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Functions3,192 in github.com/chhylp123/hifiasm

⨍ Functions 3,192◇ Types & classes 18
↓ 5 callersFunctiontrans_ovlp_connect
inter.cpp:9537
↓ 5 callersFunctionugl_cover_check
inter.cpp:19600
↓ 5 callersFunctionulg_len_check
gfa_ut.cpp:3388
↓ 5 callersFunctionulg_seq_del
gfa_ut.cpp:8656
↓ 5 callersFunctionupdate_ava_het_site
inter.cpp:2412
↓ 5 callersFunctionupdate_bsg
hic.cpp:8513
↓ 5 callersFunctionupdate_scg
horder.cpp:2763
↓ 5 callersFunctionupdate_sg_uo
gfa_ut.cpp:802
↓ 5 callersFunctionupdate_unitig
Overlaps.cpp:36891
↓ 5 callersFunctionwrite_hc_hits
hic.cpp:5236
↓ 4 callersFunctionOutput_corrected_reads
Assembly.cpp:884
↓ 4 callersFunctionReserve_Banded_BPM_Extension
Levenshtein_distance.h:71
↓ 4 callersFunctionadd_bi_direction_edge
POA.cpp:83
↓ 4 callersFunctionadjust_ext_offset_fixed_t
[qmin, qmax) && [tmin, tmax)
Correct.cpp:15811
↓ 4 callersFunctionalign_ul_ed_post
Correct.cpp:12505
↓ 4 callersFunctionaln_wlst_adv_exz
Correct.cpp:4057
↓ 4 callersFunctionappend_node_arcs
Overlaps.cpp:26464
↓ 4 callersFunctionappend_sub_utg
horder.cpp:1218
↓ 4 callersFunctionasg_arc_cut_length
gfa_ut.cpp:1278
↓ 4 callersFunctionasg_check_unambi1
check if v has only one branch
Overlaps.cpp:6546
↓ 4 callersFunctionasg_get_arc
Overlaps.h:450
↓ 4 callersFunctionbuild_unitig_index
hic.cpp:815
↓ 4 callersFunctioncal_bw
Hash_Table.cpp:1475
↓ 4 callersFunctioncal_exact_batch
inter.cpp:11871
↓ 4 callersFunctioncal_exz_infi
Correct.cpp:14508
↓ 4 callersFunctioncal_offset_len
Overlaps.cpp:23139
↓ 4 callersFunctioncal_utg_occ
gfa_ut.cpp:17874
↓ 4 callersFunctionchain_origin_trans_uid_by_distance
Overlaps.cpp:13504
↓ 4 callersFunctioncheck_coverage_gap
Correct.cpp:1068
↓ 4 callersFunctioncheck_exact_match
hic.cpp:891
↓ 4 callersFunctioncheck_hap_match
Purge_Dups.cpp:1089
↓ 4 callersFunctioncollect_trans_cov
Overlaps.cpp:13664
↓ 4 callersFunctionconnect_detect
inter.cpp:7766
↓ 4 callersFunctiondebug_aln_err
Correct.cpp:23700
↓ 4 callersFunctiondelete_all_edges
Overlaps.cpp:1657
↓ 4 callersFunctiondelete_useless_nodes
Overlaps.cpp:20600
↓ 4 callersFunctiondestory_All_reads
Process_Read.cpp:46
↓ 4 callersFunctiondestory_Candidates_list
Hash_Table.cpp:1257
↓ 4 callersFunctiondestory_Cigar_record
Correct.cpp:11203
↓ 4 callersFunctiondestory_enzyme
CommandLines.cpp:378
↓ 4 callersFunctiondestory_hc_pt_index
hic.cpp:853
↓ 4 callersFunctiondestory_ma_hit_t_alloc
Overlaps.cpp:1059
↓ 4 callersFunctiondestory_ps_t
hic.cpp:16066
↓ 4 callersFunctiondestory_ug_rid_cov_t
Overlaps.cpp:15754
↓ 4 callersFunctiondestroy_bit_extz_t
Levenshtein_distance.h:898
↓ 4 callersFunctiondetect_single_path
Overlaps.cpp:3431
↓ 4 callersFunctiondetermine_hap_overlap_type_advance
Purge_Dups.cpp:2384
↓ 4 callersFunctiondfs_bubble
hic.cpp:2286
↓ 4 callersFunctiondfs_reach
tovlp.cpp:826
↓ 4 callersFunctioned_cut
Correct.cpp:13063
↓ 4 callersFunctionestimate_ul_len
gfa_ut.cpp:4905
↓ 4 callersFunctionexact_ec_check
ecovlp.cpp:2803
↓ 4 callersFunctionextracr_clean_arc
gfa_ut.cpp:15757
↓ 4 callersFunctionextract_mm_hpc
[off_s, off_e)
Correct.cpp:13513
↓ 4 callersFunctionextract_sub_cigar_err
[s, e)
Correct.cpp:18093
↓ 4 callersFunctionfill_unitig
Purge_Dups.cpp:4052
↓ 4 callersFunctionfilter_u_trans
Overlaps.cpp:14754
↓ 4 callersFunctionfollow_limit_path
gfa_ut.cpp:493
↓ 4 callersFunctiongconnect_test
inter.cpp:18042
↓ 4 callersFunctiongen_backtrace_non_retrieve_adv_exz
Correct.cpp:12641
↓ 4 callersFunctiongen_clip_win_err
Correct.cpp:23808
↓ 4 callersFunctiongen_extend_err_exz
Correct.cpp:13400
↓ 4 callersFunctiongen_gchain_track
inter.cpp:14670
↓ 4 callersFunctiongen_sp_node
inter.cpp:1029
↓ 4 callersFunctiongen_spec_rc_edge
gfa_ut.cpp:15004
↓ 4 callersFunctiongen_trans_adaptive_mmhap_aln
inter.cpp:10549
↓ 4 callersFunctiongen_ug_rid_cov_t
Overlaps.cpp:15724
↓ 4 callersFunctiongenerate_edge
Overlaps.cpp:38179
↓ 4 callersFunctiongenerate_haplotypes_naive_HiFi
Correct.cpp:8845
↓ 4 callersFunctiongetInputNodes
POA.h:232
↓ 4 callersFunctionget_5_3_list
hic.cpp:1664
↓ 4 callersFunctionget_Edge_Weight
POA.h:413
↓ 4 callersFunctionget_arc_support_chain
gfa_ut.cpp:13122
↓ 4 callersFunctionget_available_interval
Correct.cpp:180
↓ 4 callersFunctionget_best_het_node
gfa_ut.cpp:17767
↓ 4 callersFunctionget_break_point_cov_advance
Overlaps.cpp:11537
↓ 4 callersFunctionget_btg_occ
hic.cpp:8074
↓ 4 callersFunctionget_chain_weight
hic.cpp:9105
↓ 4 callersFunctionget_chain_x_by_y
Correct.cpp:22520
↓ 4 callersFunctionget_cigar_errors
Assembly.cpp:123
↓ 4 callersFunctionget_cluster_inner_weight
hic.cpp:10938
↓ 4 callersFunctionget_consensus_rate
Overlaps.cpp:10200
↓ 4 callersFunctionget_dir_v
tovlp.cpp:931
↓ 4 callersFunctionget_edge2existing_node_advance_by_broken_bub
Overlaps.cpp:33409
↓ 4 callersFunctionget_end_hifi
gfa_ut.cpp:14556
↓ 4 callersFunctionget_end_match_length
Overlaps.cpp:1268
↓ 4 callersFunctionget_error
Levenshtein_distance.h:20
↓ 4 callersFunctionget_flex_arcs
gfa_ut.cpp:476
↓ 4 callersFunctionget_hap_similarity
Overlaps.cpp:28959
↓ 4 callersFunctionget_het_occ
inter.cpp:2812
↓ 4 callersFunctionget_hic_cov_interval
horder.cpp:893
↓ 4 callersFunctionget_hits_weight
hic.cpp:15602
↓ 4 callersFunctionget_mask_interval
inter.cpp:11766
↓ 4 callersFunctionget_max_hap_g
hic.cpp:12611
↓ 4 callersFunctionget_overlap_region_sub_err
inter.cpp:5295
↓ 4 callersFunctionget_phase_path
hic.cpp:10380
↓ 4 callersFunctionget_r_edge
horder.cpp:1513
↓ 4 callersFunctionget_related_bub_nodes
hic.cpp:7807
↓ 4 callersFunctionget_trans_ug_arch
hic.cpp:4007
↓ 4 callersFunctionget_ul_occ
gfa_ut.cpp:8036
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