninit_Correct_dumy
Correct.cpp:11230
↓ 3 callersFunctioninit_Edge_alloc
POA.cpp:14
↓ 3 callersFunctioninit_hap_cov_t
Overlaps.cpp:32043
↓ 3 callersFunctioninit_ma_hit_t_alloc
Overlaps.cpp:1036
↓ 3 callersFunctioninit_ucr_file_t
inter.cpp:13181
↓ 3 callersFunctioninteger_chain
gfa_ut.cpp:4506
↓ 3 callersFunctionis_mmhom_node
inter.cpp:10100
↓ 3 callersFunctionis_useful_node
Overlaps.cpp:20642
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