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README

gnomAD browser

JavaScript tools for exploring genomic data.

To view the gnomAD browser, go to https://gnomad.broadinstitute.org.

License

Licensed under the MIT license. See the LICENSE file.

Citation

For publications on software projects using code from the gnomAD browser, we request citing the following two papers:

For information on citing the gnomAD dataset, see the gnomAD Terms and Data Information.

Development

See CONTRIBUTING.md.

Extension points exported contracts — how you extend this code

GenericRegion (Interface)

(no doc)

browser/src/ConstraintTrack.tsx

MtdnaHaplogroupSampleCount (Interface)

(no doc)

browser/help/faq/mitochondrial-dna/mtdnaHaplogroupPerNuclearAncestryPopulationData.ts

Context (Interface)

(no doc)

browser/src/StructuralVariantList/StructuralVariants.tsx

CooccurrenceForPopulation (Interface)

(no doc)

browser/src/VariantCooccurrencePage/VariantCooccurrencePage.tsx

ArrayCountPopulation (Interface)

(no doc)

browser/src/VariantCooccurrencePage/VariantCooccurrencePage.tsx

ObjectCountPopulation (Interface)

(no doc)

browser/src/VariantCooccurrencePage/VariantCooccurrencePage.tsx

Core symbols most depended-on inside this repo

create

called by 99

data-pipeline/src/data_pipeline/pipeline.py

add_task

called by 89

data-pipeline/src/data_pipeline/pipeline.py

get_task

called by 86

data-pipeline/src/data_pipeline/pipeline.py

referenceGenome

called by 59

dataset-metadata/metadata.ts

labelForDataset

called by 53

dataset-metadata/metadata.ts

get

called by 50

graphql-api/src/queries/helpers/json-cache.ts

getMetadata

called by 48

dataset-metadata/metadata.ts

getCategoryFromConsequence

called by 46

browser/src/vepConsequences.ts

Shape

Function 1,172

Method 122

Class 118

Interface 12

Enum 1

Languages

TypeScript74%

Python26%

Modules by API surface

dataset-metadata/metadata.ts52 symbols

data-pipeline/src/data_pipeline/pipeline.py32 symbols

browser/src/VariantPage/VariantSiteQualityMetrics.tsx25 symbols

data-pipeline/src/data_pipeline/datasets/gnomad_v4/types/initial_variant.py23 symbols

browser/src/VariantList/ExportVariantsButton.tsx23 symbols

data-pipeline/src/data_pipeline/datasets/gnomad_v4/types/prepare_variants_step1.py18 symbols

graphql-api/src/graphql/resolvers/va.ts17 symbols

deploy/deployctl/config.py17 symbols

graphql-api/src/queries/helpers/json-cache.ts16 symbols

data-pipeline/src/data_pipeline/datasets/gnomad_v4/types/initial_globals.py14 symbols

browser/src/VariantCooccurrencePage/VariantCooccurrencePage.tsx14 symbols

graphql-api/src/queries/variant-datasets/gnomad-v4-variant-queries.ts13 symbols

For agents

$ claude mcp add gnomad-browser \
  -- python -m otcore.mcp_server <graph>

⬇ download graph artifact