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Functions1,294 in github.com/broadinstitute/gnomad-browser

↓ 1 callersMethodrenderArea
({ scaleCoverageMetric, scalePosition }: any)
browser/src/CoverageTrack.tsx:159
↓ 1 callersMethodrenderBars
({ isPositionDefined, scaleCoverageMetric, scalePosition, totalBases, width }: any)
browser/src/CoverageTrack.tsx:181
↓ 1 callersFunctionrenderColumnHeader
( key: keyof RowData, sortBy: keyof RowData, setSortBy: (key: keyof RowData) => void, sortAscending: b
browser/src/useTableSort.tsx:13
↓ 1 callersFunctionrenderFilterDescription
(filter: Filter, data: any)
browser/src/QCFilter.tsx:54
↓ 1 callersFunctionrenderGnomadAF
(variant: any)
browser/src/ClinvarVariantsTrack/ClinvarVariantTooltip.tsx:53
↓ 1 callersFunctionrenderInGnomad
(variant: any)
browser/src/ClinvarVariantsTrack/ClinvarVariantTooltip.tsx:36
↓ 1 callersFunctionrenderMetric
(metric: any, datasetId: any)
browser/src/VariantPage/VariantSiteQualityMetrics.tsx:1138
↓ 1 callersFunctionrenderNumberExponential
(number: number | undefined)
browser/src/RegionalMissenseConstraintTrack.tsx:108
↓ 1 callersMethodrenderPlot
({ isPositionDefined, regions, scaleCoverageMetric, scalePosition, width }: any)
browser/src/CoverageTrack.tsx:216
↓ 1 callersMethodrenderPopulationRowHeader
(pop: any)
browser/src/CopyNumberVariantPage/CNVPopulationsTable.tsx:158
↓ 1 callersMethodrenderPopulationRowHeader
(pop: any)
browser/src/VariantPage/PopulationsTable.tsx:174
↓ 1 callersFunctionrenderProbabilityCompoundHeterozygous
(p: any)
browser/src/VariantCooccurrencePage/VariantCooccurrencePage.tsx:83
↓ 1 callersFunctionreorder
(list: any, startIndex: any, endIndex: any)
browser/src/VariantList/VariantTableConfigurationModal.tsx:67
↓ 1 callersFunctionrepunitsWithClassification
( shortTandemRepeat: ShortTandemRepeat, targetClassification: string )
browser/src/ShortTandemRepeatPage/shortTandemRepeatHelpers.ts:55
↓ 1 callersFunctionresolveShortTandemRepeatNumReads
({ dbPath }, { id, filter })
reads/src/resolveShortTandemRepeatReads.js:121
↓ 1 callersFunctionresolveShortTandemRepeatReads
( { dbPath, publicPath }, { id, filter }, { limit = 10, offset = 0 } )
reads/src/resolveShortTandemRepeatReads.js:138
↓ 1 callersFunctionresolveVACohortAlleleFrequency
( focusAllele: Allele, variant_id: string, subset: Subset, frequencyField: 'exome' | 'genome' )
graphql-api/src/graphql/resolvers/va.ts:266
↓ 1 callersFunctionretry_transient_errors
(f: Callable[..., Awaitable[T]], max_attempts: int = 3)
data-pipeline/caids/get_caids.py:90
↓ 1 callersFunctionrollUpVariantCooccurrenceCounts
( unrolledGene: UnrolledVariantCooccurrenceCounts )
browser/src/GenePage/GenePageContainer.tsx:224
↓ 1 callersMethodrun
(self, force_tasks=None)
data-pipeline/src/data_pipeline/pipeline.py:228
↓ 1 callersFunctionscheduleEsStatsPoll
()
graphql-api/src/esPoll.ts:98
↓ 1 callersFunctionschema_writer
(schema_path)
data-pipeline/src/data_pipeline/helpers/write_schemas.py:15
↓ 1 callersFunctionsetCacheExpiration
()
graphql-api/src/cache.ts:22
↓ 1 callersFunctionsetCacheValue
()
graphql-api/src/cache.ts:21
↓ 1 callersFunctionsetSelectedColorBy
(newColorBy: ColorBy | null)
browser/src/ShortTandemRepeatPage/ShortTandemRepeatPage.tsx:226
↓ 1 callersFunctionsetSelectedMetricAndLogButtonClick
(metric: Metric)
browser/src/MitochondrialVariantPage/MitochondrialVariantSiteQualityMetrics.tsx:263
↓ 1 callersFunctionsetSelectedMetricAndLogButtonClick
(metric: string)
browser/src/VariantPage/VariantSiteQualityMetrics.tsx:1011
↓ 1 callersMethodsetSortBy
(sortBy: any)
browser/src/CopyNumberVariantPage/CNVPopulationsTable.tsx:117
↓ 1 callersMethodsetSortBy
(sortBy: any)
browser/src/VariantPage/PopulationsTable.tsx:133
↓ 1 callersFunctionshortVariantDatasetId
(datasetId: DatasetId)
dataset-metadata/metadata.ts:1144
↓ 1 callersFunctionshould_include_line
(line)
data-pipeline/caids/get_caids.py:38
↓ 1 callersMethodshould_run
(self)
data-pipeline/src/data_pipeline/pipeline.py:76
↓ 1 callersMethodshould_run
(self)
data-pipeline/src/data_pipeline/pipeline.py:158
↓ 1 callersFunctionshowAllIndividualsInAgeDistributionByDefault
(datasetId: DatasetId)
dataset-metadata/metadata.ts:1114
↓ 1 callersFunctionsortMitochondrialVariants
(variants: any, { sortKey, sortOrder }: any)
browser/src/MitochondrialVariantList/MitochondrialVariants.tsx:45
↓ 1 callersFunctionsortVariants
(variants: any, { sortKey, sortOrder }: any)
browser/src/StructuralVariantList/StructuralVariants.tsx:61
↓ 1 callersFunctionsortVariants
(variants: any, { sortKey, sortOrder }: any)
browser/src/VariantList/Variants.tsx:40
↓ 1 callersFunctionsortVariants
(variants: any, { sortKey, sortOrder }: any)
browser/src/CopyNumberVariantList/CopyNumberVariants.tsx:37
↓ 1 callersFunctionstartEsStatsPolling
(pollInterval: number)
graphql-api/src/esPoll.ts:96
↓ 1 callersFunctionstructureCounts
(population: ArrayCountPopulation)
browser/src/VariantCooccurrencePage/VariantCooccurrencePage.tsx:418
↓ 1 callersMethodsubscribe
(callback: any)
browser/src/PubSub.ts:4
↓ 1 callersFunctionsubset_filter
(subset)
data-pipeline/src/data_pipeline/datasets/gnomad_v2/gnomad_v2_variants.py:379
↓ 1 callersFunctionsubset_filter
(subset)
data-pipeline/src/data_pipeline/datasets/gnomad_v3/gnomad_v3_variants.py:47
↓ 1 callersFunctionsymbolColor
(clinical_significance: ClinicalSignificance)
browser/src/ClinvarVariantsTrack/ClinvarAllVariantsPlot.tsx:18
↓ 1 callersFunctiontissuePredicate
(tissueFilterText: any)
browser/src/GenePage/TissueExpressionTrack.tsx:300
↓ 1 callersMethodtogglePopulationExpanded
(populationName: string)
browser/src/CopyNumberVariantPage/CNVPopulationsTable.tsx:124
↓ 1 callersMethodtogglePopulationExpanded
(populationName: any)
browser/src/VariantPage/PopulationsTable.tsx:140
↓ 1 callersFunctiontoggleTableMode
( currentTableMode: TableMode, setTableMode: Dispatch<SetStateAction<TableMode>> )
browser/src/GenePage/VariantCooccurrenceCountsTable.tsx:463
↓ 1 callersFunctiontooltipContent
(data: Bin, colorBy: ColorBy | null, key: ColorByValue | '')
browser/src/ShortTandemRepeatPage/ShortTandemRepeatAlleleSizeDistributionPlot.tsx:181
↓ 1 callersFunctiontopologicalSort
(cohortIds: string[])
graphql-api/src/graphql/resolvers/va.ts:351
↓ 1 callersFunctiontopologicalSortLoop
( subcohortMap: Record<string, string[]>, remaining: string[], sorted: string[] )
graphql-api/src/graphql/resolvers/va.ts:332
↓ 1 callersFunctiontranscriptDetails
( geneOrTranscript: Gene | Transcript )
browser/src/ConstraintTable/ConstraintTable.tsx:21
↓ 1 callersFunctiontranscriptsHaveExomeCoverage
(datsetId: DatasetId)
dataset-metadata/metadata.ts:1059
↓ 1 callersFunctionucscUrl
(chrom: any, pos: any, end: any)
browser/src/CopyNumberVariantPage/CNVReferenceList.tsx:7
↓ 1 callersMethodunsubscribe
(callback: any)
browser/src/PubSub.ts:9
↓ 1 callersFunctionupdateProteinMitochondrialGeneConstraint
( previousConstraint: ProteinMitochondrialGeneConstraint, consequence: string, observed: string, expec
graphql-api/src/graphql/resolvers/mitochondrial-constraint.ts:67
↓ 1 callersMethodupdate_text
(self, text: str)
data-pipeline/tests/pipeline/test_config.py:59
↓ 1 callersFunctionuseHeadsObserver
()
browser/src/DataPage/downloadsHooks.ts:5
↓ 1 callersFunctionusesGrch38
(datasetId: DatasetId)
dataset-metadata/metadata.ts:1087
↓ 1 callersFunctionvalidateRegion
(chrom: any, start: any, stop: any)
graphql-api/src/graphql/resolvers/region.ts:17
↓ 1 callersFunctionvariantBinIndex
(variant: any)
browser/src/BinnedVariantsPlot.tsx:55
↓ 1 callersFunctionvariantDistance
({ variant_ids: [variantId1, variantId2] }: CooccurrenceData)
browser/src/VariantCooccurrencePage/VariantCooccurrencePage.tsx:182
↓ 1 callersFunctionvariantFeedbackDescription
(datasetId: DatasetId)
dataset-metadata/metadata.ts:1139
↓ 1 callersFunctionvariantType
(variantId: string)
browser/src/MitochondrialVariantPage/MitochondrialVariantPage.tsx:93
↓ 1 callersFunctionvariant_ids
Return a list of variant ids - one for each alt allele in the variant
data-pipeline/src/data_pipeline/data_types/variant/variant_id.py:27
↓ 1 callersFunctionvariantsInRegion
(datasetId: DatasetId, region: Region)
browser/src/RegionPage/RegionPage.tsx:81
↓ 1 callersFunctionwriteJsonToFile
( obj: any, path: string, useCompression = false )
graphql-api/src/queries/helpers/json-cache.ts:24
↓ 1 callersFunctionwriteJsonToFileGcs
( obj: any, bucket: Bucket, path: string, useCompression = false )
graphql-api/src/queries/helpers/json-cache.ts:69
FunctionAcOfOnePage
()
browser/src/AcOfOnePage.tsx:39
FunctionApp
()
browser/src/App.tsx:84
FunctionAttribute
({ children, name }: AttributeProps)
browser/src/MitochondrialVariantPage/MitochondrialVariantTranscriptConsequence.tsx:28
FunctionAttribute
({ children, name }: AttributeProps)
browser/src/VariantPage/TranscriptConsequence.tsx:34
FunctionAttributeListItem
({ children, label, tooltip }: AttributeListItemProps)
browser/src/AttributeList.tsx:42
FunctionAutosizedRegionViewer
(props: any)
browser/src/RegionViewer/AutosizedRegionViewer.tsx:11
FunctionBinnedVariantsPlot
({ categoryColor, formatTooltip, height, scalePosition, variantCategory, variantCategories, vari
browser/src/BinnedVariantsPlot.tsx:31
FunctionCDSLineSegment
({ x1, x2, y, opacity }: LineSegmentProps)
browser/src/ClinvarVariantsTrack/ClinvarAllVariantsPlot.tsx:156
FunctionCNVReferenceList
({ variant }: CNVReferenceListProps)
browser/src/CopyNumberVariantPage/CNVReferenceList.tsx:22
FunctionCNVUCSCLinks
({ variant }: CNVUCSCLinksProps)
browser/src/CopyNumberVariantPage/CNVReferenceList.tsx:14
FunctionCategoryFilterControl
({ breakpoint = 1200, categories, categorySelections, className, id, onChange, style, }: Categor
browser/src/CategoryFilterControl.tsx:150
FunctionClinvarAllVariantsPlot
({ scalePosition, transcripts, variants, width, onClickVariant, }: ClinvarAllVariantsPlotProps)
browser/src/ClinvarVariantsTrack/ClinvarAllVariantsPlot.tsx:338
FunctionClinvarBinnedVariantsPlot
({ includedCategories, ...props }: Props)
browser/src/ClinvarVariantsTrack/ClinvarBinnedVariantsPlot.tsx:64
FunctionClinvarVariantDetails
({ clinvarVariant, clinvarReleaseDate, }: ClinvarVariantDetailsProps)
browser/src/ClinvarVariantsTrack/ClinvarVariantDetails.tsx:89
FunctionClinvarVariantDetailsContainer
({ referenceGenome, variantId, }: ClinvarVariantDetailsContainerProps)
browser/src/ClinvarVariantsTrack/ClinvarVariantDetails.tsx:220
FunctionClinvarVariantDetailsGnomadData
({ clinvarVariant, }: ClinvarVariantDetailsGnomadDataProps)
browser/src/ClinvarVariantsTrack/ClinvarVariantDetails.tsx:29
FunctionClinvarVariantTooltip
({ variant }: ClinvarVariantTooltipProps)
browser/src/ClinvarVariantsTrack/ClinvarVariantTooltip.tsx:70
FunctionClinvarVariantTrack
({ referenceGenome, transcripts, variants }: Props)
browser/src/ClinvarVariantsTrack/ClinvarVariantTrack.tsx:101
FunctionComplexTypeHelpButton
({ complexType }: ComplexTypeHelpButtonProps)
browser/src/StructuralVariantPage/StructuralVariantAttributeList.tsx:120
FunctionComposedComponent
({ children, id, ...props }: any)
browser/src/AnchorLink.tsx:29
FunctionConnectedCopyNumberVariantPage
({ datasetId, variantId, }: ConnectedCopyNumberVariantPageProps)
browser/src/CopyNumberVariantPage/CopyNumberVariantPage.tsx:111
FunctionConnectedMitochondrialVariantPage
({ datasetId, variantId, }: ConnectedMitochondrialVariantPageProps)
browser/src/MitochondrialVariantPage/MitochondrialVariantPage.tsx:410
FunctionConnectedStructuralVariantPage
({ datasetId, variantId, }: ConnectedStructuralVariantPageProps)
browser/src/StructuralVariantPage/StructuralVariantPage.tsx:186
FunctionConnectedVariantsInGene
({ datasetId, gene, ...otherProps }: ConnectedVariantsInGeneProps)
browser/src/GenePage/VariantsInGene.tsx:334
FunctionConnectedVariantsInRegion
({ datasetId, region }: ConnectedVariantsInRegionProps)
browser/src/RegionPage/VariantsInRegion.tsx:222
FunctionConnectedVariantsInTranscript
({ datasetId, transcript, ...otherProps }: ConnectedVariantsInTranscriptProps)
browser/src/TranscriptPage/VariantsInTranscript.tsx:250
FunctionConsequencesInGene
({ transcriptConsequences, variant }: ConsequencesInGeneProps)
browser/src/MitochondrialVariantPage/MitochondrialVariantTranscriptConsequenceList.tsx:45
FunctionConstraintRow
({ category, expected, observed, oe, oeLower, oeUpper, highlight, }: ConstraintRowProps)
browser/src/ConstraintTable/MitochondrialConstraintTable.tsx:42
FunctionConstraintTable
({ datasetId, geneOrTranscript }: Props)
browser/src/ConstraintTable/ConstraintTable.tsx:77
FunctionConstraintTrack
({ trackTitle, allRegions, constrainedRegions, infobuttonTopic, legend, tooltipComponent, colorF
browser/src/ConstraintTrack.tsx:128
FunctionControlSection
({ children, ...otherProps }: Props)
browser/src/VariantPage/ControlSection.tsx:31
FunctionCopyNumberVariantAttributeList
({ variant }: CopyNumberVariantAttributeListProps)
browser/src/CopyNumberVariantPage/CopyNumberVariantAttributeList.tsx:29
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