MCPcopy Create free account

hub / github.com/chhylp123/hifiasm / functions

Functions3,192 in github.com/chhylp123/hifiasm

⨍ Functions 3,192◇ Types & classes 18
↓ 15 callersFunctionfind_ul_ov_max
inter.cpp:2490
↓ 15 callersFunctiongen_trace
Levenshtein_distance.h:903
↓ 15 callersFunctionget_bub_pop_max_dist_advance
Overlaps.cpp:26166
↓ 15 callersFunctionget_ecov_contain_adv
mode: 0->ug; 1->read
inter.cpp:7576
↓ 15 callersFunctionget_init_err_thres
Correct.cpp:1042
↓ 15 callersFunctionget_phase_status
hic.cpp:5434
↓ 14 callersFunctionadd_ma_hit_t_alloc
Overlaps.cpp:1064
↓ 14 callersFunctioncal_x_interval
inter.cpp:11202
↓ 14 callersFunctionclear_fake_cigar
Hash_Table.cpp:1290
↓ 14 callersFunctiondestory_bubbles
hic.cpp:2205
↓ 14 callersFunctionget_corresponding_uId
Overlaps.cpp:33860
↓ 14 callersFunctionget_num_wins
[s, e)
Correct.cpp:782
↓ 14 callersFunctionget_u_trans_spec
Overlaps.cpp:17000
↓ 14 callersFunctionget_usg_arc
gfa_ut.cpp:10551
↓ 14 callersFunctionha_pt_destroy
static void worker_pt_sort(void *data, long i, int tid) { ha_pt_t *h = (ha_pt_t*)data; ha_pt1_t *g = &h->h[i]; khint_t k; for (k = 0; k < kh_end(g
htab.cpp:502
↓ 14 callersFunctioninsert_cns_arc
ecovlp.cpp:519
↓ 14 callersFunctioninterpret_pos
hic.cpp:867
↓ 14 callersFunctionretrieve_u_cov
Process_Read.cpp:1778
↓ 14 callersFunctionretrive_bqual
[s, e)
Process_Read.cpp:915
↓ 13 callersFunctionappend_Edge_alloc
POA.cpp:39
↓ 13 callersFunctioncheck_if_diploid
Overlaps.cpp:6108
↓ 13 callersFunctionclear_overlap_region_alloc
Hash_Table.cpp:41
↓ 13 callersFunctiondestory_hap_cov_t
Overlaps.cpp:32165
↓ 13 callersFunctionget_u_offset
inter.cpp:4513
↓ 13 callersFunctionget_win_id_by_e
[w_s, w_e]
Correct.h:1317
↓ 13 callersFunctioninterpr_hit
hic.cpp:15516
↓ 13 callersFunctionkmalloc
kalloc.cpp:127
↓ 13 callersFunctionoutput_trio_unitig_graph
Overlaps.cpp:21159
↓ 13 callersFunctionset_b_utg_weight_flag
hic.cpp:8960
↓ 12 callersFunctionadjust_rev_tse
inter.cpp:13349
↓ 12 callersFunctionfill_subregion_ul
Correct.cpp:279
↓ 12 callersFunctionget_num_trio_flag
Overlaps.cpp:12879
↓ 12 callersFunctionget_phased_block
hic.cpp:6484
↓ 12 callersFunctionget_specific_hap_overlap
Purge_Dups.cpp:3218
↓ 12 callersFunctionha_opt_triobin
CommandLines.h:185
↓ 12 callersFunctionkv_resize
Correct.cpp:23051
↓ 12 callersFunctionma_ug_print
Overlaps.cpp:11002
↓ 12 callersFunctionpush_wcigar
Correct.cpp:4050
↓ 12 callersFunctionset_lchain_dp_op
anchor.cpp:2272
↓ 12 callersFunctionset_ul_ov_t_by_mg_lchain_t
inter.cpp:5568
↓ 11 callersFunctionasg_arc_cut_tips
gfa_ut.cpp:554
↓ 11 callersFunctiondouble_error_threshold
Correct.cpp:917
↓ 11 callersFunctionget_bi_Edge
POA.h:390
↓ 11 callersFunctionget_chainLen
Hash_Table.cpp:779
↓ 11 callersFunctionget_chain_weight_hic
hic.cpp:13350
↓ 11 callersFunctionget_cigar_cell
Correct.h:1291
↓ 11 callersFunctionget_ecov_adv
mode: 0->ug; 1->read
inter.cpp:3405
↓ 11 callersFunctionget_graph_statistic
Overlaps.cpp:18161
↓ 11 callersFunctionha_count
htab.cpp:983
↓ 11 callersFunctioninit_pdq
hic.cpp:3387
↓ 11 callersFunctionmc_score
rcut.cpp:1476
↓ 11 callersFunctionnext_hap_label_id
hic.cpp:11564
↓ 11 callersFunctionpush_scaff_node
gfa_ut.cpp:17234
↓ 11 callersFunctionset_exact_exz
Correct.cpp:16167
↓ 11 callersFunctionug_map_lchain
anchor.cpp:3602
↓ 11 callersFunctionupdate_bubble_graph
hic.cpp:7705
↓ 11 callersFunctionyak_realtime_0
sys.cpp:34
↓ 10 callersFunctionadjust_ext_offset
Correct.cpp:14400
↓ 10 callersFunctionadjust_utg_by_primary
Overlaps.cpp:32425
↓ 10 callersFunctionasg_bub_end_finder_with_del_advance
pop bubbles from vertex v0; the graph MJUST BE symmetric: if u->v present, v'->u' must be present as well note!!!!!!!! here we don't exculde the delet
Overlaps.cpp:3265
↓ 10 callersFunctioncal_exz_infi_adv
Correct.cpp:15617
↓ 10 callersFunctioncheck_different_haps
if ug == NULL, nsg should be equal to read_sg
Overlaps.cpp:430
↓ 10 callersFunctionclassify_hap_overlap
Purge_Dups.cpp:831
↓ 10 callersFunctionclear_Round2_alignment
Correct.cpp:74
↓ 10 callersFunctiongenerate_cigar
Correct.cpp:1857
↓ 10 callersFunctionget_available_cnt
Purge_Dups.cpp:4645
↓ 10 callersFunctionget_iug_u_raw_occ
gfa_ut.cpp:8041
↓ 10 callersFunctionget_total_weight
hic.cpp:11814
↓ 10 callersFunctionha_pt_gen
htab.cpp:380
↓ 10 callersFunctioninit_mg_opt
inter.cpp:481
↓ 10 callersFunctionlable_all_bubbles
Overlaps.cpp:33758
↓ 10 callersFunctionma_ug_print_bed
Overlaps.cpp:11381
↓ 10 callersFunctionnew_node
horder.cpp:166
↓ 10 callersFunctionrefresh_ec_ovec_buf_t0
ecovlp.cpp:216
↓ 10 callersFunctionretrieve_u_cov_region
Process_Read.cpp:1827
↓ 10 callersFunctionset_reverse_hap_overlap
Purge_Dups.cpp:3232
↓ 9 callersFunctionadd_cns_arc
ecovlp.cpp:554
↓ 9 callersFunctioncheck_if_diploid_primary_complex
Overlaps.cpp:6206
↓ 9 callersFunctioncheck_ul_ov_t_consist
inter.cpp:11744
↓ 9 callersFunctiondetect_single_path_with_dels_contigLen
Overlaps.cpp:5934
↓ 9 callersFunctiondouble_ul_error_threshold
Correct.cpp:936
↓ 9 callersFunctiondrop_g_edges_by_utg
hic.cpp:8381
↓ 9 callersFunctiongen_contain_chain
inter.cpp:2723
↓ 9 callersFunctiongen_fake_cigar
Hash_Table.cpp:88
↓ 9 callersFunctiongen_hc_r_alin_re
Correct.cpp:25750
↓ 9 callersFunctiongen_ug_integer_seq_on_fly
gfa_ut.cpp:9203
↓ 9 callersFunctionget_Window
Correct.h:76
↓ 9 callersFunctionget_pair_hap_similarity
Purge_Dups.cpp:986
↓ 9 callersFunctionha_ft_destroy
htab.cpp:1072
↓ 9 callersFunctionhc_glchain_destroy
inter.cpp:467
↓ 9 callersFunctioninit_uldat_t
inter.cpp:21587
↓ 9 callersFunctionmax_ovlp_src
inter.cpp:1505
↓ 9 callersFunctionundel_arcs
gfa_ut.cpp:11235
↓ 8 callersFunctionaddHaplotypeEvdience
Correct.h:1050
↓ 8 callersFunctionappend_cov_line_ug_rid_cov_t
Overlaps.cpp:15836
↓ 8 callersFunctionappend_unmatched_wins
Correct.cpp:1302
↓ 8 callersFunctionasg_arc_del_trans
transitive reduction; see Myers, 2005
Overlaps.cpp:5357
↓ 8 callersFunctionasg_arc_unique_del
horder.cpp:790
↓ 8 callersFunctioncal_exz_global
Correct.cpp:15481
↓ 8 callersFunctioncal_qext_coor
inter.cpp:4779
← previousnext →101–200 of 3,192, ranked by callers