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Types & classes131 in github.com/broadinstitute/gnomad-browser

⨍ Functions 1,294◇ Types & classes 131
↓ 25 callersClassPipeline
data-pipeline/src/data_pipeline/pipeline.py:193
↓ 4 callersClassPipelineConfig
data-pipeline/src/data_pipeline/config.py:28
↓ 2 callersClassGoogleCloudStorageFileSystem
data-pipeline/src/data_pipeline/pipeline.py:20
↓ 2 callersClassLocalFileSystem
data-pipeline/src/data_pipeline/pipeline.py:35
↓ 1 callersClassConfiguration
deploy/deployctl/config.py:11
↓ 1 callersClassReplaceQuoteCharacter
data-pipeline/src/data_pipeline/datasets/gnomad_v2/gnomad_v2_mnvs.py:13
↓ 1 callersClassWritableFile
data-pipeline/tests/pipeline/test_config.py:56
Class
browser/src/PubSub.ts:1
Class
browser/src/ErrorBoundary.tsx:19
Class
browser/src/userPreferences.ts:1
Class
browser/src/CoverageTrack.tsx:113
Class
browser/src/DatasetSelector.tsx:165
Class
browser/src/Query.tsx:50
Class
browser/src/Notifications.tsx:51
Class
browser/src/CopyNumberVariantPage/CNVPopulationsTable.tsx:91
Class
browser/src/StructuralVariantPage/StructuralVariantConsequenceList.tsx:37
Class
browser/src/RegionPage/EditRegion.tsx:46
Class
browser/src/VariantList/VariantTrack.tsx:22
Class
browser/src/MitochondrialVariantPage/MitochondrialVariantHaplogroupFrequenciesTable.tsx:58
Class
browser/src/MitochondrialVariantPage/MitochondrialVariantTranscriptConsequence.tsx:149
Class
browser/src/ReadData/ReadData.tsx:193
Class
browser/src/ReadData/IGVBrowser.tsx:65
Class
browser/src/RegionViewer/ZoomRegionOverview.tsx:14
Class
browser/src/VariantPage/GnomadPopulationsTable.tsx:87
Class
browser/src/VariantPage/PopulationsTable.tsx:109
Class
browser/src/VariantPage/TranscriptConsequenceList.tsx:79
Class
graphql-api/src/errors.ts:1
Class
graphql-api/src/queries/helpers/json-cache.ts:127
Class
reads/src/logging.js:16
Class
reads/src/errors.js:3
ClassAgeDistribution
data-pipeline/src/data_pipeline/datasets/gnomad_v4/types/initial_globals.py:84
ClassAgeDistributions
data-pipeline/src/data_pipeline/datasets/gnomad_v4/types/prepare_variants_step1.py:103
ClassAgeHistograms
data-pipeline/src/data_pipeline/datasets/gnomad_v4/types/initial_variant.py:218
ClassAlleleBalanceQualityMetrics
data-pipeline/src/data_pipeline/datasets/gnomad_v4/types/prepare_variants_step1.py:73
ClassAlleleInfo
data-pipeline/src/data_pipeline/datasets/gnomad_v4/types/initial_variant.py:192
ClassAncestryGroup
data-pipeline/src/data_pipeline/datasets/gnomad_v4/types/prepare_variants_step1.py:13
InterfaceArrayCountPopulation
browser/src/VariantCooccurrencePage/VariantCooccurrencePage.tsx:408
ClassBaseQuery
browser/src/Query.tsx:50
ClassBinDetails
data-pipeline/src/data_pipeline/datasets/gnomad_v4/types/prepare_variants_step1.py:51
ClassCNVPopulationsTable
browser/src/CopyNumberVariantPage/CNVPopulationsTable.tsx:91
ClassCaddPredictor
data-pipeline/src/data_pipeline/datasets/gnomad_v4/types/initial_variant.py:231
ClassColocatedVariants
data-pipeline/src/data_pipeline/datasets/gnomad_v4/types/prepare_variants_step1.py:122
ClassColocatedVariantsExome
data-pipeline/src/data_pipeline/datasets/gnomad_v4/types/prepare_variants_step1.py:109
ClassColocatedVariantsGenome
data-pipeline/src/data_pipeline/datasets/gnomad_v4/types/prepare_variants_step1.py:115
ClassConsequence
data-pipeline/src/data_pipeline/datasets/gnomad_v4/types/initial_variant.py:96
ClassConsequencesInGene
browser/src/VariantPage/TranscriptConsequenceList.tsx:79
InterfaceContext
browser/src/StructuralVariantList/StructuralVariants.tsx:67
InterfaceContext
browser/src/CopyNumberVariantList/CopyNumberVariants.tsx:43
InterfaceCooccurrenceForPopulation
browser/src/VariantCooccurrencePage/VariantCooccurrencePage.tsx:55
ClassCoverage
data-pipeline/src/data_pipeline/datasets/gnomad_v4/types/prepare_variants_step2.py:22
ClassCoverageDetail
data-pipeline/src/data_pipeline/datasets/gnomad_v4/types/prepare_variants_step2.py:7
ClassCoverageTrack
browser/src/CoverageTrack.tsx:113
ClassCutoff
data-pipeline/src/data_pipeline/datasets/gnomad_v4/types/initial_globals.py:29
ClassDataEnvironment
data-pipeline/src/data_pipeline/config.py:5
ClassDomain
data-pipeline/src/data_pipeline/datasets/gnomad_v4/types/initial_variant.py:106
ClassDownloadTask
data-pipeline/src/data_pipeline/pipeline.py:60
ClassDownsampling
data-pipeline/src/data_pipeline/datasets/gnomad_v4/types/initial_globals.py:92
ClassDraggableComponent
browser/src/RegionViewer/ZoomRegionOverview.tsx:14
ClassEditRegionModal
browser/src/RegionPage/EditRegion.tsx:46
ClassErrorBoundary
browser/src/ErrorBoundary.tsx:19
ClassFAF
data-pipeline/src/data_pipeline/datasets/gnomad_v4/types/prepare_variants_step1.py:45
ClassFaf
data-pipeline/src/data_pipeline/datasets/gnomad_v4/types/initial_variant.py:34
ClassFafMax
data-pipeline/src/data_pipeline/datasets/gnomad_v4/types/initial_variant.py:40
ClassFafMaxBySubset
data-pipeline/src/data_pipeline/datasets/gnomad_v4/types/initial_variant.py:49
ClassFeatureMedians
data-pipeline/src/data_pipeline/datasets/gnomad_v4/types/initial_globals.py:16
ClassFilteringModel
data-pipeline/src/data_pipeline/datasets/gnomad_v4/types/initial_globals.py:53
ClassFilteringModelFeature
data-pipeline/src/data_pipeline/datasets/gnomad_v4/types/initial_globals.py:6
ClassFreq
data-pipeline/src/data_pipeline/datasets/gnomad_v4/types/prepare_variants_step1.py:22
ClassFreqBySubsetExome
data-pipeline/src/data_pipeline/datasets/gnomad_v4/types/prepare_variants_step1.py:32
ClassFreqBySubsetGenome
data-pipeline/src/data_pipeline/datasets/gnomad_v4/types/prepare_variants_step1.py:38
ClassFrequency
data-pipeline/src/data_pipeline/datasets/gnomad_v4/types/initial_variant.py:12
InterfaceGenericRegion
browser/src/ConstraintTrack.tsx:66
InterfaceGenericTranscript
browser/src/GenePage/sortedTranscripts.ts:3
ClassGenotypeDepthQualityMetrics
data-pipeline/src/data_pipeline/datasets/gnomad_v4/types/prepare_variants_step1.py:79
ClassGenotypeQualityQualityMetrics
data-pipeline/src/data_pipeline/datasets/gnomad_v4/types/prepare_variants_step1.py:87
ClassGlobals
data-pipeline/src/data_pipeline/datasets/gnomad_v4/types/initial_globals.py:105
ClassGnomad
data-pipeline/src/data_pipeline/datasets/gnomad_v4/types/prepare_variants_step1.py:130
ClassGnomadPopulationsTable
browser/src/VariantPage/GnomadPopulationsTable.tsx:87
ClassGrpmax
data-pipeline/src/data_pipeline/datasets/gnomad_v4/types/initial_variant.py:20
ClassGrpmaxBySubsetGenomes
data-pipeline/src/data_pipeline/datasets/gnomad_v4/types/initial_variant.py:28
ClassHistogram
data-pipeline/src/data_pipeline/datasets/gnomad_v4/types/initial_variant.py:201
ClassHistograms
data-pipeline/src/data_pipeline/datasets/gnomad_v4/types/initial_variant.py:224
ClassHmtVarInfoErrorBoundary
browser/src/MitochondrialVariantPage/MitochondrialVariantTranscriptConsequence.tsx:149
ClassIGVBrowser
* NOTE: This does not update the igv.js browser instance when the config prop changes. * If config may change, add a key to IGVBrowser to create a ne
browser/src/ReadData/IGVBrowser.tsx:65
ClassInSilicoPredictors
data-pipeline/src/data_pipeline/datasets/gnomad_v4/types/initial_variant.py:237
ClassInfo
data-pipeline/src/data_pipeline/datasets/gnomad_v4/types/initial_variant.py:63
ClassInitialVariant
data-pipeline/src/data_pipeline/datasets/gnomad_v4/types/initial_variant.py:248
InterfaceInterval
browser/src/ClinvarVariantsTrack/ClinvarAllVariantsPlot.tsx:80
ClassJsonCache
graphql-api/src/queries/helpers/json-cache.ts:127
ClassLocus
data-pipeline/src/data_pipeline/datasets/gnomad_v4/types/initial_variant.py:6
ClassLogger
reads/src/logging.js:16
ClassMetaFloat
data-pipeline/src/data_pipeline/datasets/gnomad_v4/types/initial_globals.py:47
ClassMetaInt
data-pipeline/src/data_pipeline/datasets/gnomad_v4/types/initial_globals.py:41
ClassMetaString
data-pipeline/src/data_pipeline/datasets/gnomad_v4/types/initial_globals.py:35
InterfaceMetricDistribution
browser/src/VariantPage/VariantSiteQualityMetrics.tsx:65
EnumMetricOptions
browser/src/CoverageTrack.tsx:None
ClassMetricValue
data-pipeline/src/data_pipeline/datasets/gnomad_v4/types/prepare_variants_step1.py:67
ClassMetricsDetail
data-pipeline/src/data_pipeline/datasets/gnomad_v4/types/prepare_variants_step1.py:59
ClassMitochondrialVariantHaplogroupFrequenciesTable
browser/src/MitochondrialVariantPage/MitochondrialVariantHaplogroupFrequenciesTable.tsx:58
InterfaceMtdnaHaplogroupSampleCount
browser/help/faq/mitochondrial-dna/mtdnaHaplogroupPerNuclearAncestryPopulationData.ts:19
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