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Functions3,192 in github.com/chhylp123/hifiasm

⨍ Functions 3,192◇ Types & classes 18
↓ 6 callersFunctiongovlp_check
Correct.cpp:19216
↓ 6 callersFunctionhc_aln_exz_adv
Correct.cpp:16082
↓ 6 callersFunctionhc_hash_long
hic.cpp:365
↓ 6 callersFunctionhc_shortest_k
max_dist is like the overlap length in string graph first_src_ban do not allow co-linear chain at the same node
inter.cpp:14036
↓ 6 callersFunctionhic_clean
Overlaps.cpp:14304
↓ 6 callersFunctionidx_hc_links
hic.cpp:15321
↓ 6 callersFunctionif_conflict_utg
hic.cpp:9060
↓ 6 callersFunctionif_node_exist
Overlaps.cpp:3384
↓ 6 callersFunctionif_primary_unitig
Overlaps.cpp:18895
↓ 6 callersFunctionis_mask_err_full
inter.cpp:11812
↓ 6 callersFunctionkm_destroy
kalloc.cpp:49
↓ 6 callersFunctionks_getuntil
kseq.h:153
↓ 6 callersFunctionksw_push_cigar
ksw2.h:104
↓ 6 callersFunctionma_hit_sort_tn
Overlaps.cpp:404
↓ 6 callersFunctionma_ug_hybrid_gen
gfa_ut.cpp:12524
↓ 6 callersFunctionminor_transitive_reduction
Overlaps.cpp:33874
↓ 6 callersFunctionnormlize_gdis
gfa_ut.cpp:4368
↓ 6 callersFunctionosg_arc_pushp
horder.cpp:2436
↓ 6 callersFunctionphase_bubble_chain_dir
hic.cpp:11326
↓ 6 callersFunctionprint_N50
horder.cpp:354
↓ 6 callersFunctionpush_final_overlaps
Assembly.cpp:311
↓ 6 callersFunctionpush_khit
Correct.cpp:16779
↓ 6 callersFunctionpush_pdq
hic.cpp:3436
↓ 6 callersFunctionpush_trace_bp
Levenshtein_distance.h:558
↓ 6 callersFunctionretrieve_str_seq_exz
[s, e); [ps, pe)
Correct.cpp:15459
↓ 6 callersFunctionreturn_str_seq_exz
Correct.cpp:2365
↓ 6 callersFunctionset_herror_win
Correct.cpp:3099
↓ 6 callersFunctionset_rset
Overlaps.cpp:15592
↓ 6 callersFunctiontest_dbug
Overlaps.cpp:14700
↓ 6 callersFunctiontq_push
htab.h:44
↓ 6 callersFunctiontq_shift
htab.h:49
↓ 6 callersFunctionug_lalign
Correct.cpp:25850
↓ 6 callersFunctionupdate_overlap_region
Correct.cpp:17249
↓ 6 callersFunctionusg_arc_cut_tips
gfa_ut.cpp:10717
↓ 6 callersFunctionusg_naive_topocut_aux
gfa_ut.cpp:10871
↓ 6 callersFunctionwrite_all_ul_t
inter.cpp:21599
↓ 6 callersFunctionwrite_dbug
Overlaps.cpp:14735
↓ 6 callersFunctionyak_peakrss_in_gb
sys.cpp:51
↓ 5 callersFunctionOutput_PAF
Assembly.cpp:1673
↓ 5 callersFunctionResizeInitHaplotypeEvdience
Correct.h:1030
↓ 5 callersFunctionSetSnpMatrix
Correct.h:804
↓ 5 callersFunctionalignment_worker_pipeline
hic.cpp:15265
↓ 5 callersFunctionaln_wlst_adv
Correct.cpp:3976
↓ 5 callersFunctionasg_end
gfa_ut.cpp:527
↓ 5 callersFunctioncal_exz_infi_non_retrieve_adv
Correct.cpp:15675
↓ 5 callersFunctioncal_exz_infi_simi_adv
Correct.cpp:15838
↓ 5 callersFunctioncalculate_ul_boundary_cigars
Correct.cpp:2787
↓ 5 callersFunctioncheck_bubble_tangle
hic.cpp:8092
↓ 5 callersFunctioncheck_contain_pair
inter.cpp:3048
↓ 5 callersFunctioncheck_trans_rate
inter.cpp:3981
↓ 5 callersFunctionclean_u_trans_t_idx_filter_adv
Overlaps.cpp:15503
↓ 5 callersFunctionclear_Graph
POA.cpp:254
↓ 5 callersFunctiondebug_sysm_usg_t
gfa_ut.cpp:12353
↓ 5 callersFunctiondecode_score
Purge_Dups.cpp:3608
↓ 5 callersFunctiondestory_hc_links
Overlaps.cpp:14173
↓ 5 callersFunctiondestory_overlap_region_alloc
Hash_Table.cpp:53
↓ 5 callersFunctiondestroy_scaf_res_t
Process_Read.cpp:2223
↓ 5 callersFunctionfind_mg_lchain_max
inter.cpp:5575
↓ 5 callersFunctionfix_boundary
Correct.cpp:2226
↓ 5 callersFunctionfix_ul_boundary
Correct.cpp:2106
↓ 5 callersFunctionflip_unitig
hic.cpp:14614
↓ 5 callersFunctiong_adjacent_dis
inter.cpp:4490
↓ 5 callersFunctiongen_backtrace_adv_exz
Correct.cpp:12563
↓ 5 callersFunctiongetOutputNodes
POA.h:303
↓ 5 callersFunctionget_bi_direction_edges
POA.h:366
↓ 5 callersFunctionget_hap_overlapLen
Purge_Dups.cpp:791
↓ 5 callersFunctionget_hic_enzymes
CommandLines.cpp:792
↓ 5 callersFunctionget_remove_hifi_occ
gfa_ut.cpp:8499
↓ 5 callersFunctionget_trans_weight_advance
hic.cpp:6774
↓ 5 callersFunctionget_ug_tip_trio_infor
gfa_ut.cpp:1799
↓ 5 callersFunctionget_weightest_hap_label_from_uid
hic.cpp:10547
↓ 5 callersFunctionha_compress_base
Process_Read.cpp:792
↓ 5 callersFunctionha_ft_gen
htab.cpp:1136
↓ 5 callersFunctionha_opt_reset_to_round
CommandLines.cpp:402
↓ 5 callersFunctionha_ptl_get
htab.cpp:529
↓ 5 callersFunctionhc_aln_exz_simi_adv
Correct.cpp:23110
↓ 5 callersFunctionhic_clean_adv
Overlaps.cpp:14403
↓ 5 callersFunctionidentify_bubbles
hic.cpp:2354
↓ 5 callersFunctionif_exact_match
Correct.h:1279
↓ 5 callersFunctioninit_hc_links
Overlaps.cpp:14149
↓ 5 callersFunctioninit_overlap_region_alloc
Hash_Table.cpp:27
↓ 5 callersFunctioninter_interval
Overlaps.h:1081
↓ 5 callersFunctionkv_push
horder.cpp:693
↓ 5 callersFunctionlayout_scg
horder.cpp:3738
↓ 5 callersFunctionlchain_qdp_mcopy_fast
Hash_Table.cpp:2097
↓ 5 callersFunctionload_all_ul_t
inter.cpp:21644
↓ 5 callersFunctionload_hc_hits
hic.cpp:5399
↓ 5 callersFunctionmcgg_score
rcut.cpp:4061
↓ 5 callersFunctionprint_debug_gfa
Overlaps.cpp:16625
↓ 5 callersFunctionprint_hap_paf
Purge_Dups.cpp:2613
↓ 5 callersFunctionprint_utg
Overlaps.cpp:14185
↓ 5 callersFunctionpush_cns_anchor
ecovlp.cpp:2109
↓ 5 callersFunctionpush_cov_interval_direct
Overlaps.cpp:11489
↓ 5 callersFunctionpush_poa_arch_0
gfa_ut.cpp:5513
↓ 5 callersFunctionpush_rphase
Correct.cpp:21593
↓ 5 callersFunctionpush_sec_aln_robust
Correct.cpp:18201
↓ 5 callersFunctionpush_to_Queue
POA.h:66
↓ 5 callersFunctionresize_fake_cigar
Hash_Table.cpp:1331
↓ 5 callersFunctionretrieve_ul_t
Process_Read.cpp:1593
↓ 5 callersFunctionreverse_complement
Process_Read.cpp:977
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