MCPcopy Create free account

hub / github.com/chhylp123/hifiasm / functions

Functions3,192 in github.com/chhylp123/hifiasm

⨍ Functions 3,192◇ Types & classes 18
↓ 8 callersFunctionclear_Correct_dumy
Correct.cpp:11258
↓ 8 callersFunctiondelete_single_edge
Overlaps.cpp:1651
↓ 8 callersFunctiondetermin_hap_alignment_boundary_single_side
Purge_Dups.cpp:1156
↓ 8 callersFunctioned_band_cal_semi_64_w_absent_diag_trace
Levenshtein_distance.h:3778
↓ 8 callersFunctionextract_sub_werr
Correct.cpp:23836
↓ 8 callersFunctionfind_spec_node
Overlaps.cpp:29995
↓ 8 callersFunctiongen_backtrace_adv
Correct.cpp:3760
↓ 8 callersFunctiongetOutputEdges
POA.h:335
↓ 8 callersFunctionget_bub_id
hic.cpp:6924
↓ 8 callersFunctionget_cluster_weight
hic.cpp:10911
↓ 8 callersFunctionget_integer_seq_ovlps
gfa_ut.cpp:9301
↓ 8 callersFunctionget_origin_uid
Overlaps.h:1089
↓ 8 callersFunctionget_osg_arc
horder.cpp:3277
↓ 8 callersFunctionget_pi_ec_chain
anchor.cpp:3582
↓ 8 callersFunctionget_rGraph_edge
hic.cpp:5512
↓ 8 callersFunctionget_related_weight
hic.cpp:10305
↓ 8 callersFunctionget_rid_backward_cigar_err
get error within [qe, ql)
Correct.cpp:24127
↓ 8 callersFunctionget_specfic_edge
gfa_ut.cpp:8047
↓ 8 callersFunctionget_win_se_by_normalize_xs
[w_s, w_e]
Correct.h:1328
↓ 8 callersFunctiongl_chain_gen
inter.cpp:2462
↓ 8 callersFunctionha_ct_shrink
htab.cpp:282
↓ 8 callersFunctionha_encode_base
Process_Read.cpp:1102
↓ 8 callersFunctioniter_flex_asg
gfa_ut.cpp:1837
↓ 8 callersFunctionkr_drand_r
rcut.h:115
↓ 8 callersFunctionkt_pipeline
kthread.cpp:131
↓ 8 callersFunctionmc_set_spin
k is uid
rcut.cpp:1591
↓ 8 callersFunctionmc_solve
rcut.cpp:3710
↓ 8 callersFunctionmg_tbuf_destroy
inter.cpp:179
↓ 8 callersFunctionmg_tbuf_init
inter.cpp:171
↓ 8 callersFunctionpop_pre
inter.cpp:3716
↓ 8 callersFunctionpre_clean
Overlaps.cpp:33007
↓ 8 callersFunctionrd_hm_drop
Overlaps.cpp:25281
↓ 8 callersFunctionremap_gen_arcs
gfa_ut.cpp:11635
↓ 8 callersFunctionreturn_str_seq
Correct.cpp:2345
↓ 8 callersFunctionscan_cigar
Correct.cpp:1626
↓ 8 callersFunctionset_utg_offset
Overlaps.cpp:13001
↓ 8 callersFunctiontrans_path_check
gfa_ut.cpp:1232
↓ 8 callersFunctionupdate_bub_b_s_idx
actually not useful, and may have bug when one bubble at multipe chains
hic.cpp:7663
↓ 8 callersFunctionusg_arc_occ
gfa_ut.cpp:11907
↓ 8 callersFunctionusg_cleanup
gfa_ut.cpp:10663
↓ 8 callersFunctionusg_topocut_aux
gfa_ut.cpp:8784
↓ 7 callersFunctionadd_base_to_correct_read_directly
Correct.cpp:4506
↓ 7 callersFunctionappend_cigar
Correct.cpp:25151
↓ 7 callersFunctionasg_pop_bubble_primary_trio
pop bubbles
Overlaps.cpp:26816
↓ 7 callersFunctionback_status
rcut.cpp:4206
↓ 7 callersFunctionconvert_ul_ov_t
Correct.cpp:19160
↓ 7 callersFunctiondestroy_ec_ovec_buf_t
ecovlp.cpp:179
↓ 7 callersFunctionextend_end_coord
inter.cpp:13793
↓ 7 callersFunctiongen_ul_vec_rid_t
inter.cpp:19557
↓ 7 callersFunctiongetInputEdges
POA.h:268
↓ 7 callersFunctionget_hic_distance
hic.cpp:6711
↓ 7 callersFunctionget_p_nodes
Purge_Dups.cpp:3354
↓ 7 callersFunctionget_ul_arc_supports
gfa_ut.cpp:9577
↓ 7 callersFunctionget_usg_unitig
gfa_ut.cpp:11247
↓ 7 callersFunctionha_pt_get
htab.cpp:518
↓ 7 callersFunctionhc_gdpchain_destroy
inter.cpp:474
↓ 7 callersFunctionkr_splitmix64
rcut.h:107
↓ 7 callersFunctionkrealloc
kalloc.cpp:167
↓ 7 callersFunctionma_2_bub_arc
x_0 and x_1 are the ids of unitigs; x_0_b_id and x_1_b_id are the ids of bubble graph;
hic.cpp:6972
↓ 7 callersFunctionmc_score_all_advance
rcut.cpp:2090
↓ 7 callersFunctionosg_destroy
horder.cpp:2416
↓ 7 callersFunctionoverlap_region_sort_y_id
Hash_Table.cpp:22
↓ 7 callersFunctionpush_sc_pre
inter.cpp:3697
↓ 7 callersFunctiontransfor_coord
inter.cpp:1392
↓ 6 callersFunctionadd_Node_Graph
POA.h:443
↓ 6 callersFunctionasg_bub_pop1_primary_trio_switch_check
pop bubbles from vertex v0; the graph MJUST BE symmetric: if u->v present, v'->u' must be present as well
Overlaps.cpp:24216
↓ 6 callersFunctionbreak_ug_contig
Overlaps.cpp:12521
↓ 6 callersFunctioncal_trans_ov_w
inter.cpp:12562
↓ 6 callersFunctioncalculate_chain_weight
hic.cpp:7849
↓ 6 callersFunctioncheck_file
CommandLines.cpp:428
↓ 6 callersFunctionclean_u_trans_t_idx_adv
Overlaps.cpp:15384
↓ 6 callersFunctionclear_Edge_alloc
POA.cpp:27
↓ 6 callersFunctionclear_count_buf
inter.cpp:10342
↓ 6 callersFunctioncollect_trans_ovlp
tovlp.cpp:759
↓ 6 callersFunctioncomput_sc_ch
Hash_Table.cpp:1490
↓ 6 callersFunctioncut_trio_tip_primary
Overlaps.cpp:18283
↓ 6 callersFunctiondecode_mb_node
rcut.cpp:349
↓ 6 callersFunctiondestory_G_partition
hic.cpp:6290
↓ 6 callersFunctiondestroy_cc_v
ecovlp.cpp:6377
↓ 6 callersFunctiondetect_bubble_end_with_bubbles
Overlaps.cpp:3638
↓ 6 callersFunctiondetect_mul_bubble_end_with_bubbles
Overlaps.cpp:3660
↓ 6 callersFunctiondetect_single_path_with_dels
Overlaps.cpp:5794
↓ 6 callersFunctiondetect_single_path_with_single_bubbles
Overlaps.cpp:3554
↓ 6 callersFunctiondfs_set
tovlp.cpp:782
↓ 6 callersFunctiondrop_semi_circle
Overlaps.cpp:20786
↓ 6 callersFunctioned_band_cal_semi_64_w_absent_diag
Levenshtein_distance.h:3727
↓ 6 callersFunctionff_chain
inter.cpp:4004
↓ 6 callersFunctiongen_aux_ovlp
inter.cpp:7561
↓ 6 callersFunctiongen_bubble_chain
gfa_ut.cpp:3306
↓ 6 callersFunctiongen_ug_opt_t
Overlaps.cpp:39168
↓ 6 callersFunctionget_edge2existing_node_advance
Overlaps.cpp:33318
↓ 6 callersFunctionget_hc_pt1_count
hic.cpp:374
↓ 6 callersFunctionget_mz1
anchor.cpp:3557
↓ 6 callersFunctionget_num_edges2existing_nodes_advance
Overlaps.cpp:33166
↓ 6 callersFunctionget_overlapLen
Overlaps.cpp:9324
↓ 6 callersFunctionget_r_ug_region
inter.cpp:13268
↓ 6 callersFunctionget_specific_edge
Overlaps.cpp:9764
↓ 6 callersFunctionget_ul_o
gfa_ut.cpp:6586
↓ 6 callersFunctionget_xy_pos
Purge_Dups.cpp:641
↓ 6 callersFunctiongl_chain_advance
mode: 0->ug; 1->read
inter.cpp:3723
← previousnext →201–300 of 3,192, ranked by callers